Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 O 1.42898 * 109.47292 * 120.00491 * 2 1 3 5 5 C 1.42893 * 114.00136 * 149.99720 * 4 2 1 6 6 H 1.09000 * 109.47266 * 30.00066 * 5 4 2 7 7 C 1.53001 * 109.47217 * 269.99927 * 5 4 2 8 8 N 1.46895 * 109.47245 * 64.99835 * 7 5 4 9 9 C 1.46900 * 111.00327 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.46835 * 34.99881 * 9 8 7 11 11 C 1.53001 * 109.46977 * 275.00403 * 9 8 7 12 12 C 1.50699 * 109.47374 * 154.99947 * 9 8 7 13 13 H 1.08002 * 119.99821 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99820 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00232 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99750 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47205 * 60.00068 * 16 14 12 18 18 H 1.48501 * 109.47188 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47116 * 299.99941 * 16 14 12 20 20 C 1.50703 * 109.47481 * 149.99814 * 5 4 2 21 21 C 1.38235 * 120.00292 * 220.00139 * 20 5 4 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 5 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 39.97431 * 20 5 4 26 26 H 1.09003 * 109.46800 * 299.99690 * 1 2 3 27 27 H 1.08997 * 109.47431 * 59.99563 * 1 2 3 28 28 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46800 * 240.00310 * 2 1 3 30 30 H 1.09003 * 109.46961 * 60.00408 * 3 2 1 31 31 H 1.09001 * 109.47055 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47332 * 300.00110 * 3 2 1 33 33 H 1.09007 * 109.47213 * 185.00084 * 7 5 4 34 34 H 1.08998 * 109.47120 * 304.99558 * 7 5 4 35 35 H 1.00894 * 111.00233 * 303.95864 * 8 7 5 36 36 H 1.09001 * 109.47515 * 59.99616 * 11 9 8 37 37 H 1.09003 * 109.46948 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.46912 * 299.99431 * 11 9 8 39 39 H 0.96999 * 119.99868 * 179.97438 * 15 14 12 40 40 H 1.08001 * 119.99730 * 359.97438 * 21 20 5 41 41 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 43 43 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00455 * 0.02562 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 1 3.8530 -0.7831 0.2467 7 6 3.0355 -2.7589 0.5084 8 7 2.4179 -2.7360 -0.8242 9 6 2.1807 -4.0990 -1.3181 10 1 1.9142 -4.7468 -0.4830 11 6 3.4510 -4.6270 -1.9879 12 6 1.0547 -4.0816 -2.3196 13 1 0.5646 -3.1510 -2.5649 14 6 0.6510 -5.2536 -2.9233 15 7 1.2482 -6.3867 -2.6249 16 14 -0.7442 -5.2319 -4.1652 17 1 -0.3809 -4.3491 -5.3026 18 1 -0.9841 -6.6098 -4.6644 19 1 -1.9774 -4.7198 -3.5154 20 6 4.0098 -1.3469 2.2989 21 6 5.3731 -1.1195 2.3238 22 6 6.0553 -1.1394 3.5259 23 6 5.3741 -1.3859 4.7032 24 6 4.0106 -1.6119 4.6785 25 6 3.3287 -1.5942 3.4761 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6768 1.9563 0.8901 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 3.9900 -3.2829 0.4576 34 1 2.3751 -3.2739 1.2061 35 1 1.5629 -2.2004 -0.8174 36 1 4.2654 -4.6395 -1.2636 37 1 3.2751 -5.6385 -2.3540 38 1 3.7175 -3.9792 -2.8230 39 1 0.9639 -7.2112 -3.0493 40 1 5.9052 -0.9262 1.4041 41 1 7.1205 -0.9622 3.5454 42 1 5.9077 -1.4059 5.6420 43 1 3.4784 -1.8049 5.5982 44 1 2.2636 -1.7718 3.4567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602608216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -46.901857 kcal Electronic energy + Delta-G solvation = -22048.391205 eV Core-core repulsion = 18964.572141 eV Total energy + Delta-G solvation = -3083.819064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74089 -39.20190 -37.40081 -34.96560 -33.94209 -32.24194 -31.71670 -30.75391 -28.20127 -27.74172 -27.11700 -24.06250 -23.54053 -22.23878 -21.87158 -21.54328 -18.62312 -18.10026 -17.66380 -16.92128 -16.45985 -16.22910 -15.57189 -15.54961 -15.33393 -15.12937 -14.67975 -14.46744 -14.22319 -13.92478 -13.66530 -13.43892 -13.17287 -13.14783 -12.94859 -12.88148 -12.75816 -12.65501 -12.40295 -12.25867 -12.17966 -12.10140 -11.90326 -11.70688 -11.37641 -10.90695 -10.58984 -10.44552 -9.79644 -9.65029 -9.17653 -8.14376 -6.29424 0.41558 0.52966 1.41959 1.43949 1.51556 2.40435 2.65815 2.91161 3.13988 3.48775 3.91067 4.02003 4.10235 4.12646 4.17031 4.26510 4.31489 4.33695 4.44928 4.51275 4.67506 4.70151 4.78264 4.79980 4.85704 4.93054 4.98252 5.02404 5.04712 5.09340 5.18420 5.19879 5.30160 5.36732 5.43550 5.58601 5.63183 5.63783 5.69254 5.82343 6.12902 6.18923 6.36345 6.39688 6.69686 6.93859 7.40922 8.91315 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.004678 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.009874 B = 5984.459932 C = 6902.296093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 C -0.162 4.162 4 O -0.386 6.386 5 C 0.145 3.855 6 H 0.077 0.923 7 C 0.050 3.950 8 N -0.683 5.683 9 C 0.215 3.785 10 H -0.037 1.037 11 C -0.112 4.112 12 C -0.538 4.538 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.111 4.111 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.009 0.991 35 H 0.335 0.665 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.263 0.737 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 13.819 11.095 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 C -0.220 4.220 4 O -0.306 6.306 5 C 0.087 3.913 6 H 0.095 0.905 7 C -0.080 4.080 8 N -0.316 5.316 9 C 0.106 3.894 10 H -0.020 1.020 11 C -0.170 4.170 12 C -0.576 4.576 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.148 4.148 25 C -0.129 4.129 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.154 0.846 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.470 13.686 10.885 18.645 hybrid contribution -1.437 -0.887 -0.390 1.733 sum 5.034 12.800 10.494 17.300 Atomic orbital electron populations 1.21855 0.93245 1.01990 1.03264 1.22463 0.95469 0.93283 0.88195 1.22205 1.01234 0.95520 1.03021 1.87891 1.36379 1.69778 1.36526 1.20797 0.85023 0.91563 0.93950 0.90464 1.22422 0.99019 0.96635 0.89902 1.60897 1.31738 1.16217 1.22728 1.18930 0.93677 0.84310 0.92452 1.01963 1.21527 0.95863 1.01276 0.98334 1.21505 1.17180 0.94163 1.24782 0.92205 1.25747 0.99182 0.94980 0.98622 1.70024 1.42509 0.99022 1.44163 0.85534 0.79313 0.77163 0.79172 1.19347 1.20926 1.19554 1.19777 0.94452 1.01495 0.94028 1.21222 0.92972 1.00026 0.99597 1.21435 1.01112 0.99670 0.91888 1.21527 0.94237 0.98790 0.99352 1.21433 0.95369 1.00159 0.97817 1.21076 1.00007 0.99122 0.92708 0.91438 0.89526 0.93859 0.91402 0.91902 0.92808 0.90176 0.91438 0.97252 0.84578 0.96159 0.92400 0.94984 0.92797 0.84981 0.83318 0.83305 0.84267 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.51 71.98 0.68 -3.21 16 2 C 0.06 1.82 2.15 30.59 0.07 1.88 16 3 C -0.16 -3.72 9.52 71.98 0.69 -3.03 16 4 O -0.39 -12.52 8.88 -148.98 -1.32 -13.84 16 5 C 0.14 4.65 2.55 29.85 0.08 4.73 16 6 H 0.08 2.39 7.48 -2.39 -0.02 2.38 16 7 C 0.05 1.97 5.16 86.30 0.45 2.42 16 8 N -0.68 -30.17 5.67 -495.45 -2.81 -32.98 16 9 C 0.21 11.37 2.60 44.17 0.11 11.48 16 10 H -0.04 -2.21 7.80 -2.39 -0.02 -2.23 16 11 C -0.11 -5.73 9.19 71.98 0.66 -5.07 16 12 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 13 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 14 C 0.01 0.78 5.30 84.65 0.45 1.23 16 15 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 16 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.10 -2.80 4.97 -19.87 -0.10 -2.90 16 21 C -0.12 -2.92 9.67 22.27 0.22 -2.71 16 22 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 24 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 25 C -0.11 -3.11 9.36 22.27 0.21 -2.91 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.20 5.63 -2.39 -0.01 2.19 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.67 7.44 -2.38 -0.02 2.65 16 34 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 35 H 0.33 14.50 5.39 -89.70 -0.48 14.02 16 36 H 0.02 0.92 7.45 -2.39 -0.02 0.90 16 37 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.13 2.84 8.04 -2.91 -0.02 2.81 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.11 3.34 7.78 -2.91 -0.02 3.32 16 Total: -1.00 -63.11 353.51 3.01 -60.10 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.47 Total: 29.42 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.40 Total: -34.89 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.57 Total: -86.39 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.32 Total: -13.84 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -63.11 3.01 -60.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602608216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.200 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds