Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 C 1.53003 * 109.47423 * 240.00090 * 2 1 3 5 5 C 1.50703 * 109.47125 * 64.99909 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00396 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99663 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47262 * 90.00249 * 9 7 5 11 11 H 1.48504 * 109.47280 * 210.00385 * 9 7 5 12 12 H 1.48502 * 109.47344 * 330.00154 * 9 7 5 13 13 C 1.52997 * 109.47079 * 120.00334 * 2 1 3 14 14 N 1.46900 * 109.47220 * 294.99805 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.38233 * 120.00099 * 269.72808 * 17 16 15 19 19 C 1.38239 * 119.99655 * 179.76882 * 18 17 16 20 20 C 1.38230 * 120.00228 * 0.50243 * 19 18 17 21 21 C 1.50695 * 120.00174 * 179.72734 * 20 19 18 22 22 O 1.42898 * 109.47221 * 270.02507 * 21 20 19 23 23 C 1.38238 * 119.99995 * 359.75228 * 20 19 18 24 24 C 1.38238 * 120.00072 * 359.97438 * 23 20 19 25 25 H 1.09007 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00027 * 1 2 3 27 27 H 1.09000 * 109.47033 * 59.99907 * 1 2 3 28 28 H 1.08998 * 109.47666 * 185.00015 * 4 2 1 29 29 H 1.09001 * 109.46990 * 305.00497 * 4 2 1 30 30 H 0.96999 * 119.99995 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46989 * 175.00023 * 13 2 1 32 32 H 1.09005 * 109.47424 * 54.99799 * 13 2 1 33 33 H 1.00905 * 110.99607 * 303.95664 * 14 13 2 34 34 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 35 35 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 36 36 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 37 37 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 38 38 H 1.08003 * 119.99927 * 359.97438 * 18 17 16 39 39 H 1.08000 * 119.99431 * 180.23215 * 19 18 17 40 40 H 1.09001 * 109.47176 * 30.01922 * 21 20 19 41 41 H 1.09001 * 109.47298 * 150.02075 * 21 20 19 42 42 H 0.96703 * 114.00441 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.99952 * 179.97438 * 23 20 19 44 44 H 1.07991 * 120.00062 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 1.6449 0.2773 -4.7994 9 14 2.9628 -1.9887 -3.9029 10 1 2.0237 -3.1332 -4.0190 11 1 3.8110 -1.9189 -5.1198 12 1 3.8253 -2.1754 -2.7085 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7023 0.1908 4.8892 17 6 2.1884 -0.4907 6.1423 18 6 1.3863 -1.4185 6.7801 19 6 1.8342 -2.0471 7.9270 20 6 3.0799 -1.7403 8.4418 21 6 3.5656 -2.4210 9.6954 22 8 3.1698 -1.6570 10.8362 23 6 3.8798 -0.8086 7.8069 24 6 3.4343 -0.1841 6.6569 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 1.8916 -0.0460 -5.6801 31 1 3.1262 -0.7995 1.2055 32 1 1.6053 -1.7199 1.2951 33 1 1.9881 0.9872 2.3966 34 1 3.2126 -0.7038 3.6400 35 1 1.6920 -1.6246 3.7299 36 1 0.6153 0.2676 4.9161 37 1 2.1356 1.1890 4.8265 38 1 0.4111 -1.6546 6.3806 39 1 1.2091 -2.7747 8.4231 40 1 3.1320 -3.4190 9.7582 41 1 4.6526 -2.4982 9.6691 42 1 3.4497 -2.0368 11.6804 43 1 4.8529 -0.5686 8.2093 44 1 4.0590 0.5440 6.1612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602580841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = -73.162318 kcal Electronic energy + Delta-G solvation = -20202.032638 eV Core-core repulsion = 17117.074835 eV Total energy + Delta-G solvation = -3084.957803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51924 -38.53795 -37.64640 -36.09810 -34.48146 -33.28651 -31.85818 -30.34526 -29.11562 -27.03450 -25.68694 -23.89851 -23.67215 -23.02486 -21.54561 -20.66770 -18.91978 -18.36938 -17.25547 -17.02045 -16.53544 -16.38257 -16.14383 -15.69121 -15.43387 -15.02379 -14.80989 -14.60766 -14.35290 -14.26302 -14.08288 -13.72122 -13.44166 -13.22682 -12.89126 -12.77367 -12.66630 -12.43517 -12.29903 -12.11868 -11.84901 -11.75021 -11.70253 -11.44412 -11.16715 -11.02770 -10.98641 -10.73707 -9.84652 -9.57937 -9.31446 -8.25852 -6.28123 0.29806 0.48120 1.35854 1.37227 1.49028 2.37642 2.69860 3.09109 3.23481 3.60598 3.85035 4.02388 4.05398 4.11924 4.15665 4.20404 4.29489 4.34897 4.43609 4.50197 4.51889 4.59545 4.66841 4.74604 4.85489 4.90028 4.94745 4.99481 5.04628 5.10582 5.18301 5.22269 5.40249 5.42523 5.46327 5.55884 5.63760 5.70834 5.71868 5.73397 6.07133 6.09878 6.35170 6.51267 6.79491 6.89602 7.35250 8.90805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.002322 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.457774 B =12058.126705 C =12366.497984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 H 0.051 0.949 4 C -0.008 4.008 5 C -0.518 4.518 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.075 3.925 14 N -0.689 5.689 15 C 0.071 3.929 16 C -0.071 4.071 17 C -0.081 4.081 18 C -0.128 4.128 19 C -0.108 4.108 20 C -0.117 4.117 21 C 0.117 3.883 22 O -0.591 6.591 23 C -0.109 4.109 24 C -0.130 4.130 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.344 0.656 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.399 0.601 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -6.603 31.878 32.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.054 4.054 14 N -0.320 5.320 15 C -0.058 4.058 16 C -0.109 4.109 17 C -0.081 4.081 18 C -0.146 4.146 19 C -0.126 4.126 20 C -0.117 4.117 21 C 0.040 3.960 22 O -0.400 6.400 23 C -0.127 4.127 24 C -0.148 4.148 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.250 0.750 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.016 -6.516 31.284 32.207 hybrid contribution 1.419 -0.508 -0.518 1.594 sum 5.436 -7.024 30.766 32.022 Atomic orbital electron populations 1.21503 0.95006 1.00675 1.00161 1.20895 0.96535 0.98516 0.93012 0.93045 1.19577 0.95846 0.95759 0.93359 1.21456 1.34269 1.08690 0.91223 0.94669 1.26018 0.97078 1.01008 0.95568 1.70072 1.49119 1.41585 0.98681 0.85682 0.79339 0.79539 0.78208 1.19321 1.21151 1.17133 1.21893 0.96988 0.97504 0.89031 1.60444 1.64286 1.06070 1.01229 1.21866 0.97172 0.98145 0.88668 1.20501 1.02151 0.98403 0.89815 1.20022 0.94601 0.96939 0.96582 1.21294 1.00514 0.96829 0.95990 1.21279 0.95393 0.99921 0.96034 1.19972 0.95495 0.99062 0.97141 1.21031 0.98911 0.93239 0.82798 1.86516 1.81902 1.53987 1.17632 1.21273 1.00387 0.95606 0.95421 1.21281 0.96024 1.00783 0.96698 0.93851 0.91466 0.95428 0.96644 0.96559 0.92693 0.95607 0.91332 0.83792 0.95415 0.91459 0.90026 0.90315 0.84868 0.84698 0.91347 0.91373 0.75048 0.84740 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.89 71.98 0.64 -3.78 16 2 C -0.07 -2.74 2.48 -10.80 -0.03 -2.76 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 5 C -0.52 -30.09 8.96 25.60 0.23 -29.86 16 6 H 0.04 2.25 7.30 -2.91 -0.02 2.23 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 8 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 9 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 13 C 0.07 2.31 5.07 86.30 0.44 2.75 16 14 N -0.69 -17.59 5.96 -513.90 -3.06 -20.65 16 15 C 0.07 1.51 5.67 86.30 0.49 2.00 16 16 C -0.07 -1.30 5.61 29.85 0.17 -1.13 16 17 C -0.08 -1.53 5.13 -19.86 -0.10 -1.63 16 18 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 19 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 20 C -0.12 -2.01 5.51 -19.87 -0.11 -2.12 16 21 C 0.12 1.39 7.17 71.23 0.51 1.90 16 22 O -0.59 -8.02 13.64 -148.98 -2.03 -10.05 16 23 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 24 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 25 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 27 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 28 H 0.02 0.71 7.20 -2.39 -0.02 0.69 16 29 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 30 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.34 8.25 8.73 -89.69 -0.78 7.47 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.08 1.32 8.09 -2.39 -0.02 1.31 16 38 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 41 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 42 H 0.40 1.33 9.12 -74.05 -0.68 0.65 16 43 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.13 2.02 8.06 -2.92 -0.02 2.00 16 Total: -1.00 -70.58 360.42 0.22 -70.36 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.54 Total: 15.92 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.67 Total: -42.06 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.76 Total: -81.02 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -2.03 Total: -10.05 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -70.58 0.22 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602580841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.800 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds