Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 C 1.53005 * 109.46962 * 240.00178 * 2 1 3 5 5 C 1.50694 * 109.47314 * 65.00285 * 4 2 1 6 6 H 1.08004 * 120.00225 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00315 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99866 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00290 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46889 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46819 * 120.00169 * 9 7 5 12 12 H 1.48491 * 109.47368 * 240.00258 * 9 7 5 13 13 C 1.53002 * 109.47410 * 120.00356 * 2 1 3 14 14 N 1.46907 * 109.46793 * 294.99910 * 13 2 1 15 15 C 1.46900 * 110.99641 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.46619 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.47070 * 55.00278 * 16 15 14 18 18 C 1.53000 * 109.47233 * 294.99903 * 16 15 14 19 19 O 1.42904 * 109.46804 * 65.00261 * 18 16 15 20 20 C 1.50703 * 109.46966 * 175.00188 * 16 15 14 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 16 15 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 16 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 16 15 26 26 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47070 * 299.99941 * 1 2 3 28 28 H 1.09001 * 109.47576 * 60.00128 * 1 2 3 29 29 H 1.09006 * 109.47032 * 185.00111 * 4 2 1 30 30 H 1.08998 * 109.46911 * 304.99831 * 4 2 1 31 31 H 0.97002 * 120.00384 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47631 * 175.00021 * 13 2 1 33 33 H 1.09003 * 109.47002 * 54.99660 * 13 2 1 34 34 H 1.00899 * 110.99746 * 56.04436 * 14 13 2 35 35 H 1.09000 * 109.47154 * 60.00280 * 15 14 13 36 36 H 1.08996 * 109.47574 * 299.99823 * 15 14 13 37 37 H 1.09002 * 109.47069 * 184.99942 * 18 16 15 38 38 H 1.08991 * 109.47625 * 305.00262 * 18 16 15 39 39 H 0.96706 * 113.99847 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 16 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 0.7412 1.7740 -4.8434 11 1 2.7163 0.9684 -5.9963 12 1 0.6451 -0.2867 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1248 -0.6273 3.6672 16 6 1.7025 0.1909 4.8892 17 1 0.6236 0.3446 4.8683 18 6 2.4115 1.5465 4.8652 19 8 1.9647 2.2977 3.7346 20 6 2.0799 -0.5512 6.1453 21 6 3.4032 -0.8673 6.3902 22 6 3.7500 -1.5445 7.5444 23 6 2.7723 -1.9130 8.4496 24 6 1.4485 -1.6015 8.2022 25 6 1.1023 -0.9209 7.0499 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9235 -1.8416 -4.7318 32 1 3.1263 -0.7996 1.2056 33 1 1.6053 -1.7199 1.2951 34 1 0.6528 0.1792 2.4753 35 1 3.2117 -0.7052 3.6405 36 1 1.6904 -1.6250 3.7297 37 1 2.1804 2.0936 5.7792 38 1 3.4882 1.3923 4.7964 39 1 2.3733 3.1706 3.6560 40 1 4.1666 -0.5820 5.6815 41 1 4.7842 -1.7881 7.7375 42 1 3.0429 -2.4444 9.3501 43 1 0.6847 -1.8897 8.9093 44 1 0.0679 -0.6775 6.8567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = -45.330391 kcal Electronic energy + Delta-G solvation = -21069.600382 eV Core-core repulsion = 17985.849462 eV Total energy + Delta-G solvation = -3083.750920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81416 -37.47747 -36.28015 -34.43358 -32.86464 -31.51133 -31.13542 -28.75523 -26.83502 -25.82076 -24.27248 -23.21830 -22.62527 -21.78190 -20.21596 -18.79136 -17.55696 -16.65101 -16.32795 -15.75976 -15.38645 -15.24528 -14.65019 -14.55045 -14.08224 -13.86085 -13.56862 -13.35052 -13.07382 -12.81379 -12.71086 -12.17516 -12.10181 -11.72721 -11.53063 -11.35448 -11.19622 -11.06626 -10.81935 -10.78992 -10.60250 -10.25877 -10.08492 -9.76133 -9.60789 -9.14782 -9.09315 -8.94616 -8.82819 -8.27737 -7.82347 -5.92307 -3.92887 1.11025 1.17185 3.35608 3.42961 3.47519 3.53711 4.10078 4.51756 4.55013 4.69287 4.75722 4.87033 4.88225 5.08884 5.22902 5.29916 5.30765 5.34364 5.43524 5.58053 5.62853 5.77212 5.82290 5.85997 5.91790 5.97026 6.03980 6.18790 6.24322 6.28386 6.38246 6.45626 6.60095 6.68638 6.77086 7.08468 7.21163 7.28610 7.56689 7.77440 7.85344 7.88471 7.96452 8.09171 8.53649 9.14038 9.70191 11.19380 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.002870 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.275667 B = 9752.467790 C =10025.843242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.667 5.667 15 C 0.072 3.928 16 C -0.048 4.048 17 H 0.083 0.917 18 C 0.098 3.902 19 O -0.540 6.540 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.337 0.663 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.369 0.631 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 2.197 25.269 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.084 0.916 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.057 4.057 16 C -0.067 4.067 17 H 0.101 0.899 18 C 0.019 3.981 19 O -0.343 6.343 20 C -0.073 4.073 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.214 0.786 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.155 1.965 24.999 25.076 hybrid contribution -0.416 0.017 -0.687 0.803 sum -0.572 1.982 24.312 24.399 Atomic orbital electron populations 1.21725 0.96835 1.00198 1.00263 1.21174 0.94740 1.00089 0.93984 0.91582 1.19123 0.96064 0.95339 0.90533 1.21297 1.34262 1.08204 0.90992 0.92507 1.25028 0.95428 0.95118 0.99092 1.69980 1.39346 1.21319 1.23168 0.86581 0.78227 0.80141 0.83335 1.19742 1.21129 1.21170 1.22124 1.00031 0.94185 0.90062 1.60472 1.19586 1.49422 1.00351 1.21888 1.00345 0.94136 0.89373 1.20158 1.01264 0.93754 0.91558 0.89899 1.21905 0.96764 0.91305 0.88096 1.86739 1.68940 1.31735 1.46875 1.19729 0.93590 0.98478 0.95506 1.21093 0.95888 0.98671 0.97390 1.21164 0.99466 0.98619 0.94442 1.21154 0.93217 1.00441 0.99542 1.21136 0.96393 0.98900 0.97378 1.21103 0.99141 0.98771 0.94181 0.94276 0.94815 0.92037 0.96764 0.96876 0.93227 0.91891 0.96436 0.84403 0.91406 0.95921 0.94869 0.94116 0.78563 0.85878 0.86052 0.86239 0.86118 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.77 37.15 0.33 -2.28 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.59 8.41 -34.44 -0.29 -14.88 16 6 H 0.06 1.59 7.06 -52.48 -0.37 1.22 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.06 1.19 5.14 -3.82 -0.02 1.17 16 14 N -0.67 -10.47 4.82 -113.77 -0.55 -11.02 16 15 C 0.07 0.96 4.81 -3.82 -0.02 0.95 16 16 C -0.05 -0.54 2.50 -91.77 -0.23 -0.77 16 17 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 18 C 0.10 1.04 6.17 37.16 0.23 1.27 16 19 O -0.54 -6.64 11.98 -35.23 -0.42 -7.06 16 20 C -0.07 -0.74 4.78 -104.62 -0.50 -1.24 16 21 C -0.11 -1.09 8.81 -39.58 -0.35 -1.44 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 25 C -0.11 -1.07 9.67 -39.58 -0.38 -1.46 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.34 5.25 6.98 -39.29 -0.27 4.97 16 35 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.42 7.58 -51.93 -0.39 0.03 16 39 H 0.37 3.16 9.12 45.56 0.42 3.58 16 40 H 0.12 1.12 7.22 -52.48 -0.38 0.74 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.99 7.95 -52.48 -0.42 0.58 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -32.01 355.20 -9.50 -41.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.71 Total: 3.81 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.88 Total: -22.85 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.19 Total: -37.80 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.42 Total: -7.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.01 -9.50 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.827 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds