Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46896 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47334 * 119.99554 * 9 7 5 12 12 H 1.48497 * 109.47432 * 239.99921 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47289 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.46191 * 304.99814 * 16 15 14 18 18 C 1.52999 * 109.46989 * 64.99587 * 16 15 14 19 19 O 1.42899 * 109.46616 * 185.00393 * 18 16 15 20 20 C 1.50699 * 109.47223 * 185.00114 * 16 15 14 21 21 C 1.38240 * 119.99434 * 299.72368 * 20 16 15 22 22 C 1.38244 * 119.99310 * 179.78853 * 21 20 16 23 23 C 1.38233 * 120.00033 * 0.44225 * 22 21 20 24 24 C 1.38238 * 120.00019 * 359.80893 * 23 22 21 25 25 C 1.38227 * 120.00087 * 119.99746 * 20 16 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 31 31 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 33 33 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 34 34 H 1.00899 * 110.99514 * 303.95543 * 14 13 2 35 35 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 36 36 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 37 37 H 1.09002 * 109.47207 * 305.00304 * 18 16 15 38 38 H 1.08995 * 109.46756 * 65.00442 * 18 16 15 39 39 H 0.96703 * 113.99386 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.00193 * 359.97438 * 21 20 16 41 41 H 1.07994 * 119.99457 * 180.27019 * 22 21 20 42 42 H 1.07996 * 119.99840 * 179.83223 * 23 22 21 43 43 H 1.08004 * 119.99626 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00339 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.7421 1.7744 4.8434 11 1 0.6439 -0.2855 6.1184 12 1 2.7169 0.9668 5.9966 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 0.6237 0.3446 -4.8683 18 6 2.4115 1.5466 -4.8652 19 8 1.9302 2.3548 -5.9408 20 6 2.0800 -0.5512 -6.1454 21 6 3.4047 -0.8572 -6.3956 22 6 3.7504 -1.5418 -7.5458 23 6 2.7726 -1.9123 -8.4500 24 6 1.4486 -1.6016 -8.2021 25 6 1.1024 -0.9208 -7.0499 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9213 -1.8429 4.7319 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 0.6529 0.1793 -2.4753 35 1 3.2118 -0.7051 -3.6405 36 1 1.6905 -1.6250 -3.7296 37 1 2.2096 2.0454 -3.9172 38 1 3.4855 1.3969 -4.9754 39 1 2.3373 3.2307 -5.9873 40 1 4.1690 -0.5641 -5.6912 41 1 4.7847 -1.7847 -7.7392 42 1 3.0430 -2.4447 -9.3498 43 1 0.6847 -1.8907 -8.9088 44 1 0.0679 -0.6782 -6.8563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -51.492790 kcal Electronic energy + Delta-G solvation = -20928.402953 eV Core-core repulsion = 17844.384811 eV Total energy + Delta-G solvation = -3084.018142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75978 -37.50991 -36.58709 -34.67112 -32.84462 -31.54595 -31.02712 -28.87837 -26.89873 -25.82165 -24.40538 -23.20888 -22.61716 -21.88355 -20.20780 -18.93323 -17.36585 -17.10545 -16.40778 -15.75580 -15.64473 -15.16647 -14.66028 -14.50060 -14.14137 -13.87181 -13.65943 -13.44720 -13.18098 -12.83413 -12.64373 -12.25095 -12.20112 -11.87818 -11.60348 -11.49287 -11.27804 -11.09993 -10.88040 -10.78420 -10.64873 -10.32293 -10.19711 -9.98717 -9.72530 -9.17359 -9.02857 -8.97148 -8.77363 -8.33484 -8.18478 -5.97910 -3.99030 1.25022 1.29175 3.31861 3.39541 3.43495 3.66499 4.09839 4.26034 4.48362 4.71105 4.79604 4.87969 4.99186 5.07993 5.15414 5.34118 5.37967 5.38016 5.43299 5.50996 5.68969 5.76169 5.78103 5.83629 5.88537 5.94683 6.00415 6.05725 6.25714 6.34845 6.38470 6.45865 6.54749 6.55363 6.88579 6.92277 7.10447 7.16418 7.32336 7.56559 7.60855 7.69953 7.85622 8.02491 8.46211 9.07673 9.64495 11.13664 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032944 B = 0.002782 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.735376 B =10062.726560 C =10372.235060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.691 5.691 15 C 0.067 3.933 16 C -0.046 4.046 17 H 0.083 0.917 18 C 0.088 3.912 19 O -0.576 6.576 20 C -0.061 4.061 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.111 4.111 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.339 0.661 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.376 0.624 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 2.019 -23.483 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.322 5.322 15 C -0.062 4.062 16 C -0.065 4.065 17 H 0.101 0.899 18 C 0.010 3.990 19 O -0.381 6.381 20 C -0.062 4.062 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.129 4.129 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.222 0.778 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.108 1.787 -23.415 23.483 hybrid contribution -0.423 0.073 0.983 1.072 sum -0.530 1.860 -22.432 22.516 Atomic orbital electron populations 1.21745 0.96684 1.00450 1.00288 1.21216 0.94869 1.00054 0.94119 0.91651 1.19118 0.96129 0.95391 0.90392 1.21274 1.34530 1.08238 0.90970 0.92509 1.25027 0.95353 0.95102 0.99125 1.69976 1.39204 1.21237 1.23266 0.86575 0.78254 0.80124 0.83291 1.19752 1.21127 1.21082 1.22144 1.00366 0.94504 0.89412 1.60622 1.19716 1.50492 1.01419 1.21922 1.00918 0.94861 0.88542 1.20175 1.01335 0.93326 0.91621 0.89873 1.22186 0.96301 0.90637 0.89838 1.86459 1.68672 1.30240 1.52745 1.19731 0.93436 0.97256 0.95729 1.21008 0.95797 0.99011 0.97526 1.21110 0.99294 0.98790 0.94567 1.21102 0.93239 1.00858 0.99498 1.21113 0.96328 0.99019 0.97376 1.21046 0.99122 0.98480 0.94231 0.94031 0.94947 0.91856 0.96754 0.96673 0.93154 0.91450 0.95734 0.84262 0.90776 0.94697 0.91375 0.93952 0.77755 0.86198 0.86260 0.86412 0.86308 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.68 2.54 -90.63 -0.23 -1.91 16 3 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 14 N -0.69 -9.67 5.87 -113.77 -0.67 -10.34 16 15 C 0.07 0.82 4.82 -3.82 -0.02 0.80 16 16 C -0.05 -0.51 2.41 -91.77 -0.22 -0.73 16 17 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 18 C 0.09 0.96 6.26 37.16 0.23 1.19 16 19 O -0.58 -6.26 13.41 -35.23 -0.47 -6.74 16 20 C -0.06 -0.69 4.55 -104.63 -0.48 -1.16 16 21 C -0.12 -1.23 8.71 -39.58 -0.34 -1.57 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.11 -1.20 9.67 -39.59 -0.38 -1.58 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.34 4.56 6.98 -39.29 -0.27 4.28 16 35 H 0.07 0.90 7.59 -51.93 -0.39 0.50 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 38 H 0.04 0.44 7.21 -51.93 -0.37 0.06 16 39 H 0.38 2.51 9.12 45.56 0.42 2.92 16 40 H 0.12 1.16 7.13 -52.49 -0.37 0.78 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 44 H 0.12 1.16 7.95 -52.49 -0.42 0.74 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -31.27 356.40 -9.56 -40.82 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.66 Total: 3.77 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.84 Total: -23.30 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.07 Total: -36.58 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.47 Total: -6.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.27 -9.56 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.670 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds