Wall clock time and date at job start Mon Mar 30 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 C 1.53005 * 109.46962 * 240.00178 * 2 1 3 5 5 C 1.50694 * 109.47314 * 65.00285 * 4 2 1 6 6 H 1.08004 * 120.00225 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00315 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99866 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00290 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46889 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46819 * 120.00169 * 9 7 5 12 12 H 1.48491 * 109.47368 * 240.00258 * 9 7 5 13 13 C 1.53002 * 109.47410 * 120.00356 * 2 1 3 14 14 N 1.46907 * 109.46793 * 294.99910 * 13 2 1 15 15 C 1.46900 * 110.99641 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.46619 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.47070 * 55.00278 * 16 15 14 18 18 C 1.53000 * 109.47233 * 294.99903 * 16 15 14 19 19 O 1.42904 * 109.46804 * 65.00261 * 18 16 15 20 20 C 1.50703 * 109.46966 * 175.00188 * 16 15 14 21 21 C 1.38237 * 119.99747 * 59.72563 * 20 16 15 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 16 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 240.00114 * 20 16 15 26 26 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47070 * 299.99941 * 1 2 3 28 28 H 1.09001 * 109.47576 * 60.00128 * 1 2 3 29 29 H 1.09006 * 109.47032 * 185.00111 * 4 2 1 30 30 H 1.08998 * 109.46911 * 304.99831 * 4 2 1 31 31 H 0.97002 * 120.00384 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47631 * 175.00021 * 13 2 1 33 33 H 1.09003 * 109.47002 * 54.99660 * 13 2 1 34 34 H 1.00899 * 110.99746 * 56.04436 * 14 13 2 35 35 H 1.09000 * 109.47154 * 60.00280 * 15 14 13 36 36 H 1.08996 * 109.47574 * 299.99823 * 15 14 13 37 37 H 1.09002 * 109.47069 * 184.99942 * 18 16 15 38 38 H 1.08991 * 109.47625 * 305.00262 * 18 16 15 39 39 H 0.96706 * 113.99847 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.00234 * 0.02562 * 21 20 16 41 41 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 42 42 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 43 43 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.99991 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6763 -1.5186 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 0.7412 1.7740 -4.8434 11 1 2.7163 0.9684 -5.9963 12 1 0.6451 -0.2867 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1248 -0.6273 3.6672 16 6 1.7025 0.1909 4.8892 17 1 0.6236 0.3446 4.8683 18 6 2.4115 1.5465 4.8652 19 8 1.9647 2.2977 3.7346 20 6 2.0799 -0.5512 6.1453 21 6 3.4032 -0.8673 6.3902 22 6 3.7500 -1.5445 7.5444 23 6 2.7723 -1.9130 8.4496 24 6 1.4485 -1.6015 8.2022 25 6 1.1023 -0.9209 7.0499 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2057 30 1 1.6053 -1.7198 -1.2952 31 1 2.9235 -1.8416 -4.7318 32 1 3.1263 -0.7996 1.2056 33 1 1.6053 -1.7199 1.2951 34 1 0.6528 0.1792 2.4753 35 1 3.2117 -0.7052 3.6405 36 1 1.6904 -1.6250 3.7297 37 1 2.1804 2.0936 5.7792 38 1 3.4882 1.3923 4.7964 39 1 2.3733 3.1706 3.6560 40 1 4.1666 -0.5820 5.6815 41 1 4.7842 -1.7881 7.7375 42 1 3.0429 -2.4444 9.3501 43 1 0.6847 -1.8897 8.9093 44 1 0.0679 -0.6775 6.8567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602564888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:00 Heat of formation + Delta-G solvation = -65.399305 kcal Electronic energy + Delta-G solvation = -21070.470635 eV Core-core repulsion = 17985.849462 eV Total energy + Delta-G solvation = -3084.621174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55060 -38.62170 -37.56114 -35.76758 -34.50723 -33.05553 -31.78856 -29.74684 -28.73207 -27.19762 -25.70439 -24.22748 -23.73637 -22.97632 -21.16859 -20.45219 -18.56558 -18.30968 -17.35900 -16.84938 -16.62243 -16.46096 -15.99418 -15.55162 -15.38029 -15.10929 -14.68759 -14.40370 -14.22807 -14.14469 -13.77220 -13.52957 -13.39705 -13.26568 -13.15283 -12.75832 -12.59149 -12.43612 -12.19083 -11.99880 -11.94173 -11.80569 -11.61624 -11.41950 -11.04472 -10.92032 -10.59946 -10.53264 -9.80976 -9.63424 -9.12916 -8.16599 -6.25679 0.42863 0.51000 1.40476 1.40720 1.54280 2.42923 2.85621 3.16147 3.16728 3.62220 3.76860 4.10397 4.12720 4.17861 4.24207 4.28596 4.32625 4.42209 4.44409 4.49766 4.62669 4.64397 4.68333 4.74241 4.83673 4.88783 4.93383 5.06303 5.09367 5.13948 5.19690 5.25982 5.41458 5.49119 5.57368 5.59559 5.63977 5.72779 5.82378 5.91120 6.12479 6.18107 6.34255 6.61967 6.90491 7.14166 7.42503 8.95897 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034085 B = 0.002870 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.275667 B = 9752.467790 C =10025.843242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.663 5.663 15 C 0.075 3.925 16 C -0.039 4.039 17 H 0.081 0.919 18 C 0.099 3.901 19 O -0.563 6.563 20 C -0.085 4.085 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.045 0.955 29 H -0.015 1.015 30 H -0.012 1.012 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.340 0.660 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.383 0.617 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 2.989 26.623 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.294 5.294 15 C -0.055 4.055 16 C -0.058 4.058 17 H 0.099 0.901 18 C 0.021 3.979 19 O -0.369 6.369 20 C -0.086 4.086 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.231 0.769 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.936 2.775 26.374 26.536 hybrid contribution -0.133 -0.265 -1.032 1.074 sum -1.069 2.510 25.342 25.488 Atomic orbital electron populations 1.21623 0.95127 1.00406 1.01010 1.20959 0.96066 0.98915 0.93022 0.92529 1.19015 0.94108 0.94521 0.92852 1.21667 1.34237 1.08496 0.92030 0.92083 1.25977 0.95292 0.96136 1.02718 1.70114 1.40456 1.23028 1.24202 0.85432 0.78082 0.78877 0.78876 1.18532 1.20507 1.20489 1.21833 0.99216 0.93913 0.90232 1.60414 1.19814 1.49051 1.00164 1.21912 1.00059 0.94274 0.89210 1.20040 1.01092 0.93746 0.90928 0.90074 1.21935 0.96693 0.91083 0.88215 1.86676 1.69598 1.32965 1.47629 1.19688 0.94121 0.99347 0.95457 1.21211 0.95808 0.99267 0.98052 1.21437 1.00650 0.98233 0.94122 1.21496 0.93062 0.99954 1.00128 1.21444 0.97188 0.98295 0.97358 1.21304 0.99489 0.98982 0.94513 0.94323 0.91676 0.93591 0.99658 0.99386 0.92959 0.92943 0.96729 0.84034 0.91749 0.96246 0.93505 0.94043 0.76899 0.85909 0.84384 0.84005 0.84043 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 8.77 71.98 0.63 -4.16 16 2 C -0.07 -3.05 2.55 -10.79 -0.03 -3.08 16 3 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.03 1.78 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.58 8.41 25.60 0.22 -30.37 16 6 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 8 N -0.94 -58.50 13.29 21.45 0.28 -58.21 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 C 0.08 2.88 5.14 86.30 0.44 3.33 16 14 N -0.66 -20.36 4.82 -513.87 -2.48 -22.84 16 15 C 0.07 1.95 4.81 86.30 0.42 2.37 16 16 C -0.04 -0.83 2.50 -11.54 -0.03 -0.86 16 17 H 0.08 1.75 7.88 -2.39 -0.02 1.73 16 18 C 0.10 2.00 6.17 71.98 0.44 2.44 16 19 O -0.56 -13.18 11.98 -148.98 -1.78 -14.97 16 20 C -0.09 -1.66 4.78 -19.87 -0.09 -1.75 16 21 C -0.13 -2.31 8.81 22.27 0.20 -2.12 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 2.09 6.68 -2.39 -0.02 2.08 16 28 H 0.04 1.90 6.95 -2.39 -0.02 1.88 16 29 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.34 10.11 6.98 -89.69 -0.63 9.48 16 35 H 0.06 1.72 7.55 -2.39 -0.02 1.70 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.04 0.82 7.58 -2.39 -0.02 0.81 16 39 H 0.38 6.14 9.12 -74.05 -0.68 5.46 16 40 H 0.12 2.17 7.22 -2.91 -0.02 2.15 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.13 1.92 7.95 -2.91 -0.02 1.90 16 Total: -1.00 -68.72 355.20 1.40 -67.32 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.33 Total: 20.31 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.68 Total: -39.02 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.19 Total: -81.05 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.78 Total: -14.97 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.72 1.40 -67.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.923 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds