Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99876 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00180 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46896 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47334 * 119.99554 * 9 7 5 12 12 H 1.48497 * 109.47432 * 239.99921 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 N 1.46910 * 109.47127 * 65.00091 * 13 2 1 15 15 C 1.46897 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47289 * 180.02562 * 15 14 13 17 17 H 1.09003 * 109.46191 * 304.99814 * 16 15 14 18 18 C 1.52999 * 109.46989 * 64.99587 * 16 15 14 19 19 O 1.42899 * 109.46616 * 185.00393 * 18 16 15 20 20 C 1.50699 * 109.47223 * 185.00114 * 16 15 14 21 21 C 1.38240 * 119.99434 * 299.72368 * 20 16 15 22 22 C 1.38244 * 119.99310 * 179.78853 * 21 20 16 23 23 C 1.38233 * 120.00033 * 0.44225 * 22 21 20 24 24 C 1.38238 * 120.00019 * 359.80893 * 23 22 21 25 25 C 1.38227 * 120.00087 * 119.99746 * 20 16 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 31 31 H 0.96996 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 33 33 H 1.09001 * 109.47563 * 305.00337 * 13 2 1 34 34 H 1.00899 * 110.99514 * 303.95543 * 14 13 2 35 35 H 1.09005 * 109.47233 * 300.00192 * 15 14 13 36 36 H 1.09006 * 109.47211 * 59.99522 * 15 14 13 37 37 H 1.09002 * 109.47207 * 305.00304 * 18 16 15 38 38 H 1.08995 * 109.46756 * 65.00442 * 18 16 15 39 39 H 0.96703 * 113.99386 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.00193 * 359.97438 * 21 20 16 41 41 H 1.07994 * 119.99457 * 180.27019 * 22 21 20 42 42 H 1.07996 * 119.99840 * 179.83223 * 23 22 21 43 43 H 1.08004 * 119.99626 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00339 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2497 10 1 0.7421 1.7744 4.8434 11 1 0.6439 -0.2855 6.1184 12 1 2.7169 0.9668 5.9966 13 6 2.0400 -0.7212 -1.2491 14 7 1.6515 0.0374 -2.4456 15 6 2.1249 -0.6271 -3.6672 16 6 1.7026 0.1909 -4.8892 17 1 0.6237 0.3446 -4.8683 18 6 2.4115 1.5466 -4.8652 19 8 1.9302 2.3548 -5.9408 20 6 2.0800 -0.5512 -6.1454 21 6 3.4047 -0.8572 -6.3956 22 6 3.7504 -1.5418 -7.5458 23 6 2.7726 -1.9123 -8.4500 24 6 1.4486 -1.6016 -8.2021 25 6 1.1024 -0.9208 -7.0499 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.9213 -1.8429 4.7319 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 0.6529 0.1793 -2.4753 35 1 3.2118 -0.7051 -3.6405 36 1 1.6905 -1.6250 -3.7296 37 1 2.2096 2.0454 -3.9172 38 1 3.4855 1.3969 -4.9754 39 1 2.3373 3.2307 -5.9873 40 1 4.1690 -0.5641 -5.6912 41 1 4.7847 -1.7847 -7.7392 42 1 3.0430 -2.4447 -9.3498 43 1 0.6847 -1.8907 -8.9088 44 1 0.0679 -0.6782 -6.8563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602564889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = -71.518355 kcal Electronic energy + Delta-G solvation = -20929.271326 eV Core-core repulsion = 17844.384811 eV Total energy + Delta-G solvation = -3084.886516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55244 -38.63228 -37.69005 -36.00435 -34.50692 -32.98964 -31.76076 -29.88270 -28.74023 -27.13482 -25.71055 -24.32858 -23.74801 -23.00490 -21.15752 -20.49616 -18.55099 -18.19240 -17.82366 -16.93025 -16.64898 -16.44022 -16.03591 -15.55860 -15.31403 -15.01191 -14.93454 -14.43225 -14.20971 -14.07134 -13.95193 -13.58798 -13.38881 -13.28843 -13.06115 -12.77331 -12.63113 -12.52667 -12.25345 -12.19737 -11.92878 -11.82672 -11.56782 -11.42259 -11.05644 -10.91532 -10.81507 -10.53485 -9.77663 -9.56644 -9.36758 -8.17118 -6.25994 0.49396 0.54216 1.40179 1.40797 1.53658 2.42362 2.89547 3.16513 3.19150 3.30688 3.84806 4.01891 4.13708 4.18375 4.22067 4.26898 4.31354 4.35001 4.46248 4.53294 4.62890 4.65727 4.69230 4.74705 4.80910 4.88483 4.95964 5.04403 5.07852 5.17953 5.21430 5.25464 5.40029 5.49685 5.56308 5.61609 5.65741 5.76423 5.80702 5.90313 6.04182 6.16084 6.31713 6.46996 6.90529 6.94106 7.42361 8.95196 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032944 B = 0.002782 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.735376 B =10062.726560 C =10372.235060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.073 3.927 16 C -0.038 4.038 17 H 0.080 0.920 18 C 0.092 3.908 19 O -0.590 6.590 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.128 4.128 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.045 0.955 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.345 0.655 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.393 0.607 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 2.827 -24.722 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.317 5.317 15 C -0.056 4.056 16 C -0.057 4.057 17 H 0.098 0.902 18 C 0.015 3.985 19 O -0.397 6.397 20 C -0.076 4.076 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.146 4.146 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.242 0.758 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.684 2.619 -24.675 24.823 hybrid contribution -0.216 -0.195 1.283 1.316 sum -0.900 2.424 -23.391 23.534 Atomic orbital electron populations 1.21659 0.95062 1.00612 1.01138 1.21007 0.96144 0.99075 0.93114 0.92269 1.19016 0.94254 0.94562 0.92749 1.21674 1.34254 1.08490 0.92040 0.92044 1.25955 0.95324 0.96110 1.02676 1.70108 1.40462 1.22963 1.24191 0.85460 0.78054 0.78905 0.79017 1.18533 1.20600 1.20582 1.21839 0.99732 0.94205 0.89421 1.60534 1.20189 1.50003 1.00998 1.21889 1.00878 0.94821 0.88012 1.20055 1.01076 0.93417 0.91170 0.90202 1.22098 0.96492 0.90420 0.89520 1.86416 1.69188 1.31517 1.52618 1.19788 0.93952 0.97976 0.95900 1.21173 0.95750 0.99525 0.98231 1.21415 1.00518 0.98311 0.94242 1.21448 0.93033 1.00481 1.00176 1.21415 0.97210 0.98494 0.97340 1.21248 0.99409 0.99076 0.94830 0.94204 0.91425 0.93616 0.99289 0.99456 0.92974 0.92233 0.95977 0.83595 0.90715 0.94890 0.92118 0.93484 0.75768 0.85784 0.84410 0.84124 0.84350 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.77 71.98 0.63 -3.94 16 2 C -0.07 -3.00 2.54 -10.80 -0.03 -3.02 16 3 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.67 4.45 29.85 0.13 1.80 16 5 C -0.53 -29.73 8.41 25.60 0.22 -29.51 16 6 H 0.06 3.34 7.06 -2.92 -0.02 3.32 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.08 2.60 5.14 86.30 0.44 3.04 16 14 N -0.69 -18.40 5.87 -513.87 -3.02 -21.42 16 15 C 0.07 1.71 4.82 86.30 0.42 2.13 16 16 C -0.04 -0.82 2.41 -11.54 -0.03 -0.85 16 17 H 0.08 1.75 7.88 -2.39 -0.02 1.73 16 18 C 0.09 1.90 6.26 71.98 0.45 2.35 16 19 O -0.59 -12.02 13.41 -148.98 -2.00 -14.02 16 20 C -0.08 -1.63 4.55 -19.87 -0.09 -1.72 16 21 C -0.13 -2.59 8.71 22.27 0.19 -2.40 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.61 9.67 22.27 0.22 -2.40 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 28 H 0.04 1.79 6.95 -2.38 -0.02 1.77 16 29 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.34 8.63 6.98 -89.69 -0.63 8.01 16 35 H 0.07 1.75 7.59 -2.38 -0.02 1.73 16 36 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 1.33 7.62 -2.39 -0.02 1.31 16 38 H 0.05 0.92 7.21 -2.39 -0.02 0.90 16 39 H 0.39 4.67 9.12 -74.06 -0.68 3.99 16 40 H 0.12 2.28 7.13 -2.91 -0.02 2.26 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.12 2.29 7.95 -2.91 -0.02 2.27 16 Total: -1.00 -67.09 356.40 0.66 -66.43 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.33 Total: 19.83 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.69 Total: -40.27 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -2.73 Total: -78.53 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -2.00 Total: -14.02 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.09 0.66 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.088 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds