Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 O 1.42898 * 109.47127 * 119.99902 * 2 1 3 5 5 C 1.42904 * 114.00053 * 88.72597 * 4 2 1 6 6 H 1.08994 * 109.47134 * 327.87268 * 5 4 2 7 7 C 1.53001 * 109.46967 * 207.87718 * 5 4 2 8 8 N 1.46895 * 109.47462 * 64.52747 * 7 5 4 9 9 C 1.46904 * 111.00080 * 181.65040 * 8 7 5 10 10 H 1.09004 * 109.46864 * 324.99735 * 9 8 7 11 11 C 1.52998 * 109.47014 * 84.99891 * 9 8 7 12 12 C 1.50700 * 109.47143 * 205.00090 * 9 8 7 13 13 H 1.08004 * 119.99887 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00112 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00048 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47007 * 90.00174 * 16 14 12 18 18 H 1.48500 * 109.46773 * 210.00202 * 16 14 12 19 19 H 1.48500 * 109.47298 * 329.99782 * 16 14 12 20 20 C 1.50690 * 109.46794 * 87.87713 * 5 4 2 21 21 C 1.38239 * 120.00569 * 39.72593 * 20 5 4 22 22 C 1.38231 * 120.00068 * 179.78601 * 21 20 5 23 23 C 1.38236 * 120.00360 * 0.44465 * 22 21 20 24 24 C 1.38241 * 119.99647 * 359.81175 * 23 22 21 25 25 C 1.38234 * 120.00210 * 359.97273 * 24 23 22 26 26 H 1.08997 * 109.47222 * 184.09561 * 1 2 3 27 27 H 1.08994 * 109.47312 * 304.09656 * 1 2 3 28 28 H 1.09005 * 109.47259 * 64.10117 * 1 2 3 29 29 H 1.09002 * 109.47180 * 240.00143 * 2 1 3 30 30 H 1.08996 * 109.47196 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46701 * 300.00082 * 3 2 1 32 32 H 1.08998 * 109.46997 * 59.99238 * 3 2 1 33 33 H 1.08998 * 109.47084 * 184.53273 * 7 5 4 34 34 H 1.09006 * 109.46850 * 304.52600 * 7 5 4 35 35 H 1.00898 * 110.99997 * 305.60382 * 8 7 5 36 36 H 1.08996 * 109.47116 * 299.99766 * 11 9 8 37 37 H 1.08997 * 109.47144 * 60.00459 * 11 9 8 38 38 H 1.09007 * 109.46645 * 179.97438 * 11 9 8 39 39 H 0.96994 * 120.00106 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.99872 * 359.97438 * 21 20 5 41 41 H 1.07999 * 120.00071 * 180.27258 * 22 21 20 42 42 H 1.08000 * 120.00532 * 179.83186 * 23 22 21 43 43 H 1.08001 * 120.00056 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00141 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1727 -2.0828 0.9972 6 1 1.4275 -2.4546 0.2941 7 6 1.9955 -2.7832 2.3459 8 7 0.6161 -2.5987 2.8160 9 6 0.4193 -3.2259 4.1297 10 1 1.0168 -4.1355 4.1912 11 6 0.8542 -2.2546 5.2289 12 6 -1.0372 -3.5687 4.3096 13 1 -1.7458 -3.3427 3.5265 14 6 -1.4650 -4.1707 5.4739 15 7 -0.6022 -4.4454 6.4276 16 14 -3.2705 -4.5949 5.6971 17 1 -3.5233 -5.9667 5.1879 18 1 -3.6196 -4.5299 7.1390 19 1 -4.1039 -3.6252 4.9419 20 6 3.5529 -2.3647 0.4622 21 6 4.6366 -1.6467 0.9324 22 6 5.9033 -1.9084 0.4448 23 6 6.0852 -2.8819 -0.5196 24 6 5.0008 -3.5963 -0.9937 25 6 3.7347 -3.3377 -0.5029 26 1 -0.3633 -1.0250 0.0734 27 1 -0.3633 0.5761 0.8509 28 1 -0.3634 0.4489 -0.9245 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.2014 -3.8475 2.2324 34 1 2.6870 -2.3547 3.0714 35 1 0.3708 -1.6203 2.8421 36 1 1.9076 -2.0068 5.0988 37 1 0.2566 -1.3451 5.1674 38 1 0.7077 -2.7200 6.2037 39 1 -0.9031 -4.8693 7.2465 40 1 4.4940 -0.8833 1.6829 41 1 6.7505 -1.3505 0.8154 42 1 7.0745 -3.0846 -0.9026 43 1 5.1430 -4.3572 -1.7469 44 1 2.8876 -3.8961 -0.8730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602608214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -34.171315 kcal Electronic energy + Delta-G solvation = -21914.690848 eV Core-core repulsion = 18831.423822 eV Total energy + Delta-G solvation = -3083.267027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.68234 -37.90673 -35.84568 -33.53714 -32.07414 -31.21490 -30.80169 -28.97592 -27.13571 -26.02962 -25.05133 -22.72883 -22.42809 -21.27327 -20.47916 -20.07541 -17.04135 -16.69202 -16.28495 -15.50200 -15.03022 -14.64598 -14.57973 -14.30184 -13.98541 -13.58947 -13.36867 -13.20005 -12.69272 -12.59398 -12.46739 -12.24200 -12.13385 -11.65818 -11.54195 -11.40988 -11.16151 -11.07228 -10.96029 -10.85946 -10.70351 -10.45504 -10.34690 -10.06185 -9.85833 -9.38752 -8.95842 -8.88037 -8.66971 -8.30864 -7.15110 -5.93138 -3.96151 1.35488 1.44140 3.35903 3.41822 3.46085 3.74287 3.89892 4.47818 4.76577 4.93323 4.99344 4.99981 5.12597 5.19334 5.28262 5.38192 5.41331 5.50547 5.58526 5.63500 5.67377 5.76326 5.80644 5.89171 5.95775 6.01137 6.07701 6.21751 6.31071 6.40972 6.42938 6.50177 6.53427 6.65291 6.78622 6.94087 7.02892 7.18849 7.44095 7.51261 7.81755 7.94358 8.34249 8.63902 8.69799 9.11098 9.68935 11.13971 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.004414 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.413030 B = 6342.167058 C = 7125.630813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 C -0.147 4.147 4 O -0.367 6.367 5 C 0.132 3.868 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.682 5.682 9 C 0.211 3.789 10 H 0.031 0.969 11 C -0.167 4.167 12 C -0.492 4.492 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.111 4.111 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.332 0.668 36 H 0.005 0.995 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.259 0.741 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 7.201 -14.870 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.026 3.974 3 C -0.204 4.204 4 O -0.286 6.286 5 C 0.074 3.926 6 H 0.093 0.907 7 C -0.058 4.058 8 N -0.312 5.312 9 C 0.104 3.896 10 H 0.049 0.951 11 C -0.226 4.226 12 C -0.531 4.531 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.129 4.129 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.149 0.851 36 H 0.024 0.976 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.192 6.670 -14.857 19.212 hybrid contribution -0.408 0.173 0.598 0.744 sum 9.784 6.843 -14.259 18.598 Atomic orbital electron populations 1.22314 0.95758 1.03349 1.01906 1.22020 0.93738 0.93334 0.88318 1.21838 1.01407 0.94968 1.02223 1.87965 1.85991 1.19235 1.35431 1.21156 0.91189 0.81699 0.98580 0.90680 1.21917 0.92627 0.98792 0.92473 1.60830 1.18911 1.19743 1.31750 1.19156 0.96661 0.92312 0.81503 0.95083 1.22400 0.95355 0.99387 1.05486 1.21157 0.93026 1.37870 1.01067 0.92011 1.24949 0.97605 0.96071 0.95948 1.69889 1.33694 1.43258 1.06954 0.86523 0.85328 0.78699 0.76963 1.20825 1.21464 1.19962 1.20550 0.96656 0.96682 0.96595 1.21030 0.91808 0.99066 0.99172 1.21152 0.97133 0.98430 0.97683 1.21121 0.98618 0.96768 0.97759 1.21087 0.92780 0.99955 1.00446 1.21085 0.97481 0.97662 0.96709 0.91505 0.91696 0.92426 0.92803 0.92386 0.91719 0.91798 0.90685 0.95439 0.85071 0.97616 0.95383 0.89421 0.93146 0.85671 0.86328 0.86462 0.86264 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.49 37.16 0.35 -1.81 16 2 C 0.08 1.05 3.11 -26.73 -0.08 0.96 16 3 C -0.15 -1.57 9.56 37.16 0.36 -1.21 16 4 O -0.37 -5.57 8.44 -35.23 -0.30 -5.86 16 5 C 0.13 2.02 2.34 -27.89 -0.07 1.96 16 6 H 0.08 1.15 7.34 -51.93 -0.38 0.76 16 7 C 0.07 1.34 5.16 -3.83 -0.02 1.32 16 8 N -0.68 -14.80 6.24 -107.95 -0.67 -15.48 16 9 C 0.21 5.43 2.57 -68.86 -0.18 5.26 16 10 H 0.03 0.88 7.82 -51.93 -0.41 0.47 16 11 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 12 C -0.49 -13.82 8.84 -34.44 -0.30 -14.13 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 15 N -0.90 -26.09 11.32 55.43 0.63 -25.46 16 16 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.10 -1.44 4.81 -104.62 -0.50 -1.95 16 21 C -0.09 -1.24 9.36 -39.58 -0.37 -1.61 16 22 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 25 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 26 H 0.07 0.92 7.79 -51.93 -0.40 0.51 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.65 7.76 -51.93 -0.40 0.25 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 34 H 0.03 0.54 7.40 -51.93 -0.38 0.15 16 35 H 0.33 7.11 7.98 -39.29 -0.31 6.80 16 36 H 0.00 0.11 7.43 -51.93 -0.39 -0.27 16 37 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 38 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.13 1.70 7.77 -52.49 -0.41 1.29 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -29.32 358.79 -9.70 -39.02 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.59 Total: 6.41 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.15 Total: -20.75 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.05 Total: -40.94 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.30 Total: -5.86 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.32 -9.70 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.851 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds