Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 C 1.53003 * 109.47423 * 240.00090 * 2 1 3 5 5 C 1.50703 * 109.47125 * 64.99909 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00396 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99663 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47262 * 90.00249 * 9 7 5 11 11 H 1.48504 * 109.47280 * 210.00385 * 9 7 5 12 12 H 1.48502 * 109.47344 * 330.00154 * 9 7 5 13 13 C 1.52997 * 109.47079 * 120.00334 * 2 1 3 14 14 N 1.46900 * 109.47220 * 294.99805 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00099 * 269.72808 * 17 16 15 19 19 C 1.38239 * 119.99655 * 179.76882 * 18 17 16 20 20 C 1.38230 * 120.00228 * 0.50243 * 19 18 17 21 21 C 1.50695 * 120.00174 * 179.72734 * 20 19 18 22 22 O 1.42898 * 109.47221 * 270.02507 * 21 20 19 23 23 C 1.38238 * 119.99995 * 359.75228 * 20 19 18 24 24 C 1.38238 * 120.00072 * 359.97438 * 23 20 19 25 25 H 1.09007 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00027 * 1 2 3 27 27 H 1.09000 * 109.47033 * 59.99907 * 1 2 3 28 28 H 1.08998 * 109.47666 * 185.00015 * 4 2 1 29 29 H 1.09001 * 109.46990 * 305.00497 * 4 2 1 30 30 H 0.96999 * 119.99995 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46989 * 175.00023 * 13 2 1 32 32 H 1.09005 * 109.47424 * 54.99799 * 13 2 1 33 33 H 1.00905 * 110.99607 * 303.95664 * 14 13 2 34 34 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 35 35 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 36 36 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 37 37 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 38 38 H 1.08003 * 119.99927 * 359.97438 * 18 17 16 39 39 H 1.08000 * 119.99431 * 180.23215 * 19 18 17 40 40 H 1.09001 * 109.47176 * 30.01922 * 21 20 19 41 41 H 1.09001 * 109.47298 * 150.02075 * 21 20 19 42 42 H 0.96703 * 114.00441 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.99952 * 179.97438 * 23 20 19 44 44 H 1.07991 * 120.00062 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 1.6449 0.2773 -4.7994 9 14 2.9628 -1.9887 -3.9029 10 1 2.0237 -3.1332 -4.0190 11 1 3.8110 -1.9189 -5.1198 12 1 3.8253 -2.1754 -2.7085 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7023 0.1908 4.8892 17 6 2.1884 -0.4907 6.1423 18 6 1.3863 -1.4185 6.7801 19 6 1.8342 -2.0471 7.9270 20 6 3.0799 -1.7403 8.4418 21 6 3.5656 -2.4210 9.6954 22 8 3.1698 -1.6570 10.8362 23 6 3.8798 -0.8086 7.8069 24 6 3.4343 -0.1841 6.6569 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.8916 -0.0460 -5.6801 31 1 3.1262 -0.7995 1.2055 32 1 1.6053 -1.7199 1.2951 33 1 1.9881 0.9872 2.3966 34 1 3.2126 -0.7038 3.6400 35 1 1.6920 -1.6246 3.7299 36 1 0.6153 0.2676 4.9161 37 1 2.1356 1.1890 4.8265 38 1 0.4111 -1.6546 6.3806 39 1 1.2091 -2.7747 8.4231 40 1 3.1320 -3.4190 9.7582 41 1 4.6526 -2.4982 9.6691 42 1 3.4497 -2.0368 11.6804 43 1 4.8529 -0.5686 8.2093 44 1 4.0590 0.5440 6.1612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602580841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -51.179640 kcal Electronic energy + Delta-G solvation = -20201.079397 eV Core-core repulsion = 17117.074835 eV Total energy + Delta-G solvation = -3084.004563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84817 -37.43010 -36.86885 -34.79258 -32.92364 -31.81330 -31.18379 -29.30038 -27.37763 -25.97628 -24.48792 -22.99428 -22.51156 -21.78712 -20.79534 -19.05165 -17.87840 -16.78694 -16.53461 -16.21324 -15.56113 -15.41929 -14.62849 -14.41723 -14.24523 -14.01362 -13.76617 -13.61832 -13.40384 -13.13064 -12.79301 -12.39196 -12.17329 -11.93230 -11.63209 -11.51278 -11.46418 -11.14452 -11.03069 -10.94302 -10.68188 -10.51918 -10.42522 -9.77401 -9.72157 -9.40778 -9.15339 -9.04768 -8.85077 -8.50061 -8.19487 -6.00301 -3.97070 0.99043 1.17463 3.32564 3.37101 3.39812 3.43458 4.06161 4.29200 4.47253 4.48270 4.61872 4.77390 4.78484 4.90451 4.97491 5.07605 5.20221 5.25554 5.33316 5.39626 5.50299 5.60710 5.68842 5.76389 5.80580 5.93313 6.00466 6.05657 6.15238 6.30001 6.32552 6.43757 6.44466 6.61279 6.74533 6.86342 7.05729 7.15577 7.16990 7.25740 7.33563 7.48373 7.60844 7.84753 8.59440 9.05577 9.62644 11.13109 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.002322 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.457774 B =12058.126705 C =12366.497984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.688 5.688 15 C 0.065 3.935 16 C -0.081 4.081 17 C -0.068 4.068 18 C -0.118 4.118 19 C -0.097 4.097 20 C -0.104 4.104 21 C 0.118 3.882 22 O -0.568 6.568 23 C -0.098 4.098 24 C -0.120 4.120 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.338 0.662 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.379 0.621 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -4.971 29.707 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.067 4.067 14 N -0.319 5.319 15 C -0.064 4.064 16 C -0.119 4.119 17 C -0.069 4.069 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.041 3.959 22 O -0.374 6.374 23 C -0.116 4.116 24 C -0.138 4.138 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.226 0.774 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.964 -4.883 29.069 29.625 hybrid contribution 1.794 -1.098 0.095 2.106 sum 4.759 -5.981 29.165 30.149 Atomic orbital electron populations 1.21600 0.95255 1.00631 1.00707 1.21012 0.96382 0.99025 0.92890 0.92197 1.19619 0.95694 0.95909 0.93524 1.21138 1.35215 1.09562 0.89086 0.90808 1.25036 0.95705 0.96957 0.95977 1.69914 1.47270 1.39289 0.97978 0.86800 0.80642 0.84388 0.77552 1.20365 1.21508 1.19165 1.22174 0.97074 0.97773 0.89663 1.60511 1.64069 1.05834 1.01443 1.21886 0.97201 0.98210 0.89132 1.20622 1.02271 0.98404 0.90586 1.19968 0.94171 0.96395 0.96327 1.21096 1.00071 0.96754 0.95665 1.21020 0.94959 0.99576 0.96002 1.19571 0.95500 0.99163 0.96182 1.20973 0.97992 0.93111 0.83866 1.86583 1.81439 1.53055 1.16322 1.21008 0.99615 0.95556 0.95414 1.21073 0.95920 1.00461 0.96370 0.94248 0.93658 0.92244 0.96974 0.97055 0.92852 0.95845 0.91582 0.84424 0.95537 0.91142 0.89884 0.90980 0.85631 0.86082 0.92795 0.92823 0.77397 0.86135 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.15 0.33 -2.07 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.69 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.02 5.07 -3.83 -0.02 1.00 16 14 N -0.69 -9.51 5.96 -113.78 -0.68 -10.18 16 15 C 0.07 0.77 5.67 -3.83 -0.02 0.74 16 16 C -0.08 -0.81 5.61 -27.88 -0.16 -0.97 16 17 C -0.07 -0.69 5.13 -104.62 -0.54 -1.23 16 18 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 19 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 20 C -0.10 -0.98 5.51 -104.63 -0.58 -1.55 16 21 C 0.12 0.82 7.17 36.00 0.26 1.08 16 22 O -0.57 -4.38 13.64 -35.23 -0.48 -4.86 16 23 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 24 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.34 4.40 8.73 -39.29 -0.34 4.05 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 41 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 42 H 0.38 1.00 9.12 45.56 0.42 1.41 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -32.75 360.42 -9.53 -42.28 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.92 Total: 1.19 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.99 Total: -23.84 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.10 Total: -37.54 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.48 Total: -4.86 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.75 -9.53 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602580841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.900 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds