Wall clock time and date at job start Mon Mar 30 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.52997 * 109.47297 * 239.99830 * 2 1 3 5 5 C 1.50699 * 109.47423 * 64.99871 * 4 2 1 6 6 H 1.08005 * 119.99504 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00310 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99728 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99887 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47222 * 60.00005 * 9 7 5 11 11 H 1.48497 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47142 * 299.99922 * 9 7 5 13 13 C 1.53001 * 109.47051 * 119.99530 * 2 1 3 14 14 N 1.46901 * 109.47531 * 294.99988 * 13 2 1 15 15 C 1.46900 * 111.00190 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47007 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47328 * 59.99624 * 16 15 14 18 18 C 1.52995 * 109.46712 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.46860 * 299.99803 * 16 15 14 20 20 C 1.35895 * 117.00174 * 155.33604 * 19 16 15 21 21 C 1.38738 * 120.05346 * 5.08102 * 20 19 16 22 22 C 1.38142 * 119.94277 * 179.74322 * 21 20 19 23 23 C 1.38266 * 120.05445 * 0.51229 * 22 21 20 24 24 C 1.38268 * 120.11463 * 359.76307 * 23 22 21 25 25 C 1.38146 * 120.05220 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46578 * 59.99971 * 1 2 3 28 28 H 1.09000 * 109.47154 * 300.00448 * 1 2 3 29 29 H 1.09003 * 109.47298 * 185.00381 * 4 2 1 30 30 H 1.09002 * 109.46917 * 304.99956 * 4 2 1 31 31 H 0.97000 * 119.99589 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46963 * 55.00365 * 13 2 1 33 33 H 1.09005 * 109.46890 * 174.99783 * 13 2 1 34 34 H 1.00904 * 110.99437 * 56.04121 * 14 13 2 35 35 H 1.09008 * 109.46654 * 300.00247 * 15 14 13 36 36 H 1.08992 * 109.46977 * 59.99926 * 15 14 13 37 37 H 1.08999 * 109.47520 * 299.99332 * 18 16 15 38 38 H 1.08998 * 109.47424 * 59.99814 * 18 16 15 39 39 H 1.09007 * 109.47143 * 179.97438 * 18 16 15 40 40 H 1.08001 * 120.02746 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.97596 * 180.22806 * 22 21 20 42 42 H 1.08000 * 119.94403 * 179.74421 * 23 22 21 43 43 H 1.07997 * 119.97019 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02378 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4024 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4989 0.5626 -5.2496 10 1 2.0920 1.9226 -5.1872 11 1 1.9938 -0.1375 -6.4621 12 1 0.0189 0.6703 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1258 -0.6263 3.6672 16 6 1.7024 0.1912 4.8893 17 1 0.6154 0.2680 4.9162 18 6 2.1959 -0.5006 6.1615 19 8 2.2705 1.4998 4.8070 20 6 1.6297 2.4938 5.4763 21 6 0.5398 2.1984 6.2823 22 6 -0.1066 3.2099 6.9659 23 6 0.3252 4.5173 6.8390 24 6 1.4076 4.8151 6.0319 25 6 2.0608 3.8064 5.3505 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 3.1264 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 2.9222 -1.8427 -4.7317 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 0.6528 0.1795 2.4753 35 1 1.6921 -1.6244 3.7301 36 1 3.2126 -0.7035 3.6401 37 1 1.7622 -1.4986 6.2241 38 1 3.2829 -0.5778 6.1348 39 1 1.8947 0.0820 7.0321 40 1 0.1994 1.1779 6.3782 41 1 -0.9528 2.9800 7.5964 42 1 -0.1841 5.3072 7.3710 43 1 1.7426 5.8372 5.9341 44 1 2.9059 4.0397 4.7198 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:53 Heat of formation + Delta-G solvation = -50.781123 kcal Electronic energy + Delta-G solvation = -20988.483671 eV Core-core repulsion = 17904.496389 eV Total energy + Delta-G solvation = -3083.987282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16094 -38.89684 -38.05365 -35.77383 -34.22624 -32.60352 -31.63920 -30.47936 -28.97240 -27.60911 -25.85956 -24.23454 -23.79420 -23.20623 -21.73521 -20.59558 -19.31441 -18.53187 -17.43507 -16.70176 -16.66746 -16.38137 -16.23417 -15.68804 -15.47360 -15.09418 -14.73276 -14.52255 -14.26968 -14.15760 -14.02888 -13.41170 -13.34025 -13.25339 -13.14189 -12.98034 -12.75793 -12.58284 -12.38807 -12.24946 -12.09869 -11.93982 -11.76228 -11.53026 -11.46103 -11.08007 -10.90925 -10.53215 -9.88706 -9.33185 -9.05074 -8.17692 -6.26899 0.45239 0.57776 1.39774 1.42829 1.50461 2.31812 2.41993 2.92011 3.14585 3.15620 3.76696 3.95053 4.00104 4.09307 4.14365 4.21237 4.26644 4.33311 4.44787 4.47214 4.54481 4.57860 4.67519 4.71920 4.77220 4.84992 4.89626 4.93339 5.02704 5.14564 5.19221 5.23603 5.37093 5.46278 5.47175 5.54310 5.54722 5.66043 5.78998 5.88731 5.95220 6.05879 6.31095 6.46874 6.62867 6.88640 7.41239 8.94268 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.003048 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.393041 B = 9184.576258 C = 9941.257459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 H 0.051 0.949 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.079 3.921 14 N -0.690 5.690 15 C 0.061 3.939 16 C 0.086 3.914 17 H 0.080 0.920 18 C -0.173 4.173 19 O -0.315 6.315 20 C 0.118 3.882 21 C -0.221 4.221 22 C -0.085 4.085 23 C -0.169 4.169 24 C -0.085 4.085 25 C -0.180 4.180 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.063 0.937 29 H -0.015 1.015 30 H -0.008 1.008 31 H 0.262 0.738 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 6.648 25.236 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.050 4.050 14 N -0.323 5.323 15 C -0.069 4.069 16 C 0.030 3.970 17 H 0.098 0.902 18 C -0.231 4.231 19 O -0.229 6.229 20 C 0.072 3.928 21 C -0.240 4.240 22 C -0.103 4.103 23 C -0.187 4.187 24 C -0.103 4.103 25 C -0.198 4.198 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.004 0.996 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.077 6.948 24.960 26.402 hybrid contribution -0.457 -0.728 -1.150 1.436 sum -5.535 6.220 23.810 25.224 Atomic orbital electron populations 1.21633 0.94880 1.00772 1.00948 1.21016 0.96299 0.98807 0.93399 0.93067 1.18989 0.94146 0.94636 0.92579 1.21617 1.34612 1.08558 0.92148 0.92230 1.25951 0.95224 0.96109 1.02641 1.70091 1.40216 1.22934 1.24363 0.85560 0.78995 0.78728 0.78141 1.19421 1.20911 1.19080 1.21828 0.99550 0.94295 0.89333 1.60389 1.19874 1.50747 1.01253 1.22139 1.01589 0.95184 0.87944 1.22572 0.98290 0.80439 0.95707 0.90211 1.22311 1.02816 1.01912 0.96021 1.86207 1.51337 1.17179 1.68171 1.19339 0.92427 0.88880 0.92154 1.21504 0.98601 1.01573 1.02296 1.21304 0.99015 0.92460 0.97538 1.21391 0.98483 0.97376 1.01489 1.21262 0.94969 0.99227 0.94846 1.20688 1.03791 0.90620 1.04727 0.93724 0.93675 0.91787 0.99644 0.98942 0.92902 0.95266 0.92662 0.83838 0.91515 0.90937 0.88934 0.91803 0.91279 0.84223 0.83535 0.83698 0.83625 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.77 71.98 0.63 -4.01 16 2 C -0.08 -3.22 2.54 -10.79 -0.03 -3.25 16 3 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.03 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.68 8.41 25.60 0.22 -30.47 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.08 2.79 5.14 86.30 0.44 3.23 16 14 N -0.69 -20.33 6.37 -513.87 -3.27 -23.60 16 15 C 0.06 1.41 5.38 86.30 0.46 1.87 16 16 C 0.09 1.74 2.43 30.59 0.07 1.82 16 17 H 0.08 1.44 6.31 -2.39 -0.02 1.42 16 18 C -0.17 -2.62 9.17 71.98 0.66 -1.96 16 19 O -0.32 -8.35 9.67 -92.37 -0.89 -9.25 16 20 C 0.12 2.85 6.60 22.51 0.15 3.00 16 21 C -0.22 -4.26 8.23 22.37 0.18 -4.08 16 22 C -0.09 -1.38 10.04 22.25 0.22 -1.15 16 23 C -0.17 -2.70 10.04 22.28 0.22 -2.48 16 24 C -0.09 -1.56 10.04 22.25 0.22 -1.34 16 25 C -0.18 -4.22 9.99 22.37 0.22 -4.00 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.82 6.95 -2.39 -0.02 1.81 16 28 H 0.06 1.95 6.68 -2.39 -0.02 1.93 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.34 9.25 6.98 -89.69 -0.63 8.62 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.99 6.91 -2.38 -0.02 0.98 16 40 H 0.14 2.19 5.43 -2.91 -0.02 2.17 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -68.44 355.15 2.77 -65.67 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.34 Total: 18.15 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 4.28 Total: -40.50 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.99 Total: -81.24 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.89 Total: -9.25 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.44 2.77 -65.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.889 kcal (2) G-P(sol) polarization free energy of solvation -68.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds