Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00103 * 2 1 4 4 N 1.46900 * 109.47491 * 124.21208 * 3 2 1 5 5 C 1.46896 * 111.00065 * 192.36278 * 4 3 2 6 6 C 1.52994 * 109.47250 * 66.04755 * 5 4 3 7 7 C 1.50701 * 109.47478 * 179.97438 * 6 5 4 8 8 C 1.34515 * 125.78929 * 89.71094 * 7 6 5 9 9 C 1.41380 * 106.84094 * 179.89729 * 8 7 6 10 10 C 1.34518 * 106.84039 * 0.37268 * 9 8 7 11 11 O 1.34301 * 108.42025 * 359.76946 * 10 9 8 12 12 C 1.46897 * 110.99757 * 68.40687 * 4 3 2 13 13 C 1.53000 * 109.47259 * 199.51591 * 12 4 3 14 14 H 1.09003 * 109.46780 * 306.19091 * 13 12 4 15 15 C 1.52997 * 109.47633 * 66.19316 * 13 12 4 16 16 C 1.52999 * 109.47174 * 186.20151 * 13 12 4 17 17 C 1.50705 * 109.47276 * 174.99778 * 16 13 12 18 18 H 1.08005 * 119.99493 * 359.97438 * 17 16 13 19 19 C 1.37871 * 120.00162 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99872 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00243 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47036 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47319 * 119.99786 * 21 19 17 24 24 H 1.48500 * 109.47217 * 239.99987 * 21 19 17 25 25 H 1.08001 * 120.00442 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00143 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00442 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.46693 * 4.21457 * 3 2 1 29 29 H 1.08997 * 109.47213 * 244.21840 * 3 2 1 30 30 H 1.08994 * 109.47126 * 306.04646 * 5 4 3 31 31 H 1.09004 * 109.47001 * 186.04455 * 5 4 3 32 32 H 1.09001 * 109.47572 * 299.99968 * 6 5 4 33 33 H 1.09004 * 109.47139 * 59.99890 * 6 5 4 34 34 H 1.07997 * 126.57947 * 0.03320 * 8 7 6 35 35 H 1.07998 * 126.57889 * 180.16945 * 9 8 7 36 36 H 1.08004 * 125.78842 * 179.75502 * 10 9 8 37 37 H 1.09003 * 109.47608 * 319.51465 * 12 4 3 38 38 H 1.08997 * 109.47487 * 79.51243 * 12 4 3 39 39 H 1.09005 * 109.46829 * 65.04291 * 15 13 12 40 40 H 1.08998 * 109.47468 * 185.04255 * 15 13 12 41 41 H 1.08997 * 109.46709 * 305.04460 * 15 13 12 42 42 H 1.09004 * 109.46590 * 294.99172 * 16 13 12 43 43 H 1.08997 * 109.47544 * 54.99593 * 16 13 12 44 44 H 0.97001 * 119.99953 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9827 1.3399 1.1453 5 6 3.5159 2.6930 1.3515 6 6 2.3807 3.6306 1.7674 7 6 2.9278 5.0187 1.9796 8 6 3.0284 5.9766 1.0406 9 6 3.5894 7.1109 1.6711 10 6 3.8057 6.7756 2.9557 11 8 3.4030 5.5072 3.1368 12 6 4.0694 0.3657 0.9779 13 6 4.7065 0.0735 2.3379 14 1 5.0087 1.0102 2.8062 15 6 3.6922 -0.6405 3.2335 16 6 5.9339 -0.8193 2.1448 17 6 6.6319 -1.0066 3.4673 18 1 6.2395 -0.5355 4.3564 19 6 7.7714 -1.7792 3.5421 20 7 8.2488 -2.3532 2.4594 21 14 8.6370 -2.0107 5.1811 22 1 7.9052 -1.2657 6.2369 23 1 8.6680 -3.4550 5.5248 24 1 10.0261 -1.4948 5.0845 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3575 2.1322 0.0755 29 1 2.6322 1.3963 -0.9253 30 1 3.9629 3.0525 0.4247 31 1 4.2733 2.6696 2.1351 32 1 1.6233 3.6541 0.9839 33 1 1.9337 3.2711 2.6943 34 1 2.7348 5.8955 0.0044 35 1 3.8061 8.0627 1.2091 36 1 4.2312 7.4175 3.7129 37 1 3.6686 -0.5573 0.5586 38 1 4.8226 0.7737 0.3039 39 1 3.4576 -1.6172 2.8099 40 1 4.1143 -0.7687 4.2302 41 1 2.7819 -0.0445 3.2984 42 1 5.6204 -1.7894 1.7589 43 1 6.6169 -0.3500 1.4368 44 1 9.0507 -2.8965 2.5120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602592721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = 22.111040 kcal Electronic energy + Delta-G solvation = -21403.576494 eV Core-core repulsion = 18322.750054 eV Total energy + Delta-G solvation = -3080.826440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.59245 -38.42206 -34.91596 -33.98323 -32.99865 -32.37152 -31.31162 -27.94756 -26.99142 -26.20786 -24.60275 -23.00452 -21.79971 -21.33866 -20.36943 -19.66935 -18.76325 -17.41197 -16.32074 -16.11617 -15.71588 -15.17869 -14.90344 -14.71212 -14.41353 -13.73804 -13.51629 -13.10057 -12.90401 -12.88568 -12.69825 -12.41886 -12.23151 -12.01487 -11.78836 -11.46276 -11.28374 -10.91844 -10.82129 -10.72166 -10.66659 -10.25149 -10.20334 -9.97601 -9.56885 -9.41930 -9.07785 -8.92016 -8.49650 -8.30127 -8.03271 -5.94953 -3.95573 1.68346 2.32166 2.54859 2.95829 3.34022 3.41592 3.46135 4.16552 4.50941 4.74263 4.83963 4.92566 4.95820 5.10944 5.16236 5.28524 5.41119 5.45045 5.49627 5.54857 5.71633 5.73748 5.78301 5.89688 5.94644 5.99938 6.06025 6.14092 6.21240 6.40836 6.45198 6.57829 6.68092 6.75409 6.80729 7.04316 7.10431 7.17265 7.24069 7.36618 7.43027 7.73011 7.89032 8.05742 8.50426 9.11149 9.67854 11.16691 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.004474 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.601344 B = 6256.817219 C = 8016.744527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C 0.074 3.926 4 N -0.530 5.530 5 C 0.058 3.942 6 C -0.038 4.038 7 C 0.001 3.999 8 C -0.217 4.217 9 C -0.216 4.216 10 C -0.045 4.045 11 O -0.172 6.172 12 C 0.058 3.942 13 C -0.078 4.078 14 H 0.055 0.945 15 C -0.121 4.121 16 C 0.026 3.974 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.201 0.799 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 14.403 -4.686 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.153 4.153 3 C -0.054 4.054 4 N -0.253 5.253 5 C -0.070 4.070 6 C -0.076 4.076 7 C -0.050 4.050 8 C -0.236 4.236 9 C -0.235 4.235 10 C -0.113 4.113 11 O -0.068 6.068 12 C -0.068 4.068 13 C -0.097 4.097 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.011 4.011 17 C -0.548 4.548 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.123 13.994 -4.060 20.292 hybrid contribution 1.190 0.254 -0.075 1.220 sum -12.932 14.248 -4.136 19.681 Atomic orbital electron populations 1.23714 0.95756 1.01468 1.02364 1.22897 0.95818 0.98391 0.98151 1.21315 0.95612 0.95991 0.92447 1.62070 1.18647 1.05128 1.39478 1.22109 0.96140 0.87813 1.00939 1.20181 0.97820 0.85890 1.03696 1.22486 1.01854 0.97065 0.83615 1.21565 1.07830 0.93718 1.00509 1.21806 1.06453 1.00612 0.94620 1.24019 1.04476 0.84011 0.98801 1.84061 1.61714 1.26196 1.34837 1.22382 0.90938 0.94431 0.99080 1.21185 0.96493 0.99432 0.92620 0.92685 1.21564 0.97724 0.98838 0.99732 1.19144 0.90886 0.94118 0.96958 1.21279 1.09277 1.29593 0.94645 0.92534 1.25011 0.97364 0.95957 0.96217 1.69978 1.22817 1.33359 1.27620 0.86593 0.79525 0.77804 0.84444 1.19731 1.21097 1.21152 0.88933 0.88633 0.87161 0.90630 0.94198 0.94659 0.89476 0.89148 0.89066 0.83752 0.83683 0.78277 0.91052 0.95040 0.94307 0.93088 0.93725 0.96642 0.97029 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 29.02 0.42 -1.61 16 2 C -0.13 -1.60 9.20 -36.02 -0.33 -1.94 16 3 C 0.07 0.88 5.28 -4.98 -0.03 0.85 16 4 N -0.53 -7.55 3.83 -236.08 -0.91 -8.45 16 5 C 0.06 0.78 4.77 -3.83 -0.02 0.76 16 6 C -0.04 -0.44 5.70 -27.89 -0.16 -0.60 16 7 C 0.00 0.01 6.58 -35.62 -0.23 -0.23 16 8 C -0.22 -2.46 10.81 -39.70 -0.43 -2.89 16 9 C -0.22 -2.26 10.91 -39.70 -0.43 -2.69 16 10 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 11 O -0.17 -2.29 10.65 5.71 0.06 -2.23 16 12 C 0.06 1.00 4.22 -3.83 -0.02 0.99 16 13 C -0.08 -1.61 2.39 -90.62 -0.22 -1.83 16 14 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 15 C -0.12 -2.38 8.87 37.16 0.33 -2.05 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 17 C -0.51 -14.41 8.47 -34.44 -0.29 -14.70 16 18 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H 0.09 0.84 7.84 -52.49 -0.41 0.43 16 26 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 27 H 0.11 1.42 6.87 -52.49 -0.36 1.06 16 28 H 0.08 0.77 5.67 -51.92 -0.29 0.48 16 29 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.09 1.36 6.54 -51.93 -0.34 1.02 16 32 H 0.09 0.86 6.33 -51.93 -0.33 0.53 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.20 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 38 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.07 7.10 -51.93 -0.37 0.70 16 41 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -31.03 357.46 -8.34 -39.37 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.32 Total: -0.53 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -1.28 Total: -24.00 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.17 Total: -34.91 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: 0.06 Total: -2.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.03 -8.34 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602592721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.480 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds