Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.52997 * 109.47297 * 239.99830 * 2 1 3 5 5 C 1.50699 * 109.47423 * 64.99871 * 4 2 1 6 6 H 1.08005 * 119.99504 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00310 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99728 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99887 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47222 * 60.00005 * 9 7 5 11 11 H 1.48497 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47142 * 299.99922 * 9 7 5 13 13 C 1.53001 * 109.47051 * 119.99530 * 2 1 3 14 14 N 1.46901 * 109.47531 * 294.99988 * 13 2 1 15 15 C 1.46900 * 111.00190 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47007 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47328 * 59.99624 * 16 15 14 18 18 C 1.52995 * 109.46712 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.46860 * 299.99803 * 16 15 14 20 20 C 1.35895 * 117.00174 * 155.33604 * 19 16 15 21 21 C 1.38738 * 120.05346 * 5.08102 * 20 19 16 22 22 C 1.38142 * 119.94277 * 179.74322 * 21 20 19 23 23 C 1.38266 * 120.05445 * 0.51229 * 22 21 20 24 24 C 1.38268 * 120.11463 * 359.76307 * 23 22 21 25 25 C 1.38146 * 120.05220 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46578 * 59.99971 * 1 2 3 28 28 H 1.09000 * 109.47154 * 300.00448 * 1 2 3 29 29 H 1.09003 * 109.47298 * 185.00381 * 4 2 1 30 30 H 1.09002 * 109.46917 * 304.99956 * 4 2 1 31 31 H 0.97000 * 119.99589 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46963 * 55.00365 * 13 2 1 33 33 H 1.09005 * 109.46890 * 174.99783 * 13 2 1 34 34 H 1.00904 * 110.99437 * 56.04121 * 14 13 2 35 35 H 1.09008 * 109.46654 * 300.00247 * 15 14 13 36 36 H 1.08992 * 109.46977 * 59.99926 * 15 14 13 37 37 H 1.08999 * 109.47520 * 299.99332 * 18 16 15 38 38 H 1.08998 * 109.47424 * 59.99814 * 18 16 15 39 39 H 1.09007 * 109.47143 * 179.97438 * 18 16 15 40 40 H 1.08001 * 120.02746 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.97596 * 180.22806 * 22 21 20 42 42 H 1.08000 * 119.94403 * 179.74421 * 23 22 21 43 43 H 1.07997 * 119.97019 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02378 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4024 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4989 0.5626 -5.2496 10 1 2.0920 1.9226 -5.1872 11 1 1.9938 -0.1375 -6.4621 12 1 0.0189 0.6703 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1258 -0.6263 3.6672 16 6 1.7024 0.1912 4.8893 17 1 0.6154 0.2680 4.9162 18 6 2.1959 -0.5006 6.1615 19 8 2.2705 1.4998 4.8070 20 6 1.6297 2.4938 5.4763 21 6 0.5398 2.1984 6.2823 22 6 -0.1066 3.2099 6.9659 23 6 0.3252 4.5173 6.8390 24 6 1.4076 4.8151 6.0319 25 6 2.0608 3.8064 5.3505 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 2.9222 -1.8427 -4.7317 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 0.6528 0.1795 2.4753 35 1 1.6921 -1.6244 3.7301 36 1 3.2126 -0.7035 3.6401 37 1 1.7622 -1.4986 6.2241 38 1 3.2829 -0.5778 6.1348 39 1 1.8947 0.0820 7.0321 40 1 0.1994 1.1779 6.3782 41 1 -0.9528 2.9800 7.5964 42 1 -0.1841 5.3072 7.3710 43 1 1.7426 5.8372 5.9341 44 1 2.9059 4.0397 4.7198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = -32.677294 kcal Electronic energy + Delta-G solvation = -20987.698630 eV Core-core repulsion = 17904.496389 eV Total energy + Delta-G solvation = -3083.202241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34101 -37.94938 -36.72178 -34.26912 -32.50582 -31.40409 -30.78625 -29.71155 -27.08429 -26.29209 -24.35872 -23.36783 -22.50951 -22.01906 -20.86591 -18.91650 -18.49893 -16.64410 -16.25326 -15.86297 -15.53193 -15.11268 -14.87940 -14.61333 -14.17786 -13.80371 -13.61183 -13.48663 -13.32761 -12.87820 -12.57754 -12.37547 -12.14837 -12.10323 -11.76639 -11.66593 -11.38873 -11.22917 -10.98305 -10.86204 -10.72903 -10.67612 -10.30989 -10.17319 -9.69149 -9.13408 -9.12318 -8.94918 -8.30373 -8.25012 -8.12013 -5.95270 -3.96294 1.20642 1.35259 3.12675 3.36483 3.40577 3.43411 3.68295 4.23056 4.50704 4.59249 4.70976 4.74585 4.86235 4.96826 5.05085 5.23749 5.26047 5.33960 5.40489 5.42543 5.46096 5.63188 5.71005 5.78952 5.84608 5.88381 5.90474 6.07676 6.22757 6.26284 6.27919 6.40006 6.48235 6.58141 6.67416 6.95170 7.12658 7.19712 7.34684 7.43966 7.64502 7.72488 7.88693 8.05098 8.49158 9.09837 9.66927 11.16310 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.003048 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.393041 B = 9184.576258 C = 9941.257459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.061 3.939 16 C 0.086 3.914 17 H 0.070 0.930 18 C -0.180 4.180 19 O -0.288 6.288 20 C 0.141 3.859 21 C -0.216 4.216 22 C -0.082 4.082 23 C -0.167 4.167 24 C -0.081 4.081 25 C -0.154 4.154 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.336 0.664 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 5.763 23.762 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.029 3.971 17 H 0.088 0.912 18 C -0.238 4.238 19 O -0.201 6.201 20 C 0.095 3.905 21 C -0.235 4.235 22 C -0.100 4.100 23 C -0.186 4.186 24 C -0.099 4.099 25 C -0.172 4.172 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.221 6.054 23.463 24.445 hybrid contribution -1.046 -0.473 -0.754 1.373 sum -4.266 5.582 22.709 23.771 Atomic orbital electron populations 1.21739 0.96750 1.00336 1.00267 1.21221 0.94806 1.00193 0.94096 0.91566 1.19102 0.96138 0.95311 0.90346 1.21210 1.34681 1.08247 0.91005 0.92614 1.25017 0.95336 0.95101 0.99088 1.69955 1.39078 1.21253 1.23459 0.86686 0.78843 0.80180 0.82463 1.20246 1.21389 1.20316 1.22150 1.00460 0.94240 0.89473 1.60498 1.19342 1.50550 1.01139 1.22056 1.02055 0.94033 0.88696 1.22496 0.97773 0.81214 0.95608 0.91197 1.22360 1.03162 1.01058 0.97187 1.86253 1.50335 1.16165 1.67367 1.19102 0.91357 0.88931 0.91085 1.21305 0.99141 1.00447 1.02621 1.20916 0.98614 0.92651 0.97848 1.21014 0.98958 0.96549 1.02058 1.20970 0.94950 0.98691 0.95293 1.20508 1.03188 0.89877 1.03663 0.94076 0.91846 0.95045 0.96653 0.96795 0.93059 0.95892 0.91364 0.84551 0.93587 0.89961 0.90961 0.91145 0.91749 0.85555 0.86163 0.86238 0.85581 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.76 2.54 -90.62 -0.23 -1.99 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.68 -10.35 6.37 -113.77 -0.72 -11.08 16 15 C 0.06 0.75 5.38 -3.82 -0.02 0.73 16 16 C 0.09 0.93 2.43 -26.73 -0.07 0.86 16 17 H 0.07 0.70 6.31 -51.93 -0.33 0.38 16 18 C -0.18 -1.52 9.17 37.16 0.34 -1.18 16 19 O -0.29 -3.84 9.67 -19.41 -0.19 -4.03 16 20 C 0.14 1.75 6.60 -39.21 -0.26 1.49 16 21 C -0.22 -2.28 8.23 -39.43 -0.32 -2.60 16 22 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 23 C -0.17 -1.54 10.04 -39.56 -0.40 -1.94 16 24 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 25 C -0.15 -1.80 9.99 -39.43 -0.39 -2.19 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 28 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.34 4.84 6.98 -39.29 -0.27 4.56 16 35 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.52 6.91 -51.93 -0.36 0.17 16 40 H 0.13 1.14 5.43 -52.49 -0.29 0.85 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.17 355.15 -9.57 -40.75 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.38 Total: 1.60 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.35 Total: -22.99 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.01 Total: -37.59 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.19 Total: -4.03 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.17 -9.57 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.068 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds