Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 O 1.42895 * 109.47241 * 120.00195 * 2 1 3 5 5 C 1.35901 * 117.00417 * 84.74769 * 4 2 1 6 6 C 1.38809 * 120.02424 * 174.65545 * 5 4 2 7 7 C 1.38168 * 120.09693 * 180.02562 * 6 5 4 8 8 C 1.38163 * 120.12515 * 359.70155 * 7 6 5 9 9 C 1.38928 * 120.03609 * 0.55442 * 8 7 6 10 10 N 1.39670 * 120.04827 * 179.74750 * 9 8 7 11 11 C 1.46494 * 119.99782 * 359.72093 * 10 9 8 12 12 C 1.53007 * 109.47050 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46496 * 305.00046 * 12 11 10 14 14 C 1.53000 * 109.47147 * 64.99950 * 12 11 10 15 15 C 1.52992 * 109.46939 * 185.00440 * 12 11 10 16 16 C 1.50702 * 109.47180 * 175.00071 * 15 12 11 17 17 H 1.08009 * 119.99784 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00563 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99533 * 359.72697 * 18 16 15 20 20 Si 1.86799 * 120.00273 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47304 * 269.72797 * 20 18 16 22 22 H 1.48501 * 109.46827 * 29.73115 * 20 18 16 23 23 H 1.48496 * 109.46994 * 149.72508 * 20 18 16 24 24 C 1.38579 * 120.01298 * 354.63875 * 5 4 2 25 25 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47032 * 299.99522 * 1 2 3 27 27 H 1.08992 * 109.47730 * 59.99493 * 1 2 3 28 28 H 1.08993 * 109.46955 * 240.00197 * 2 1 3 29 29 H 1.08997 * 109.46832 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47224 * 300.00098 * 3 2 1 31 31 H 1.09006 * 109.46889 * 60.00391 * 3 2 1 32 32 H 1.08004 * 119.95273 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.93884 * 180.02562 * 7 6 5 34 34 H 1.07997 * 119.98317 * 180.28059 * 8 7 6 35 35 H 0.97004 * 119.99768 * 179.72330 * 10 9 8 36 36 H 1.09004 * 109.47246 * 60.00301 * 11 10 9 37 37 H 1.09000 * 109.47662 * 300.00171 * 11 10 9 38 38 H 1.08996 * 109.46998 * 180.02562 * 14 12 11 39 39 H 1.09003 * 109.46853 * 300.00405 * 14 12 11 40 40 H 1.08997 * 109.46742 * 60.00231 * 14 12 11 41 41 H 1.09000 * 109.47829 * 54.99820 * 15 12 11 42 42 H 1.09003 * 109.47293 * 294.99527 * 15 12 11 43 43 H 0.96999 * 120.00352 * 0.27116 * 19 18 16 44 44 H 1.07999 * 120.06307 * 0.03927 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1075 -2.0272 1.0996 6 6 2.6666 -2.7351 2.1547 7 6 2.7707 -4.1112 2.0878 8 6 2.3132 -4.7879 0.9735 9 6 1.7576 -4.0844 -0.0878 10 7 1.2998 -4.7678 -1.2166 11 6 1.4110 -6.2269 -1.2846 12 6 0.8411 -6.7204 -2.6161 13 1 -0.1798 -6.3564 -2.7314 14 6 1.7030 -6.1947 -3.7658 15 6 0.8424 -8.2501 -2.6357 16 6 0.1696 -8.7370 -3.8932 17 1 -0.2204 -8.0262 -4.6068 18 6 0.0517 -10.0897 -4.1327 19 7 0.5314 -10.9551 -3.2664 20 14 -0.7830 -10.6931 -5.6911 21 1 -2.2356 -10.8695 -5.4382 22 1 -0.5866 -9.6973 -6.7751 23 1 -0.1901 -11.9920 -6.0990 24 6 1.6522 -2.7016 -0.0221 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.0216 -2.2093 3.0288 33 1 3.2058 -4.6594 2.9103 34 1 2.3916 -5.8640 0.9256 35 1 0.9083 -4.2762 -1.9555 36 1 0.8516 -6.6727 -0.4620 37 1 2.4594 -6.5154 -1.2093 38 1 1.2967 -6.5459 -4.7143 39 1 1.7020 -5.1048 -3.7517 40 1 2.7238 -6.5587 -3.6503 41 1 0.3026 -8.6252 -1.7662 42 1 1.8700 -8.6130 -2.6097 43 1 0.9645 -10.6418 -2.4569 44 1 1.2173 -2.1525 -0.8441 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602675336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = -59.112583 kcal Electronic energy + Delta-G solvation = -21034.201794 eV Core-core repulsion = 17949.853233 eV Total energy + Delta-G solvation = -3084.348561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26480 -39.43361 -37.89098 -35.75429 -34.26307 -33.62951 -31.19483 -29.80232 -28.41348 -28.17053 -27.15357 -24.91986 -24.29811 -22.53831 -21.88783 -20.95016 -19.32015 -18.82788 -17.64856 -16.96774 -16.49744 -16.30038 -16.17082 -15.74901 -15.66757 -15.28472 -14.96080 -14.58031 -14.44718 -14.15310 -13.74708 -13.64675 -13.46747 -13.22568 -13.11704 -13.01731 -12.83548 -12.56025 -12.46718 -12.19759 -12.01178 -11.95495 -11.87009 -11.70648 -11.59431 -11.44339 -10.81923 -10.63112 -10.53493 -9.31545 -8.66145 -8.36758 -6.35936 0.51558 0.69927 1.52279 1.61054 1.78087 2.24819 2.45091 2.58081 2.93365 3.17980 3.84360 3.89111 3.96374 4.00157 4.04115 4.13770 4.21724 4.25232 4.35086 4.49494 4.57562 4.63034 4.68401 4.68852 4.75630 4.79204 4.83466 4.87409 4.96920 5.00257 5.15149 5.18559 5.23742 5.26227 5.30575 5.37640 5.46227 5.56040 5.63974 5.78688 6.01336 6.21077 6.28464 6.52747 6.60718 6.80928 7.44846 8.74905 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.002993 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.435219 B = 9351.679907 C =10059.920639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 C -0.144 4.144 4 O -0.322 6.322 5 C 0.166 3.834 6 C -0.226 4.226 7 C -0.033 4.033 8 C -0.254 4.254 9 C 0.243 3.757 10 N -0.735 5.735 11 C 0.142 3.858 12 C -0.079 4.079 13 H 0.062 0.938 14 C -0.124 4.124 15 C 0.018 3.982 16 C -0.605 4.605 17 H 0.054 0.946 18 C -0.042 4.042 19 N -0.942 5.942 20 Si 1.117 2.883 21 H -0.274 1.274 22 H -0.268 1.268 23 H -0.285 1.285 24 C -0.293 4.293 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.403 0.597 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.041 0.959 41 H -0.013 1.013 42 H -0.009 1.009 43 H 0.256 0.744 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 23.423 6.901 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 C -0.201 4.201 4 O -0.237 6.237 5 C 0.120 3.880 6 C -0.247 4.247 7 C -0.051 4.051 8 C -0.277 4.277 9 C 0.138 3.862 10 N -0.364 5.364 11 C 0.018 3.982 12 C -0.098 4.098 13 H 0.080 0.920 14 C -0.181 4.181 15 C -0.020 4.020 16 C -0.643 4.643 17 H 0.072 0.928 18 C -0.239 4.239 19 N -0.580 5.580 20 Si 0.939 3.061 21 H -0.200 1.200 22 H -0.192 1.192 23 H -0.211 1.211 24 C -0.316 4.316 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.135 0.865 35 H 0.239 0.761 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.005 0.995 42 H 0.009 0.991 43 H 0.065 0.935 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.348 22.010 6.220 22.993 hybrid contribution 0.243 0.921 0.588 1.119 sum 2.591 22.931 6.808 24.060 Atomic orbital electron populations 1.22364 0.94494 1.02646 1.03937 1.22681 0.94928 0.94401 0.86817 1.21872 1.01946 0.92287 1.04036 1.86097 1.81134 1.16252 1.40175 1.18825 0.93042 0.82474 0.93669 1.20382 1.10259 0.93967 1.00086 1.20925 0.94411 0.93102 0.96708 1.20775 1.10805 1.00031 0.96041 1.17770 0.90592 0.90845 0.87012 1.44757 1.67370 1.05816 1.18429 1.21254 0.99792 0.79910 0.97250 1.21088 0.99018 0.95832 0.93824 0.91992 1.21623 0.98688 0.99786 0.98022 1.19133 0.94756 0.92369 0.95712 1.22431 1.40513 0.94419 1.06977 0.92761 1.27360 0.96645 0.94310 1.05569 1.70885 1.38040 1.37624 1.11460 0.82930 0.75815 0.75679 0.71698 1.19988 1.19247 1.21097 1.20680 1.16221 0.92959 1.01778 0.93084 0.91564 0.89122 0.90847 0.91923 0.88501 0.91431 0.84634 0.83342 0.86492 0.76084 0.93349 0.92814 0.93368 0.91618 0.93984 0.99451 0.99062 0.93499 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.17 71.98 0.66 -2.01 16 2 C 0.07 1.13 2.85 30.59 0.09 1.22 16 3 C -0.14 -1.74 9.56 71.98 0.69 -1.05 16 4 O -0.32 -7.42 9.80 -92.44 -0.91 -8.32 16 5 C 0.17 4.19 6.60 22.49 0.15 4.34 16 6 C -0.23 -5.46 9.98 22.39 0.22 -5.24 16 7 C -0.03 -0.78 10.03 22.24 0.22 -0.56 16 8 C -0.25 -7.04 9.31 22.42 0.21 -6.83 16 9 C 0.24 6.83 6.65 38.20 0.25 7.09 16 10 N -0.74 -20.81 5.46 -339.47 -1.85 -22.66 16 11 C 0.14 4.73 4.30 86.38 0.37 5.10 16 12 C -0.08 -3.04 2.37 -10.79 -0.03 -3.06 16 13 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.12 -4.35 8.88 71.98 0.64 -3.71 16 15 C 0.02 0.90 3.76 29.85 0.11 1.01 16 16 C -0.61 -33.62 8.41 25.60 0.22 -33.41 16 17 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 18 C -0.04 -2.40 5.46 84.66 0.46 -1.94 16 19 N -0.94 -58.40 13.65 21.45 0.29 -58.11 16 20 Si 1.12 49.98 29.90 68.60 2.05 52.04 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.29 -7.41 8.08 22.49 0.18 -7.23 16 25 H 0.05 0.93 6.89 -2.39 -0.02 0.91 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.23 6.32 -2.39 -0.02 1.22 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.12 3.30 6.73 -2.91 -0.02 3.28 16 35 H 0.40 10.21 7.67 -92.70 -0.71 9.50 16 36 H 0.05 1.68 7.94 -2.39 -0.02 1.66 16 37 H 0.05 1.81 7.96 -2.39 -0.02 1.80 16 38 H 0.05 1.85 6.95 -2.39 -0.02 1.83 16 39 H 0.06 1.85 7.18 -2.39 -0.02 1.84 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 42 H -0.01 -0.48 8.00 -2.39 -0.02 -0.50 16 43 H 0.26 16.01 7.22 -92.71 -0.67 15.34 16 44 H 0.14 2.99 5.42 -2.91 -0.02 2.97 16 Total: -1.00 -65.35 351.99 4.39 -60.95 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.36 Total: 22.39 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 4.45 Total: -46.29 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.56 Total: -80.77 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.91 Total: -8.32 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.04 kcal Total: -65.35 4.39 -60.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602675336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.841 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds