Wall clock time and date at job start Mon Mar 30 2020 01:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.46805 * 240.00355 * 2 1 3 5 5 C 1.50702 * 109.47522 * 65.00079 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53001 * 109.47328 * 120.00328 * 2 1 3 14 14 N 1.46898 * 109.47205 * 294.99944 * 13 2 1 15 15 C 1.46898 * 111.00204 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47314 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47469 * 64.99162 * 16 15 14 18 18 C 1.42893 * 113.99816 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.46823 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00070 * 269.72560 * 19 18 17 21 21 C 1.38238 * 120.00048 * 179.76604 * 20 19 18 22 22 C 1.38239 * 119.99780 * 0.50747 * 21 20 19 23 23 C 1.38230 * 119.99742 * 359.75047 * 22 21 20 24 24 C 1.38227 * 120.00386 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47607 * 59.99437 * 1 2 3 26 26 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46596 * 299.99619 * 1 2 3 28 28 H 1.09000 * 109.47527 * 304.99678 * 4 2 1 29 29 H 1.09001 * 109.47054 * 184.99768 * 4 2 1 30 30 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 31 31 H 1.08995 * 109.46978 * 54.99904 * 13 2 1 32 32 H 1.08999 * 109.47150 * 174.99508 * 13 2 1 33 33 H 1.00893 * 111.00163 * 56.04269 * 14 13 2 34 34 H 1.08999 * 109.46334 * 299.99582 * 15 14 13 35 35 H 1.09000 * 109.47222 * 59.99443 * 15 14 13 36 36 H 1.08997 * 109.47112 * 184.99868 * 16 15 14 37 37 H 1.09004 * 109.46581 * 304.99593 * 16 15 14 38 38 H 1.09001 * 109.47582 * 299.99886 * 18 17 16 39 39 H 1.08998 * 109.47659 * 60.00659 * 18 17 16 40 40 H 1.08003 * 120.00049 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.00405 * 180.22672 * 21 20 19 42 42 H 1.08001 * 119.99978 * 179.71967 * 22 21 20 43 43 H 1.08011 * 119.99608 * 179.97438 * 23 22 21 44 44 H 1.08007 * 119.99945 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 1.6396 0.2743 -4.7997 9 14 2.9625 -1.9888 -3.9030 10 1 4.4159 -1.6845 -3.8861 11 1 2.6337 -2.8968 -2.7749 12 1 2.6093 -2.6463 -5.1868 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7025 0.1906 4.8892 17 8 0.2771 0.1937 4.9898 18 6 -0.2253 0.9341 6.1039 19 6 -1.7310 0.8694 6.1121 20 6 -2.4677 1.8296 5.4441 21 6 -3.8487 1.7675 5.4476 22 6 -4.4931 0.7511 6.1279 23 6 -3.7565 -0.2059 6.8003 24 6 -2.3755 -0.1471 6.7920 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6054 -1.7198 -1.2953 29 1 3.1262 -0.7994 -1.2057 30 1 1.8831 -0.0508 -5.6805 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7996 1.2055 33 1 0.6530 0.1792 2.4753 34 1 1.6922 -1.6247 3.7299 35 1 3.2128 -0.7039 3.6399 36 1 2.1293 -0.2531 5.7887 37 1 2.0615 1.2144 4.7836 38 1 0.1614 0.5062 7.0288 39 1 0.0935 1.9733 6.0232 40 1 -1.9643 2.6264 4.9167 41 1 -4.4243 2.5155 4.9227 42 1 -5.5721 0.7052 6.1344 43 1 -4.2600 -0.9998 7.3321 44 1 -1.7999 -0.8947 7.3177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602566362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:24 Heat of formation + Delta-G solvation = -58.893827 kcal Electronic energy + Delta-G solvation = -20616.114726 eV Core-core repulsion = 17531.775651 eV Total energy + Delta-G solvation = -3084.339075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28879 -39.04138 -38.06809 -35.61518 -34.09377 -32.80081 -31.78920 -30.33109 -28.92490 -26.90091 -26.39774 -23.92132 -23.48062 -22.70322 -22.21464 -20.64653 -18.95512 -17.96660 -17.50433 -17.15294 -16.82799 -16.41084 -16.23253 -15.82152 -15.53364 -15.08648 -14.90758 -14.68090 -14.33246 -14.26115 -13.77452 -13.65870 -13.54722 -13.33104 -13.01518 -12.77739 -12.75187 -12.49290 -12.23080 -12.08893 -11.90408 -11.80598 -11.74258 -11.45289 -11.18234 -11.03497 -10.72975 -10.54991 -9.82456 -9.75833 -9.31814 -8.25629 -6.28065 0.34395 0.49796 1.36220 1.38075 1.50056 2.38359 2.61158 3.09485 3.16444 3.28221 3.88660 3.92574 4.11952 4.15131 4.18297 4.25538 4.30302 4.34748 4.40450 4.41605 4.46859 4.53701 4.65349 4.74842 4.77478 4.81098 4.85716 4.93888 5.00465 5.05806 5.08433 5.15432 5.29347 5.35555 5.53587 5.54833 5.61202 5.67026 5.69349 5.72830 6.09389 6.12000 6.27896 6.35577 6.49987 6.79420 7.35394 8.91311 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.002898 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.012215 B = 9660.034226 C =10414.264999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 H 0.053 0.947 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.247 1.247 12 H -0.286 1.286 13 C 0.073 3.927 14 N -0.693 5.693 15 C 0.059 3.941 16 C 0.066 3.934 17 O -0.404 6.404 18 C 0.104 3.896 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.112 4.112 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -1.774 28.938 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.171 1.171 12 H -0.212 1.212 13 C -0.056 4.056 14 N -0.326 5.326 15 C -0.070 4.070 16 C -0.011 4.011 17 O -0.324 6.324 18 C 0.028 3.972 19 C -0.108 4.108 20 C -0.133 4.133 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.130 4.130 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.050 0.950 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.713 -1.445 28.618 29.218 hybrid contribution -0.176 -0.860 -0.699 1.122 sum -5.889 -2.305 27.919 28.626 Atomic orbital electron populations 1.21640 0.95685 1.00744 1.00434 1.20891 0.95717 0.99102 0.93305 0.92837 1.19557 0.95920 0.95733 0.93146 1.21458 1.34346 1.08638 0.91291 0.94811 1.26017 0.97079 1.01000 0.95478 1.70077 1.49152 1.41690 0.98690 0.85667 0.79210 0.79815 0.77991 1.19174 1.17086 1.21165 1.21913 1.00249 0.94257 0.89169 1.60541 1.20554 1.50035 1.01469 1.22068 1.00983 0.95401 0.88562 1.22634 0.80492 1.00442 0.97514 1.87917 1.21857 1.73836 1.48834 1.21363 0.89923 0.96338 0.89564 1.19842 0.94843 0.96570 0.99504 1.21311 0.94719 0.99127 0.98186 1.21462 0.94503 0.99499 0.99792 1.21539 1.01198 0.94531 0.96847 1.21474 0.93953 0.99639 0.99924 1.21309 0.95241 0.97369 0.99079 0.94552 0.93520 0.92193 0.96474 0.96444 0.92665 0.95456 0.91028 0.83646 0.95000 0.88545 0.90622 0.92242 0.90970 0.91844 0.85637 0.84493 0.83995 0.83910 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.77 71.98 0.63 -4.33 16 2 C -0.07 -2.88 2.55 -10.79 -0.03 -2.91 16 3 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.01 -0.27 3.51 29.85 0.10 -0.17 16 5 C -0.52 -30.58 8.96 25.60 0.23 -30.35 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 7 C 0.00 0.01 5.47 84.65 0.46 0.47 16 8 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 9 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.07 2.38 5.14 86.30 0.44 2.82 16 14 N -0.69 -19.78 6.50 -513.90 -3.34 -23.12 16 15 C 0.06 1.30 6.11 86.30 0.53 1.83 16 16 C 0.07 1.22 6.28 71.98 0.45 1.67 16 17 O -0.40 -9.00 9.85 -148.98 -1.47 -10.46 16 18 C 0.10 1.82 6.06 71.24 0.43 2.25 16 19 C -0.11 -2.10 5.51 -19.86 -0.11 -2.20 16 20 C -0.12 -2.27 9.70 22.27 0.22 -2.05 16 21 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 22 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.11 -1.95 9.70 22.27 0.22 -1.74 16 25 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.01 6.68 -2.38 -0.02 2.00 16 28 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 29 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 30 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.34 10.24 6.54 -89.70 -0.59 9.65 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 39 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.14 1.52 8.06 -2.90 -0.02 1.50 16 44 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -69.46 358.57 1.93 -67.53 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.31 Total: 20.30 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 4.25 Total: -40.41 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.04 Total: -84.13 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.47 Total: -10.46 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -69.46 1.93 -67.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602566362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.634 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds