Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47146 * 2 1 4 4 C 1.52993 * 109.47358 * 239.99555 * 2 1 3 5 5 N 1.46896 * 109.47633 * 180.02562 * 4 2 1 6 6 C 1.46897 * 111.00366 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47090 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47423 * 305.00302 * 7 6 5 9 9 C 1.53002 * 109.47216 * 65.00025 * 7 6 5 10 10 C 1.53000 * 109.47354 * 185.00109 * 7 6 5 11 11 C 1.50696 * 109.47388 * 175.00280 * 10 7 6 12 12 H 1.08006 * 120.00198 * 359.97438 * 11 10 7 13 13 C 1.37884 * 119.99877 * 179.97438 * 11 10 7 14 14 N 1.31513 * 120.00051 * 0.27397 * 13 11 10 15 15 Si 1.86805 * 119.99591 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47106 * 60.00501 * 15 13 11 17 17 H 1.48499 * 109.46797 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47195 * 299.99898 * 15 13 11 19 19 O 1.42908 * 109.47074 * 119.99469 * 2 1 3 20 20 C 1.35899 * 117.00021 * 275.34119 * 19 2 1 21 21 C 1.38727 * 120.05560 * 5.08021 * 20 19 2 22 22 C 1.38148 * 119.94189 * 179.74726 * 21 20 19 23 23 C 1.38260 * 120.05683 * 0.50673 * 22 21 20 24 24 C 1.38273 * 120.10972 * 359.76720 * 23 22 21 25 25 C 1.38142 * 120.05528 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46943 * 300.00445 * 1 2 3 28 28 H 1.08999 * 109.46800 * 60.00330 * 1 2 3 29 29 H 1.09002 * 109.46929 * 59.99767 * 4 2 1 30 30 H 1.09004 * 109.47299 * 299.99979 * 4 2 1 31 31 H 1.00895 * 110.99928 * 56.04034 * 5 4 2 32 32 H 1.09002 * 109.47129 * 59.99936 * 6 5 4 33 33 H 1.08992 * 109.46931 * 300.00018 * 6 5 4 34 34 H 1.09002 * 109.46699 * 59.99834 * 9 7 6 35 35 H 1.09001 * 109.47461 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47289 * 300.00512 * 9 7 6 37 37 H 1.08995 * 109.47092 * 54.99580 * 10 7 6 38 38 H 1.09007 * 109.47032 * 294.99969 * 10 7 6 39 39 H 0.96995 * 120.00078 * 359.72596 * 14 13 11 40 40 H 1.07999 * 120.03271 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.97078 * 180.23198 * 22 21 20 42 42 H 1.07999 * 119.94536 * 179.74965 * 23 22 21 43 43 H 1.08003 * 119.96750 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02882 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5090 -0.7219 -1.2489 6 6 4.0355 -1.4071 -2.4368 7 6 5.5649 -1.3867 -2.4014 8 1 5.9125 -0.3583 -2.3032 9 6 6.0585 -2.2079 -1.2084 10 6 6.1132 -1.9888 -3.6967 11 6 7.6143 -1.8574 -3.7159 12 1 8.1261 -1.3906 -2.8872 13 6 8.3343 -2.3329 -4.7913 14 7 7.7106 -2.8964 -5.8028 15 14 10.1950 -2.1693 -4.8153 16 1 10.7703 -2.8901 -3.6515 17 1 10.7271 -2.7549 -6.0719 18 1 10.5666 -0.7335 -4.7415 19 8 2.0064 -0.6736 1.1669 20 6 2.1058 0.0610 2.3059 21 6 1.6539 1.3724 2.3286 22 6 1.7513 2.1153 3.4892 23 6 2.3081 1.5563 4.6246 24 6 2.7644 0.2512 4.6029 25 6 2.6644 -0.4976 3.4463 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1391 30 1 1.6768 -1.7490 -1.2491 31 1 3.8703 -1.1356 -0.4025 32 1 3.6864 -0.8975 -3.3348 33 1 3.6856 -2.4394 -2.4456 34 1 5.7110 -3.2363 -1.3066 35 1 7.1481 -2.1937 -1.1834 36 1 5.6679 -1.7790 -0.2856 37 1 5.6911 -1.4591 -4.5507 38 1 5.8400 -3.0427 -3.7516 39 1 6.7444 -2.9810 -5.7904 40 1 1.2230 1.8111 1.4407 41 1 1.3962 3.1351 3.5085 42 1 2.3871 2.1400 5.5298 43 1 3.1993 -0.1831 5.4910 44 1 3.0213 -1.5167 3.4298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -57.304292 kcal Electronic energy + Delta-G solvation = -21059.799073 eV Core-core repulsion = 17975.528925 eV Total energy + Delta-G solvation = -3084.270148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24967 -38.99022 -38.16504 -35.98457 -34.31954 -32.62887 -31.66412 -30.54424 -28.61082 -27.71352 -25.79701 -24.31151 -23.90361 -23.31449 -21.73299 -20.85430 -19.35795 -18.89202 -17.34107 -17.10493 -16.63617 -16.42120 -15.85716 -15.62747 -15.50089 -15.29894 -15.05694 -14.83143 -14.39062 -14.03519 -13.74645 -13.69506 -13.42643 -13.28251 -13.16215 -13.01435 -12.84442 -12.52884 -12.42635 -12.20087 -11.98187 -11.94194 -11.72848 -11.65491 -11.52145 -11.30849 -10.57853 -10.52424 -9.91990 -9.47930 -9.12087 -8.66109 -6.35023 0.41925 0.52869 1.52290 1.60972 1.79987 2.22137 2.57570 2.87979 3.06669 3.18103 3.74246 3.93320 3.97908 4.03888 4.05330 4.11953 4.17066 4.29625 4.30778 4.43976 4.52543 4.54762 4.58957 4.65751 4.69788 4.72814 4.83157 4.87797 4.92071 4.99571 5.10988 5.15894 5.21576 5.27743 5.41256 5.44607 5.51220 5.60124 5.62808 5.90024 5.93999 6.07974 6.21513 6.34801 6.50289 6.61685 7.45748 8.74741 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.003043 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.454002 B = 9199.966877 C = 9974.138438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.082 0.918 4 C 0.062 3.938 5 N -0.691 5.691 6 C 0.076 3.924 7 C -0.070 4.070 8 H 0.055 0.945 9 C -0.125 4.125 10 C 0.018 3.982 11 C -0.607 4.607 12 H 0.051 0.949 13 C -0.042 4.042 14 N -0.941 5.941 15 Si 1.116 2.884 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.269 1.269 19 O -0.327 6.327 20 C 0.116 3.884 21 C -0.219 4.219 22 C -0.087 4.087 23 C -0.167 4.167 24 C -0.085 4.085 25 C -0.176 4.176 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.345 0.655 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.062 0.938 37 H -0.015 1.015 38 H -0.014 1.014 39 H 0.254 0.746 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.115 9.024 20.139 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.030 3.970 3 H 0.100 0.900 4 C -0.067 4.067 5 N -0.324 5.324 6 C -0.053 4.053 7 C -0.089 4.089 8 H 0.074 0.926 9 C -0.182 4.182 10 C -0.020 4.020 11 C -0.644 4.644 12 H 0.070 0.930 13 C -0.239 4.239 14 N -0.579 5.579 15 Si 0.937 3.063 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.195 1.195 19 O -0.242 6.242 20 C 0.071 3.929 21 C -0.238 4.238 22 C -0.105 4.105 23 C -0.185 4.185 24 C -0.103 4.103 25 C -0.195 4.195 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.164 0.836 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.004 0.996 38 H 0.005 0.995 39 H 0.063 0.937 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.704 9.123 18.928 25.645 hybrid contribution -1.685 -0.750 0.554 1.925 sum -16.389 8.372 19.481 26.799 Atomic orbital electron populations 1.22303 0.93016 1.03586 1.04056 1.22581 0.95036 0.97015 0.82381 0.90003 1.22164 0.87879 0.99654 0.97025 1.60505 1.07399 1.59189 1.05263 1.21860 0.94548 0.95606 0.93251 1.20909 0.93447 0.99038 0.95503 0.92640 1.21627 1.01019 0.98661 0.96933 1.19164 0.95719 0.93777 0.93304 1.22443 0.93356 1.41800 1.06844 0.93027 1.27413 1.11348 0.92953 0.92188 1.70915 1.10590 1.43577 1.32863 0.82953 0.69241 0.77539 0.76556 1.19414 1.20969 1.19463 1.86054 1.81478 1.39454 1.17211 1.19269 0.95828 0.91081 0.86756 1.21513 1.07199 0.94098 1.00943 1.21307 0.96857 1.00335 0.92004 1.21415 1.01532 0.95924 0.99599 1.21286 0.97407 0.94322 0.97311 1.20705 1.04760 1.01855 0.92140 0.91728 0.91262 0.88979 0.88073 0.94514 0.83587 0.91752 0.95863 0.94139 0.93575 0.91900 0.99639 0.99536 0.93657 0.84471 0.83677 0.83654 0.83374 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.17 71.98 0.66 -1.96 16 2 C 0.09 1.76 2.50 30.59 0.08 1.84 16 3 H 0.08 1.67 6.31 -2.39 -0.02 1.66 16 4 C 0.06 1.45 5.42 86.30 0.47 1.92 16 5 N -0.69 -20.64 6.50 -513.92 -3.34 -23.98 16 6 C 0.08 2.70 5.14 86.30 0.44 3.15 16 7 C -0.07 -2.98 2.55 -10.79 -0.03 -3.01 16 8 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 9 C -0.13 -4.87 8.78 71.98 0.63 -4.24 16 10 C 0.02 0.95 3.76 29.85 0.11 1.06 16 11 C -0.61 -35.31 8.41 25.60 0.22 -35.10 16 12 H 0.05 2.93 7.06 -2.91 -0.02 2.91 16 13 C -0.04 -2.51 5.46 84.66 0.46 -2.05 16 14 N -0.94 -59.81 13.65 21.45 0.29 -59.52 16 15 Si 1.12 51.42 29.90 68.60 2.05 53.47 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 O -0.33 -8.01 9.14 -92.41 -0.84 -8.86 16 20 C 0.12 2.66 6.60 22.50 0.15 2.81 16 21 C -0.22 -4.24 8.23 22.37 0.18 -4.06 16 22 C -0.09 -1.41 10.04 22.25 0.22 -1.18 16 23 C -0.17 -2.55 10.04 22.28 0.22 -2.33 16 24 C -0.09 -1.45 10.04 22.26 0.22 -1.22 16 25 C -0.18 -3.76 9.99 22.36 0.22 -3.53 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.00 6.90 -2.39 -0.02 0.99 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.34 10.47 6.37 -89.70 -0.57 9.90 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.94 6.95 -2.39 -0.02 1.93 16 36 H 0.06 2.08 6.68 -2.39 -0.02 2.06 16 37 H -0.01 -0.83 8.00 -2.39 -0.02 -0.85 16 38 H -0.01 -0.77 8.01 -2.38 -0.02 -0.79 16 39 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 40 H 0.14 2.29 5.43 -2.91 -0.02 2.28 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -68.57 352.94 2.92 -65.65 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.49 Total: 21.14 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 4.27 Total: -47.91 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.05 Total: -83.49 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.84 Total: -8.86 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -68.57 2.92 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.344 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds