Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47146 * 2 1 4 4 C 1.52993 * 109.47358 * 239.99555 * 2 1 3 5 5 N 1.46896 * 109.47633 * 180.02562 * 4 2 1 6 6 C 1.46897 * 111.00366 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47090 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47423 * 305.00302 * 7 6 5 9 9 C 1.53002 * 109.47216 * 65.00025 * 7 6 5 10 10 C 1.53000 * 109.47354 * 185.00109 * 7 6 5 11 11 C 1.50696 * 109.47388 * 175.00280 * 10 7 6 12 12 H 1.08006 * 120.00198 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99877 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00051 * 0.27397 * 13 11 10 15 15 Si 1.86805 * 119.99591 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47106 * 60.00501 * 15 13 11 17 17 H 1.48499 * 109.46797 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47195 * 299.99898 * 15 13 11 19 19 O 1.42908 * 109.47074 * 119.99469 * 2 1 3 20 20 C 1.35899 * 117.00021 * 275.34119 * 19 2 1 21 21 C 1.38727 * 120.05560 * 5.08021 * 20 19 2 22 22 C 1.38148 * 119.94189 * 179.74726 * 21 20 19 23 23 C 1.38260 * 120.05683 * 0.50673 * 22 21 20 24 24 C 1.38273 * 120.10972 * 359.76720 * 23 22 21 25 25 C 1.38142 * 120.05528 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46943 * 300.00445 * 1 2 3 28 28 H 1.08999 * 109.46800 * 60.00330 * 1 2 3 29 29 H 1.09002 * 109.46929 * 59.99767 * 4 2 1 30 30 H 1.09004 * 109.47299 * 299.99979 * 4 2 1 31 31 H 1.00895 * 110.99928 * 56.04034 * 5 4 2 32 32 H 1.09002 * 109.47129 * 59.99936 * 6 5 4 33 33 H 1.08992 * 109.46931 * 300.00018 * 6 5 4 34 34 H 1.09002 * 109.46699 * 59.99834 * 9 7 6 35 35 H 1.09001 * 109.47461 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47289 * 300.00512 * 9 7 6 37 37 H 1.08995 * 109.47092 * 54.99580 * 10 7 6 38 38 H 1.09007 * 109.47032 * 294.99969 * 10 7 6 39 39 H 0.96995 * 120.00078 * 359.72596 * 14 13 11 40 40 H 1.07999 * 120.03271 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.97078 * 180.23198 * 22 21 20 42 42 H 1.07999 * 119.94536 * 179.74965 * 23 22 21 43 43 H 1.08003 * 119.96750 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02882 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5090 -0.7219 -1.2489 6 6 4.0355 -1.4071 -2.4368 7 6 5.5649 -1.3867 -2.4014 8 1 5.9125 -0.3583 -2.3032 9 6 6.0585 -2.2079 -1.2084 10 6 6.1132 -1.9888 -3.6967 11 6 7.6143 -1.8574 -3.7159 12 1 8.1261 -1.3906 -2.8872 13 6 8.3343 -2.3329 -4.7913 14 7 7.7106 -2.8964 -5.8028 15 14 10.1950 -2.1693 -4.8153 16 1 10.7703 -2.8901 -3.6515 17 1 10.7271 -2.7549 -6.0719 18 1 10.5666 -0.7335 -4.7415 19 8 2.0064 -0.6736 1.1669 20 6 2.1058 0.0610 2.3059 21 6 1.6539 1.3724 2.3286 22 6 1.7513 2.1153 3.4892 23 6 2.3081 1.5563 4.6246 24 6 2.7644 0.2512 4.6029 25 6 2.6644 -0.4976 3.4463 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1391 30 1 1.6768 -1.7490 -1.2491 31 1 3.8703 -1.1356 -0.4025 32 1 3.6864 -0.8975 -3.3348 33 1 3.6856 -2.4394 -2.4456 34 1 5.7110 -3.2363 -1.3066 35 1 7.1481 -2.1937 -1.1834 36 1 5.6679 -1.7790 -0.2856 37 1 5.6911 -1.4591 -4.5507 38 1 5.8400 -3.0427 -3.7516 39 1 6.7444 -2.9810 -5.7904 40 1 1.2230 1.8111 1.4407 41 1 1.3962 3.1351 3.5085 42 1 2.3871 2.1400 5.5298 43 1 3.1993 -0.1831 5.4910 44 1 3.0213 -1.5167 3.4298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = -39.020854 kcal Electronic energy + Delta-G solvation = -21059.006244 eV Core-core repulsion = 17975.528925 eV Total energy + Delta-G solvation = -3083.477318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45248 -38.04554 -36.80233 -34.42061 -32.67171 -31.43630 -30.81604 -29.80785 -26.76076 -26.31737 -24.24924 -23.41724 -22.59608 -22.14615 -20.86123 -19.16695 -18.57047 -16.73176 -16.40211 -16.13464 -15.78538 -15.40990 -14.67700 -14.47218 -13.99824 -13.75709 -13.66749 -13.65413 -13.37814 -13.10388 -12.62629 -12.40866 -12.33361 -12.07674 -11.76988 -11.62764 -11.52571 -11.22287 -11.07031 -11.00036 -10.79732 -10.65840 -10.17664 -10.04855 -9.82113 -9.41844 -9.19607 -8.45662 -8.35801 -8.27383 -8.21064 -6.29969 -3.97781 1.14173 1.27207 3.02205 3.47218 3.49326 3.61079 3.67743 4.18942 4.56365 4.59833 4.67474 4.72168 4.86042 4.93679 4.99315 5.17567 5.19857 5.31287 5.39067 5.41704 5.46472 5.61240 5.63987 5.71073 5.76981 5.81523 5.84370 5.99575 6.14649 6.18807 6.21529 6.33273 6.40256 6.49608 6.59646 6.83567 7.04645 7.06543 7.25067 7.30323 7.45181 7.57853 7.66320 8.29860 8.53186 8.95340 9.73575 11.10537 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.003043 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.454002 B = 9199.966877 C = 9974.138438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.083 0.917 4 C 0.063 3.937 5 N -0.690 5.690 6 C 0.063 3.937 7 C -0.077 4.077 8 H 0.066 0.934 9 C -0.133 4.133 10 C 0.015 3.985 11 C -0.594 4.594 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.916 5.916 15 Si 1.067 2.933 16 H -0.289 1.289 17 H -0.283 1.283 18 H -0.288 1.288 19 O -0.309 6.309 20 C 0.140 3.860 21 C -0.210 4.210 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.155 4.155 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.346 0.654 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 7.733 18.347 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.027 3.973 3 H 0.101 0.899 4 C -0.066 4.066 5 N -0.323 5.323 6 C -0.065 4.065 7 C -0.096 4.096 8 H 0.085 0.915 9 C -0.191 4.191 10 C -0.022 4.022 11 C -0.632 4.632 12 H 0.068 0.932 13 C -0.191 4.191 14 N -0.553 5.553 15 Si 0.896 3.104 16 H -0.215 1.215 17 H -0.209 1.209 18 H -0.215 1.215 19 O -0.223 6.223 20 C 0.094 3.906 21 C -0.229 4.229 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.166 0.834 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.424 7.820 17.110 23.706 hybrid contribution -1.708 -0.378 1.052 2.041 sum -16.131 7.442 18.163 25.406 Atomic orbital electron populations 1.22354 0.94935 1.03436 1.02968 1.22586 0.93659 0.97622 0.83435 0.89930 1.22044 0.90023 0.99144 0.95435 1.60558 1.05317 1.59918 1.06490 1.22150 0.97035 0.95291 0.92036 1.21080 0.91014 1.00067 0.97443 0.91534 1.21727 1.02271 0.98707 0.96357 1.19235 0.96682 0.94903 0.91417 1.22041 0.91830 1.42408 1.06914 0.93202 1.25828 1.06772 0.93852 0.92641 1.70778 1.11293 1.41604 1.31628 0.83567 0.74594 0.76295 0.75960 1.21513 1.20870 1.21474 1.86097 1.80894 1.38659 1.16640 1.19022 0.94553 0.90276 0.86751 1.21327 1.07092 0.94450 0.99987 1.20946 0.97352 0.99311 0.92372 1.21040 1.02550 0.95942 0.98727 1.20966 0.97792 0.94044 0.97155 1.20491 1.03999 1.01446 0.91460 0.91419 0.91735 0.90723 0.89310 0.94494 0.83420 0.91565 0.95797 0.94118 0.91736 0.94745 0.97624 0.97686 0.92205 0.85311 0.85994 0.86118 0.85519 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.17 37.16 0.34 -1.17 16 2 C 0.08 0.90 2.50 -26.73 -0.07 0.84 16 3 H 0.08 0.90 6.31 -51.93 -0.33 0.57 16 4 C 0.06 0.78 5.42 -3.83 -0.02 0.76 16 5 N -0.69 -10.62 6.50 -113.79 -0.74 -11.36 16 6 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 7 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 8 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 9 C -0.13 -2.62 8.78 37.16 0.33 -2.30 16 10 C 0.02 0.39 3.76 -27.89 -0.10 0.29 16 11 C -0.59 -17.08 8.41 -34.44 -0.29 -17.37 16 12 H 0.05 1.41 7.06 -52.48 -0.37 1.04 16 13 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 14 N -0.92 -28.56 13.65 55.43 0.76 -27.81 16 15 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 O -0.31 -3.87 9.14 -19.42 -0.18 -4.05 16 20 C 0.14 1.65 6.60 -39.22 -0.26 1.39 16 21 C -0.21 -2.18 8.23 -39.43 -0.32 -2.50 16 22 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 23 C -0.16 -1.45 10.04 -39.56 -0.40 -1.85 16 24 C -0.08 -0.76 10.04 -39.60 -0.40 -1.15 16 25 C -0.16 -1.70 9.99 -39.43 -0.39 -2.10 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.35 5.43 6.37 -39.29 -0.25 5.18 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.37 6.95 -51.93 -0.36 1.01 16 36 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 37 H 0.01 0.15 8.00 -51.93 -0.42 -0.27 16 38 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 39 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 40 H 0.13 1.17 5.43 -52.49 -0.29 0.89 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -31.63 352.94 -9.55 -41.19 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.30 Total: 2.83 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.33 Total: -26.81 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.02 Total: -39.17 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.18 Total: -4.05 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.63 -9.55 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.165 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds