Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47000 * 2 1 4 4 C 1.52996 * 109.47706 * 239.99438 * 2 1 3 5 5 C 1.50707 * 109.47181 * 64.99788 * 4 2 1 6 6 H 1.08002 * 119.99452 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00290 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00125 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00237 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46876 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47370 * 119.99885 * 9 7 5 12 12 H 1.48503 * 109.46644 * 239.99895 * 9 7 5 13 13 C 1.53003 * 109.47177 * 119.99243 * 2 1 3 14 14 N 1.46899 * 109.47009 * 295.00592 * 13 2 1 15 15 C 1.46898 * 110.99823 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47294 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.47046 * 304.99875 * 16 15 14 18 18 C 1.52993 * 109.47460 * 185.00006 * 16 15 14 19 19 O 1.42897 * 109.47378 * 64.99251 * 16 15 14 20 20 C 1.35902 * 117.00395 * 204.87350 * 19 16 15 21 21 C 1.38728 * 120.05784 * 174.34824 * 20 19 16 22 22 C 1.38145 * 119.94584 * 180.30184 * 21 20 19 23 23 C 1.38262 * 120.05621 * 359.95665 * 22 21 20 24 24 C 1.38270 * 120.11111 * 0.03957 * 23 22 21 25 25 C 1.38145 * 120.05425 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.46689 * 60.00832 * 1 2 3 27 27 H 1.08995 * 109.46621 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47255 * 300.00643 * 1 2 3 29 29 H 1.08998 * 109.47440 * 184.99622 * 4 2 1 30 30 H 1.09003 * 109.47170 * 305.00562 * 4 2 1 31 31 H 0.96999 * 120.00529 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47477 * 175.00172 * 13 2 1 33 33 H 1.08999 * 109.46819 * 55.00430 * 13 2 1 34 34 H 1.00896 * 111.00499 * 56.04432 * 14 13 2 35 35 H 1.08994 * 109.47328 * 59.99852 * 15 14 13 36 36 H 1.08997 * 109.47168 * 299.99516 * 15 14 13 37 37 H 1.09005 * 109.47533 * 59.99406 * 18 16 15 38 38 H 1.08999 * 109.47567 * 179.97438 * 18 16 15 39 39 H 1.09004 * 109.46884 * 299.99968 * 18 16 15 40 40 H 1.08009 * 120.02570 * 0.25345 * 21 20 19 41 41 H 1.07996 * 119.97308 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.94840 * 180.02562 * 23 22 21 43 43 H 1.07994 * 119.97568 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02855 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0568 -2.4766 6 1 1.0807 0.9743 -2.3757 7 6 1.9926 -0.4025 -3.7282 8 7 2.6750 -1.5200 -3.8510 9 14 1.4990 0.5624 -5.2497 10 1 0.7424 1.7740 -4.8436 11 1 2.7173 0.9663 -5.9966 12 1 0.6444 -0.2863 -6.1184 13 6 2.0400 -0.7211 1.2494 14 7 1.6513 0.0377 2.4456 15 6 2.1257 -0.6261 3.6672 16 6 1.7022 0.1914 4.8892 17 1 2.0610 1.2152 4.7836 18 6 2.3012 -0.4312 6.1519 19 8 0.2767 0.1943 4.9897 20 6 -0.2933 1.2372 5.6488 21 6 -1.6741 1.3662 5.6833 22 6 -2.2509 2.4306 6.3486 23 6 -1.4532 3.3665 6.9807 24 6 -0.0767 3.2402 6.9479 25 6 0.5050 2.1777 6.2836 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8898 29 1 3.1265 -0.7995 -1.2054 30 1 1.6055 -1.7199 -1.2950 31 1 2.9223 -1.8431 -4.7316 32 1 3.1263 -0.7993 1.2058 33 1 1.6055 -1.7196 1.2953 34 1 0.6528 0.1795 2.4753 35 1 3.2126 -0.7032 3.6402 36 1 1.6921 -1.6241 3.7302 37 1 3.3886 -0.4334 6.0753 38 1 1.9998 0.1515 7.0224 39 1 1.9424 -1.4550 6.2575 40 1 -2.2977 0.6354 5.1896 41 1 -3.3258 2.5317 6.3754 42 1 -1.9059 4.1977 7.5007 43 1 0.5443 3.9727 7.4419 44 1 1.5802 2.0797 6.2579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = -35.401900 kcal Electronic energy + Delta-G solvation = -21007.981289 eV Core-core repulsion = 17924.660900 eV Total energy + Delta-G solvation = -3083.320389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42183 -38.00508 -36.70678 -34.25808 -32.52180 -31.42970 -30.81071 -29.78272 -27.08063 -26.27755 -24.34929 -23.40511 -22.57351 -22.03113 -20.83321 -18.91458 -18.53838 -16.48626 -16.35156 -15.95992 -15.71355 -15.35876 -14.64182 -14.62823 -14.22106 -13.93463 -13.65242 -13.54725 -13.06875 -12.94648 -12.60517 -12.38421 -12.16991 -11.98951 -11.83859 -11.69278 -11.41496 -11.21835 -11.03637 -10.86160 -10.79126 -10.67928 -10.29912 -10.15056 -9.69454 -9.17605 -9.12797 -8.92917 -8.33817 -8.31278 -8.15071 -5.95806 -3.96737 1.16222 1.29231 3.05554 3.33602 3.41104 3.45534 3.63218 4.24767 4.50478 4.60000 4.70046 4.75465 4.90319 4.96675 5.03898 5.19657 5.22298 5.36718 5.40122 5.42139 5.45587 5.66333 5.70168 5.80430 5.82612 5.86173 5.89174 6.09672 6.17095 6.23668 6.29099 6.35221 6.50150 6.59365 6.62025 6.96065 7.14027 7.19859 7.32163 7.36236 7.66771 7.72423 7.88480 8.04757 8.48842 9.09893 9.66685 11.15819 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.003011 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.968321 B = 9297.701223 C =10046.416335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.063 3.937 16 C 0.082 3.918 17 H 0.084 0.916 18 C -0.179 4.179 19 O -0.310 6.310 20 C 0.140 3.860 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.210 4.210 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.345 0.655 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 5.440 23.944 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.324 5.324 15 C -0.067 4.067 16 C 0.026 3.974 17 H 0.101 0.899 18 C -0.237 4.237 19 O -0.223 6.223 20 C 0.094 3.906 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.228 4.228 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.312 5.570 23.678 24.703 hybrid contribution -0.594 -0.234 -0.806 1.028 sum -4.906 5.337 22.872 23.993 Atomic orbital electron populations 1.21737 0.96649 1.00456 1.00292 1.21220 0.94926 1.00048 0.94096 0.91680 1.19117 0.96107 0.95389 0.90379 1.21284 1.34471 1.08228 0.90975 0.92500 1.25022 0.95367 0.95101 0.99110 1.69977 1.39259 1.21260 1.23248 0.86574 0.78249 0.80141 0.83283 1.19730 1.21091 1.21132 1.22146 1.00270 0.94531 0.89495 1.60603 1.20447 1.50128 1.01196 1.22037 1.00732 0.95374 0.88522 1.22601 0.78085 1.01277 0.95426 0.89853 1.22348 1.01691 1.02287 0.97338 1.86107 1.22739 1.42415 1.71074 1.19028 0.92573 0.87195 0.91814 1.20492 0.91953 1.00735 1.04249 1.20959 0.99846 0.93370 0.95803 1.21037 0.93788 1.00469 1.02995 1.20947 0.94988 0.96689 0.97351 1.21335 1.00196 0.97476 1.03821 0.91868 0.94023 0.94936 0.96667 0.96733 0.93175 0.91462 0.95728 0.83601 0.89249 0.94434 0.90714 0.91796 0.91427 0.85283 0.85549 0.86144 0.86002 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.78 37.16 0.33 -2.27 16 2 C -0.08 -1.76 2.54 -90.62 -0.23 -1.99 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.58 6.50 -113.78 -0.74 -11.32 16 15 C 0.06 0.78 5.39 -3.82 -0.02 0.76 16 16 C 0.08 0.90 2.46 -26.73 -0.07 0.83 16 17 H 0.08 0.92 6.32 -51.93 -0.33 0.59 16 18 C -0.18 -1.52 9.17 37.15 0.34 -1.18 16 19 O -0.31 -3.87 9.32 -19.43 -0.18 -4.05 16 20 C 0.14 1.65 6.60 -39.22 -0.26 1.39 16 21 C -0.16 -1.70 9.99 -39.43 -0.39 -2.09 16 22 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 23 C -0.16 -1.46 10.04 -39.56 -0.40 -1.86 16 24 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 25 C -0.21 -2.18 8.24 -39.43 -0.33 -2.51 16 26 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.34 5.37 6.54 -39.29 -0.26 5.11 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.13 1.18 5.42 -52.49 -0.28 0.90 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -30.80 354.54 -9.57 -40.37 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.36 Total: 2.08 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.35 Total: -22.82 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.00 Total: -37.80 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.18 Total: -4.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.80 -9.57 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.969 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds