Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99862 * 2 1 4 4 C 1.53001 * 109.46919 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47011 * 180.02562 * 4 3 2 6 6 C 1.38133 * 120.03523 * 264.99899 * 5 4 3 7 7 C 1.38265 * 120.07407 * 180.25285 * 6 5 4 8 8 C 1.38306 * 120.14784 * 359.44555 * 7 6 5 9 9 C 1.38089 * 120.07673 * 0.55309 * 8 7 6 10 10 C 1.38886 * 120.04213 * 84.97143 * 5 4 3 11 11 N 1.39676 * 120.07159 * 0.02562 * 10 5 4 12 12 C 1.46500 * 119.99671 * 179.97438 * 11 10 5 13 13 C 1.53005 * 109.46841 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47004 * 304.99809 * 13 12 11 15 15 C 1.52996 * 109.47160 * 65.00017 * 13 12 11 16 16 C 1.53003 * 109.47026 * 184.99873 * 13 12 11 17 17 C 1.50703 * 109.46984 * 174.99710 * 16 13 12 18 18 H 1.07992 * 120.00045 * 0.02562 * 17 16 13 19 19 C 1.37882 * 119.99862 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99947 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47166 * 90.00180 * 21 19 17 23 23 H 1.48496 * 109.47087 * 210.00075 * 21 19 17 24 24 H 1.48502 * 109.47225 * 330.00350 * 21 19 17 25 25 H 1.09000 * 109.47547 * 59.99810 * 1 2 3 26 26 H 1.08997 * 109.47466 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47410 * 299.99948 * 1 2 3 28 28 H 1.08998 * 109.46983 * 60.00057 * 3 2 1 29 29 H 1.08998 * 109.47030 * 300.00053 * 3 2 1 30 30 H 1.08997 * 109.47426 * 59.99483 * 4 3 2 31 31 H 1.08998 * 109.46968 * 299.99668 * 4 3 2 32 32 H 1.08002 * 119.95961 * 359.97131 * 6 5 4 33 33 H 1.08001 * 119.92315 * 179.69829 * 7 6 5 34 34 H 1.08003 * 119.96002 * 180.27453 * 8 7 6 35 35 H 1.07998 * 120.03790 * 179.70139 * 9 8 7 36 36 H 0.96994 * 120.00263 * 359.97438 * 11 10 5 37 37 H 1.08994 * 109.47477 * 299.99510 * 12 11 10 38 38 H 1.08998 * 109.47329 * 59.99840 * 12 11 10 39 39 H 1.08999 * 109.47010 * 299.99503 * 15 13 12 40 40 H 1.09002 * 109.47331 * 59.99993 * 15 13 12 41 41 H 1.09005 * 109.46967 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.47477 * 295.00020 * 16 13 12 43 43 H 1.09000 * 109.46905 * 55.00216 * 16 13 12 44 44 H 0.96995 * 119.99968 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 0.0000 6 6 4.5243 3.1514 -1.1911 7 6 5.0916 4.4123 -1.1910 8 6 5.2740 5.0918 -0.0002 9 6 4.9003 4.5079 1.1940 10 6 4.3353 3.2387 1.1980 11 7 3.9562 2.6451 2.4042 12 6 4.1547 3.3608 3.6669 13 6 3.6583 2.4954 4.8270 14 1 2.6221 2.2081 4.6485 15 6 4.5249 1.2390 4.9333 16 6 3.7498 3.2899 6.1314 17 6 3.1477 2.4841 7.2536 18 1 2.7409 1.5034 7.0563 19 6 3.1172 2.9987 8.5325 20 7 3.6130 4.1929 8.7728 21 14 2.3716 1.9996 9.9236 22 1 3.4252 1.1631 10.5522 23 1 1.7968 2.9177 10.9394 24 1 1.3000 1.1239 9.3850 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6437 0.8891 32 1 4.3792 2.6252 -2.1230 33 1 5.3891 4.8693 -2.1232 34 1 5.7133 6.0784 -0.0041 35 1 5.0475 5.0371 2.1239 36 1 3.5616 1.7591 2.4057 37 1 5.2151 3.5746 3.8006 38 1 3.5952 4.2960 3.6464 39 1 4.4596 0.6730 4.0041 40 1 5.5611 1.5263 5.1118 41 1 4.1709 0.6223 5.7595 42 1 4.7954 3.5008 6.3559 43 1 3.2048 4.2278 6.0246 44 1 3.5912 4.5550 9.6724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602632564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = -62.596350 kcal Electronic energy + Delta-G solvation = -21294.651598 eV Core-core repulsion = 18210.151970 eV Total energy + Delta-G solvation = -3084.499629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74350 -38.76321 -38.07018 -35.56377 -34.42275 -33.75457 -30.43714 -29.75193 -28.64735 -27.26549 -27.04073 -24.92825 -24.35878 -22.46438 -21.84081 -20.74593 -18.57450 -18.24417 -17.50849 -17.21766 -16.58857 -16.50364 -16.11734 -16.08177 -15.72787 -15.05623 -14.89654 -14.50033 -14.26798 -14.14285 -14.03427 -13.80677 -13.47892 -13.37696 -12.81611 -12.77627 -12.65857 -12.48659 -12.28961 -12.16120 -12.08764 -11.93533 -11.72264 -11.68652 -11.18789 -11.04844 -10.90086 -10.62753 -10.55022 -9.63622 -8.24517 -8.19092 -6.28227 0.53410 0.79458 1.40206 1.40530 1.51391 2.39701 2.56915 2.76197 3.09723 3.14979 3.91980 3.98961 4.06494 4.15035 4.19150 4.22877 4.33360 4.38558 4.47864 4.50908 4.54908 4.62757 4.64851 4.72994 4.75296 4.83874 4.88849 4.90056 4.96586 5.06287 5.19297 5.26690 5.28417 5.41662 5.49393 5.51252 5.69060 5.74098 5.80111 5.84499 6.05850 6.19374 6.25216 6.46196 6.84731 6.88255 7.40221 8.92943 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.003961 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.332090 B = 7068.067162 C = 8448.684423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.068 3.932 4 C -0.062 4.062 5 C -0.174 4.174 6 C -0.068 4.068 7 C -0.186 4.186 8 C -0.077 4.077 9 C -0.219 4.219 10 C 0.211 3.789 11 N -0.739 5.739 12 C 0.142 3.858 13 C -0.085 4.085 14 H 0.059 0.941 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.264 1.264 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.400 0.600 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.049 0.951 42 H -0.005 1.005 43 H -0.009 1.009 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 -4.060 -21.747 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.100 4.100 5 C -0.179 4.179 6 C -0.087 4.087 7 C -0.206 4.206 8 C -0.096 4.096 9 C -0.242 4.242 10 C 0.106 3.894 11 N -0.369 5.369 12 C 0.018 3.982 13 C -0.104 4.104 14 H 0.078 0.922 15 C -0.182 4.182 16 C -0.002 4.002 17 C -0.568 4.568 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.188 1.188 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.237 0.763 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.013 0.987 43 H 0.009 0.991 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.939 -3.996 -21.421 21.811 hybrid contribution -0.620 -0.046 1.399 1.531 sum -1.558 -4.042 -20.022 20.485 Atomic orbital electron populations 1.22910 0.79728 1.03840 1.00604 1.87815 1.21253 1.28578 1.95567 1.22536 0.93717 0.84200 1.00414 1.20182 0.92578 0.93467 1.03766 1.19249 1.09024 0.97530 0.92067 1.21075 0.95689 0.95042 0.96871 1.21151 1.04959 0.96106 0.98425 1.21159 0.96823 0.99790 0.91802 1.20831 1.08194 0.95743 0.99427 1.17948 0.93165 0.92296 0.85973 1.44877 1.68799 1.20339 1.02908 1.21237 0.99571 0.94788 0.82610 1.21201 0.99009 0.96101 0.94043 0.92226 1.21626 0.98887 0.96860 1.00788 1.18944 0.95212 0.94314 0.91723 1.21605 1.38534 1.02941 0.93769 0.92030 1.25913 0.96067 0.96043 1.01701 1.70092 1.47429 1.18132 1.21760 0.85528 0.78862 0.78484 0.78684 1.19926 1.20979 1.18801 0.92866 0.88268 0.94166 0.94371 0.92221 0.89061 0.91719 0.83995 0.84192 0.84678 0.86971 0.76289 0.92991 0.93430 0.92237 0.93825 0.93208 0.98705 0.99070 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.49 10.70 -148.98 -1.59 -11.09 16 3 C 0.07 1.47 5.92 71.98 0.43 1.89 16 4 C -0.06 -1.33 5.15 29.85 0.15 -1.18 16 5 C -0.17 -4.08 5.15 -19.73 -0.10 -4.18 16 6 C -0.07 -1.36 9.68 22.25 0.22 -1.14 16 7 C -0.19 -3.66 10.04 22.29 0.22 -3.43 16 8 C -0.08 -1.73 10.04 22.25 0.22 -1.51 16 9 C -0.22 -6.00 9.31 22.40 0.21 -5.79 16 10 C 0.21 5.82 6.63 38.21 0.25 6.08 16 11 N -0.74 -21.65 5.36 -339.42 -1.82 -23.47 16 12 C 0.14 4.87 4.30 86.38 0.37 5.24 16 13 C -0.08 -3.34 2.37 -10.79 -0.03 -3.37 16 14 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.12 -4.50 8.88 71.98 0.64 -3.86 16 16 C 0.04 1.83 4.45 29.85 0.13 1.96 16 17 C -0.53 -29.41 8.41 25.60 0.22 -29.20 16 18 H 0.06 3.28 7.05 -2.91 -0.02 3.26 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 21 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 31 H 0.06 1.49 6.81 -2.39 -0.02 1.47 16 32 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.11 3.21 6.74 -2.91 -0.02 3.20 16 36 H 0.40 11.15 5.76 -92.71 -0.53 10.62 16 37 H 0.05 1.81 7.95 -2.39 -0.02 1.79 16 38 H 0.05 1.69 7.95 -2.39 -0.02 1.68 16 39 H 0.06 1.79 7.18 -2.39 -0.02 1.78 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.93 6.95 -2.38 -0.02 1.91 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -63.54 357.22 3.97 -59.57 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.42 Total: 21.41 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.65 Total: -36.32 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.54 Total: -79.59 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.59 Total: -11.09 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.54 3.97 -59.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602632564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.022 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds