Wall clock time and date at job start Mon Mar 30 2020 01:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 O 1.42898 * 109.47127 * 119.99902 * 2 1 3 5 5 C 1.42904 * 114.00053 * 88.72597 * 4 2 1 6 6 H 1.08994 * 109.47134 * 327.87268 * 5 4 2 7 7 C 1.53001 * 109.46967 * 207.87718 * 5 4 2 8 8 N 1.46895 * 109.47462 * 64.52747 * 7 5 4 9 9 C 1.46904 * 111.00080 * 181.65040 * 8 7 5 10 10 H 1.09004 * 109.46864 * 324.99735 * 9 8 7 11 11 C 1.52998 * 109.47014 * 84.99891 * 9 8 7 12 12 C 1.50700 * 109.47143 * 205.00090 * 9 8 7 13 13 H 1.08004 * 119.99887 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00112 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00048 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47007 * 90.00174 * 16 14 12 18 18 H 1.48500 * 109.46773 * 210.00202 * 16 14 12 19 19 H 1.48500 * 109.47298 * 329.99782 * 16 14 12 20 20 C 1.50690 * 109.46794 * 87.87713 * 5 4 2 21 21 C 1.38239 * 120.00569 * 39.72593 * 20 5 4 22 22 C 1.38231 * 120.00068 * 179.78601 * 21 20 5 23 23 C 1.38236 * 120.00360 * 0.44465 * 22 21 20 24 24 C 1.38241 * 119.99647 * 359.81175 * 23 22 21 25 25 C 1.38234 * 120.00210 * 359.97273 * 24 23 22 26 26 H 1.08997 * 109.47222 * 184.09561 * 1 2 3 27 27 H 1.08994 * 109.47312 * 304.09656 * 1 2 3 28 28 H 1.09005 * 109.47259 * 64.10117 * 1 2 3 29 29 H 1.09002 * 109.47180 * 240.00143 * 2 1 3 30 30 H 1.08996 * 109.47196 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46701 * 300.00082 * 3 2 1 32 32 H 1.08998 * 109.46997 * 59.99238 * 3 2 1 33 33 H 1.08998 * 109.47084 * 184.53273 * 7 5 4 34 34 H 1.09006 * 109.46850 * 304.52600 * 7 5 4 35 35 H 1.00898 * 110.99997 * 305.60382 * 8 7 5 36 36 H 1.08996 * 109.47116 * 299.99766 * 11 9 8 37 37 H 1.08997 * 109.47144 * 60.00459 * 11 9 8 38 38 H 1.09007 * 109.46645 * 179.97438 * 11 9 8 39 39 H 0.96994 * 120.00106 * 180.02562 * 15 14 12 40 40 H 1.07996 * 119.99872 * 359.97438 * 21 20 5 41 41 H 1.07999 * 120.00071 * 180.27258 * 22 21 20 42 42 H 1.08000 * 120.00532 * 179.83186 * 23 22 21 43 43 H 1.08001 * 120.00056 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00141 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1727 -2.0828 0.9972 6 1 1.4275 -2.4546 0.2941 7 6 1.9955 -2.7832 2.3459 8 7 0.6161 -2.5987 2.8160 9 6 0.4193 -3.2259 4.1297 10 1 1.0168 -4.1355 4.1912 11 6 0.8542 -2.2546 5.2289 12 6 -1.0372 -3.5687 4.3096 13 1 -1.7458 -3.3427 3.5265 14 6 -1.4650 -4.1707 5.4739 15 7 -0.6022 -4.4454 6.4276 16 14 -3.2705 -4.5949 5.6971 17 1 -3.5233 -5.9667 5.1879 18 1 -3.6196 -4.5299 7.1390 19 1 -4.1039 -3.6252 4.9419 20 6 3.5529 -2.3647 0.4622 21 6 4.6366 -1.6467 0.9324 22 6 5.9033 -1.9084 0.4448 23 6 6.0852 -2.8819 -0.5196 24 6 5.0008 -3.5963 -0.9937 25 6 3.7347 -3.3377 -0.5029 26 1 -0.3633 -1.0250 0.0734 27 1 -0.3633 0.5761 0.8509 28 1 -0.3634 0.4489 -0.9245 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.2014 -3.8475 2.2324 34 1 2.6870 -2.3547 3.0714 35 1 0.3708 -1.6203 2.8421 36 1 1.9076 -2.0068 5.0988 37 1 0.2566 -1.3451 5.1674 38 1 0.7077 -2.7200 6.2037 39 1 -0.9031 -4.8693 7.2465 40 1 4.4940 -0.8833 1.6829 41 1 6.7505 -1.3505 0.8154 42 1 7.0745 -3.0846 -0.9026 43 1 5.1430 -4.3572 -1.7469 44 1 2.8876 -3.8961 -0.8730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602608214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:32 Heat of formation + Delta-G solvation = -50.314843 kcal Electronic energy + Delta-G solvation = -21915.390884 eV Core-core repulsion = 18831.423822 eV Total energy + Delta-G solvation = -3083.967062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73563 -38.95581 -37.63324 -35.01227 -33.77225 -32.25797 -31.72090 -30.68733 -28.09415 -27.52266 -27.17527 -23.97458 -23.44240 -22.34971 -22.06108 -21.55271 -18.42618 -18.03120 -17.72753 -16.78698 -16.59566 -16.18458 -15.59762 -15.51095 -15.22437 -15.07046 -14.78212 -14.30755 -14.21649 -13.81254 -13.58684 -13.44914 -13.26039 -13.15501 -13.03149 -12.86595 -12.71730 -12.54759 -12.40134 -12.25869 -12.16148 -12.03737 -11.90861 -11.71060 -11.46564 -11.06073 -10.49942 -10.46719 -9.80275 -9.66875 -8.98383 -8.08658 -6.20078 0.41547 0.52242 1.43967 1.44235 1.55483 2.44860 2.70431 2.88643 3.19590 3.53545 3.92395 4.01746 4.06820 4.16836 4.19522 4.28086 4.31489 4.34346 4.38777 4.60521 4.65700 4.68504 4.73052 4.78622 4.87288 4.87875 4.96038 4.99015 5.02946 5.08165 5.12722 5.18995 5.32795 5.39722 5.41715 5.58409 5.62955 5.68246 5.69121 5.80797 6.12917 6.26476 6.40297 6.63995 6.81451 6.94711 7.49787 8.97297 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.004414 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.413030 B = 6342.167058 C = 7125.630813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 C -0.142 4.142 4 O -0.384 6.384 5 C 0.147 3.853 6 H 0.073 0.927 7 C 0.077 3.923 8 N -0.679 5.679 9 C 0.216 3.784 10 H 0.000 1.000 11 C -0.153 4.153 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.008 3.992 15 N -0.924 5.924 16 Si 0.962 3.038 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.016 0.984 35 H 0.334 0.666 36 H 0.019 0.981 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 7.557 -16.575 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 C -0.199 4.199 4 O -0.304 6.304 5 C 0.088 3.912 6 H 0.091 0.909 7 C -0.053 4.053 8 N -0.309 5.309 9 C 0.107 3.893 10 H 0.018 0.982 11 C -0.212 4.212 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.141 4.141 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.152 0.848 36 H 0.038 0.962 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.701 7.038 -16.579 20.950 hybrid contribution -0.483 0.066 1.084 1.189 sum 10.218 7.104 -15.495 19.874 Atomic orbital electron populations 1.22288 0.95716 1.02171 1.02778 1.22218 0.93777 0.94214 0.87606 1.21823 1.01389 0.93642 1.03040 1.87934 1.86310 1.18986 1.37128 1.20820 0.92498 0.81766 0.96086 0.90917 1.21891 0.90415 0.98784 0.94242 1.60705 1.21129 1.19599 1.29482 1.18936 0.95245 0.91533 0.83557 0.98220 1.22208 0.96266 0.98937 1.03828 1.21425 0.94012 1.38507 1.01240 0.92627 1.25742 1.01928 0.95777 0.95558 1.70017 1.35582 1.43533 1.07295 0.85490 0.80111 0.78560 0.77034 1.20248 1.20913 1.19296 1.20421 0.95726 0.98075 0.97942 1.21059 0.92719 0.99304 0.99583 1.21431 0.96904 0.98746 0.97635 1.21515 0.99945 0.95690 0.96815 1.21433 0.92110 1.00223 1.00520 1.21266 0.98714 0.97435 0.96672 0.93372 0.92674 0.89955 0.92177 0.92393 0.89348 0.92492 0.91585 0.96559 0.84821 0.96198 0.95129 0.91870 0.93012 0.86749 0.84268 0.83486 0.83672 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 9.49 71.98 0.68 -3.45 16 2 C 0.08 1.92 3.11 30.59 0.10 2.01 16 3 C -0.14 -2.82 9.56 71.98 0.69 -2.13 16 4 O -0.38 -11.74 8.44 -148.98 -1.26 -12.99 16 5 C 0.15 4.56 2.34 29.85 0.07 4.63 16 6 H 0.07 2.26 7.34 -2.39 -0.02 2.24 16 7 C 0.08 2.95 5.16 86.30 0.45 3.40 16 8 N -0.68 -30.31 6.24 -495.44 -3.09 -33.40 16 9 C 0.22 11.44 2.57 44.17 0.11 11.55 16 10 H 0.00 -0.01 7.82 -2.38 -0.02 -0.03 16 11 C -0.15 -7.81 8.94 71.98 0.64 -7.16 16 12 C -0.51 -29.31 8.84 25.60 0.23 -29.08 16 13 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 14 C 0.01 0.45 5.30 84.65 0.45 0.90 16 15 N -0.92 -54.49 11.32 21.45 0.24 -54.24 16 16 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 C -0.12 -3.33 4.81 -19.87 -0.10 -3.43 16 21 C -0.11 -2.85 9.36 22.27 0.21 -2.64 16 22 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 23 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 25 C -0.12 -2.95 9.67 22.27 0.22 -2.73 16 26 H 0.05 1.32 7.79 -2.39 -0.02 1.30 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.38 7.76 -2.39 -0.02 1.37 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 34 H 0.02 0.66 7.40 -2.38 -0.02 0.64 16 35 H 0.33 14.64 7.98 -89.70 -0.72 13.93 16 36 H 0.02 0.91 7.43 -2.39 -0.02 0.89 16 37 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 38 H 0.06 3.54 6.07 -2.38 -0.01 3.53 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.11 3.17 7.77 -2.91 -0.02 3.14 16 41 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.13 2.81 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -63.30 358.79 2.57 -60.73 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.24 Total: 28.11 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.41 Total: -34.95 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.85 Total: -87.64 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -1.26 Total: -12.99 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -63.30 2.57 -60.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.416 kcal (2) G-P(sol) polarization free energy of solvation -63.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds