Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.46805 * 240.00355 * 2 1 3 5 5 C 1.50702 * 109.47522 * 65.00079 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53001 * 109.47328 * 120.00328 * 2 1 3 14 14 N 1.46898 * 109.47205 * 294.99944 * 13 2 1 15 15 C 1.46898 * 111.00204 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47314 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47469 * 64.99162 * 16 15 14 18 18 C 1.42893 * 113.99816 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.46823 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00070 * 269.72560 * 19 18 17 21 21 C 1.38238 * 120.00048 * 179.76604 * 20 19 18 22 22 C 1.38239 * 119.99780 * 0.50747 * 21 20 19 23 23 C 1.38230 * 119.99742 * 359.75047 * 22 21 20 24 24 C 1.38227 * 120.00386 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47607 * 59.99437 * 1 2 3 26 26 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46596 * 299.99619 * 1 2 3 28 28 H 1.09000 * 109.47527 * 304.99678 * 4 2 1 29 29 H 1.09001 * 109.47054 * 184.99768 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.08995 * 109.46978 * 54.99904 * 13 2 1 32 32 H 1.08999 * 109.47150 * 174.99508 * 13 2 1 33 33 H 1.00893 * 111.00163 * 56.04269 * 14 13 2 34 34 H 1.08999 * 109.46334 * 299.99582 * 15 14 13 35 35 H 1.09000 * 109.47222 * 59.99443 * 15 14 13 36 36 H 1.08997 * 109.47112 * 184.99868 * 16 15 14 37 37 H 1.09004 * 109.46581 * 304.99593 * 16 15 14 38 38 H 1.09001 * 109.47582 * 299.99886 * 18 17 16 39 39 H 1.08998 * 109.47659 * 60.00659 * 18 17 16 40 40 H 1.08003 * 120.00049 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.00405 * 180.22672 * 21 20 19 42 42 H 1.08001 * 119.99978 * 179.71967 * 22 21 20 43 43 H 1.08011 * 119.99608 * 179.97438 * 23 22 21 44 44 H 1.08007 * 119.99945 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 1.6396 0.2743 -4.7997 9 14 2.9625 -1.9888 -3.9030 10 1 4.4159 -1.6845 -3.8861 11 1 2.6337 -2.8968 -2.7749 12 1 2.6093 -2.6463 -5.1868 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7025 0.1906 4.8892 17 8 0.2771 0.1937 4.9898 18 6 -0.2253 0.9341 6.1039 19 6 -1.7310 0.8694 6.1121 20 6 -2.4677 1.8296 5.4441 21 6 -3.8487 1.7675 5.4476 22 6 -4.4931 0.7511 6.1279 23 6 -3.7565 -0.2059 6.8003 24 6 -2.3755 -0.1471 6.7920 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6054 -1.7198 -1.2953 29 1 3.1262 -0.7994 -1.2057 30 1 1.8831 -0.0508 -5.6805 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7996 1.2055 33 1 0.6530 0.1792 2.4753 34 1 1.6922 -1.6247 3.7299 35 1 3.2128 -0.7039 3.6399 36 1 2.1293 -0.2531 5.7887 37 1 2.0615 1.2144 4.7836 38 1 0.1614 0.5062 7.0288 39 1 0.0935 1.9733 6.0232 40 1 -1.9643 2.6264 4.9167 41 1 -4.4243 2.5155 4.9227 42 1 -5.5721 0.7052 6.1344 43 1 -4.2600 -0.9998 7.3321 44 1 -1.7999 -0.8947 7.3177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602566362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -39.526197 kcal Electronic energy + Delta-G solvation = -20615.274883 eV Core-core repulsion = 17531.775651 eV Total energy + Delta-G solvation = -3083.499232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60914 -38.12151 -36.73924 -34.08893 -32.35072 -31.77414 -31.13398 -29.01179 -27.22286 -26.06296 -24.97644 -22.81994 -22.28487 -21.57300 -21.50565 -18.94168 -17.27031 -16.79044 -16.72984 -16.32507 -15.76813 -15.40632 -15.05165 -14.43884 -14.25319 -13.87373 -13.63835 -13.58819 -13.29578 -12.93562 -12.71908 -12.35342 -12.25803 -11.88409 -11.79948 -11.71452 -11.30450 -11.25220 -11.12275 -10.94491 -10.63893 -10.32473 -9.86290 -9.78940 -9.61166 -9.37658 -9.14828 -9.07729 -9.00389 -8.47381 -8.13376 -5.97846 -3.94400 1.02513 1.17459 3.31700 3.34547 3.41753 3.45943 3.88190 4.41602 4.50755 4.56143 4.58818 4.77142 4.87686 4.97915 5.04987 5.14787 5.22280 5.30356 5.31501 5.35903 5.41574 5.62213 5.72067 5.72702 5.79727 5.80739 5.85605 6.03779 6.20364 6.23295 6.27170 6.35440 6.45226 6.54669 6.74232 6.84291 7.00357 7.04665 7.12894 7.31576 7.36375 7.55899 7.72793 7.87629 8.62347 9.08233 9.65271 11.15707 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.002898 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.012215 B = 9660.034226 C =10414.264999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.061 3.939 14 N -0.688 5.688 15 C 0.060 3.940 16 C 0.063 3.937 17 O -0.381 6.381 18 C 0.105 3.895 19 C -0.090 4.090 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.100 4.100 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.348 0.652 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 0.017 26.782 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.068 4.068 14 N -0.321 5.321 15 C -0.069 4.069 16 C -0.014 4.014 17 O -0.300 6.300 18 C 0.028 3.972 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.119 4.119 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.317 0.339 26.429 27.176 hybrid contribution 0.096 -1.516 -0.059 1.520 sum -6.222 -1.177 26.370 27.120 Atomic orbital electron populations 1.21740 0.96186 1.00520 1.00818 1.21018 0.95288 1.00105 0.92976 0.91106 1.19608 0.95547 0.96052 0.93459 1.21149 1.35175 1.09501 0.89108 0.90813 1.25030 0.95751 0.96898 0.95963 1.69919 1.47324 1.39374 0.97956 0.86801 0.80633 0.84553 0.77413 1.20392 1.19103 1.21531 1.22162 1.00084 0.94570 0.89964 1.60573 1.20758 1.49806 1.01006 1.21946 1.00236 0.95428 0.89316 1.22632 0.80857 1.00545 0.97369 1.87958 1.21130 1.73309 1.47650 1.21260 0.90254 0.96100 0.89554 1.19628 0.94275 0.96116 0.98993 1.21128 0.94058 0.98683 0.97569 1.21193 0.94539 0.98816 0.99516 1.21212 0.99970 0.94877 0.97336 1.21141 0.93985 0.99150 1.00085 1.21053 0.94602 0.97220 0.98980 0.91411 0.94134 0.94586 0.96815 0.97151 0.92873 0.95899 0.91637 0.83236 0.94870 0.89864 0.93207 0.92195 0.92735 0.92348 0.85699 0.85789 0.86041 0.86009 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.77 37.16 0.33 -2.31 16 2 C -0.08 -1.54 2.55 -90.62 -0.23 -1.77 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 4 C -0.01 -0.21 3.51 -27.88 -0.10 -0.31 16 5 C -0.51 -14.73 8.96 -34.44 -0.31 -15.03 16 6 H 0.07 2.28 7.30 -52.49 -0.38 1.89 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 9 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.69 -10.46 6.50 -113.78 -0.74 -11.20 16 15 C 0.06 0.74 6.11 -3.83 -0.02 0.72 16 16 C 0.06 0.66 6.28 37.16 0.23 0.89 16 17 O -0.38 -4.56 9.85 -35.23 -0.35 -4.91 16 18 C 0.10 0.99 6.06 36.01 0.22 1.21 16 19 C -0.09 -0.92 5.51 -104.62 -0.58 -1.49 16 20 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.08 10.05 -39.59 -0.40 -1.48 16 24 C -0.10 -0.94 9.70 -39.59 -0.38 -1.33 16 25 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.61 6.68 -51.92 -0.35 0.26 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.35 5.45 6.54 -39.30 -0.26 5.19 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -31.93 358.57 -9.73 -41.66 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.62 Total: 1.49 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.54 Total: -22.32 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.03 Total: -38.82 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.35 Total: -4.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.93 -9.73 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602566362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.135 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds