Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39863 * 126.04315 * 2 1 4 4 N 1.30835 * 108.20088 * 180.02562 * 3 2 1 5 5 N 1.40074 * 108.20976 * 359.97438 * 4 3 2 6 6 C 1.46505 * 126.04047 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.64037 * 23.33251 * 6 5 4 8 8 C 1.54596 * 110.72441 * 146.47631 * 6 5 4 9 9 C 1.53995 * 105.13824 * 140.31740 * 8 6 5 10 10 N 1.47901 * 107.05812 * 1.22823 * 9 8 6 11 11 C 1.46901 * 110.99937 * 214.15583 * 10 9 8 12 12 C 1.52999 * 109.46783 * 175.84010 * 11 10 9 13 13 H 1.09004 * 109.47309 * 305.04646 * 12 11 10 14 14 C 1.52997 * 109.47434 * 65.05548 * 12 11 10 15 15 C 1.53004 * 109.46632 * 185.05297 * 12 11 10 16 16 C 1.50708 * 109.46914 * 174.99995 * 15 12 11 17 17 H 1.07995 * 119.99843 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99729 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99695 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47571 * 89.99679 * 20 18 16 22 22 H 1.48502 * 109.47173 * 209.99715 * 20 18 16 23 23 H 1.48504 * 109.47124 * 329.99807 * 20 18 16 24 24 C 1.48537 * 105.81925 * 334.66830 * 10 9 8 25 25 C 1.34947 * 107.92642 * 0.26282 * 5 4 3 26 26 H 1.08995 * 109.47362 * 89.97459 * 1 2 3 27 27 H 1.09004 * 109.46743 * 209.97532 * 1 2 3 28 28 H 1.09004 * 109.46472 * 329.97094 * 1 2 3 29 29 H 1.07997 * 125.89446 * 0.02562 * 3 2 1 30 30 H 1.09003 * 110.30710 * 21.40786 * 8 6 5 31 31 H 1.08996 * 110.39520 * 259.27565 * 8 6 5 32 32 H 1.08996 * 109.92130 * 241.87447 * 9 8 6 33 33 H 1.08997 * 110.07913 * 120.67213 * 9 8 6 34 34 H 1.08991 * 109.47424 * 55.84133 * 11 10 9 35 35 H 1.08998 * 109.46639 * 295.83342 * 11 10 9 36 36 H 1.09001 * 109.47135 * 175.09414 * 14 12 11 37 37 H 1.09005 * 109.47065 * 295.09086 * 14 12 11 38 38 H 1.08995 * 109.47458 * 55.08946 * 14 12 11 39 39 H 1.09001 * 109.47019 * 294.99475 * 15 12 11 40 40 H 1.08998 * 109.47268 * 55.00349 * 15 12 11 41 41 H 0.97003 * 119.99513 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.66689 * 157.64171 * 24 10 9 43 43 H 1.08997 * 110.66735 * 280.77106 * 24 10 9 44 44 H 1.07997 * 126.12948 * 179.73258 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7300 -0.0006 5 7 3.5844 -0.6707 -0.0003 6 6 4.7746 -1.5250 -0.0013 7 1 5.6333 -0.9882 0.4018 8 6 4.5168 -2.8232 0.7977 9 6 5.2091 -3.9367 -0.0099 10 7 5.8458 -3.2927 -1.1793 11 6 5.8118 -4.1779 -2.3511 12 6 6.3839 -3.4409 -3.5637 13 1 5.8431 -2.5056 -3.7088 14 6 7.8655 -3.1419 -3.3266 15 6 6.2332 -4.3157 -4.8099 16 6 6.6833 -3.5434 -6.0232 17 1 7.0407 -2.5299 -5.9162 18 6 6.6379 -4.1304 -7.2700 19 7 6.2023 -5.3644 -7.4003 20 14 7.1952 -3.1728 -8.7739 21 1 8.6464 -3.3979 -8.9945 22 1 6.4362 -3.6345 -9.9639 23 1 6.9459 -1.7247 -8.5591 24 6 5.0716 -2.0498 -1.4285 25 6 2.3032 -1.0943 -0.0055 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3632 0.8898 0.5143 29 1 1.9952 2.1576 0.0004 30 1 3.4466 -3.0172 0.8691 31 1 4.9547 -2.7498 1.7931 32 1 4.4717 -4.6666 -0.3438 33 1 5.9662 -4.4272 0.6018 34 1 4.7820 -4.4700 -2.5561 35 1 6.4091 -5.0676 -2.1517 36 1 8.2942 -2.6955 -4.2238 37 1 7.9672 -2.4486 -2.4916 38 1 8.3907 -4.0686 -3.0953 39 1 6.8454 -5.2110 -4.7015 40 1 5.1883 -4.6021 -4.9286 41 1 6.1708 -5.7774 -8.2774 42 1 5.6697 -1.3294 -1.9865 43 1 4.1449 -2.2732 -1.9569 44 1 1.9724 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602678332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 67.384345 kcal Electronic energy + Delta-G solvation = -21589.099441 eV Core-core repulsion = 18542.528950 eV Total energy + Delta-G solvation = -3046.570491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42021 -39.05663 -35.58362 -33.41018 -32.27984 -31.61052 -29.86798 -28.84118 -26.83983 -26.42663 -25.28598 -23.10889 -22.30498 -21.03599 -20.61137 -20.02098 -18.75268 -17.19247 -16.28756 -16.07963 -15.17953 -14.92137 -14.51484 -14.38114 -14.05922 -13.91129 -13.42728 -13.15398 -13.06247 -12.98246 -12.83526 -12.33022 -12.04712 -11.93230 -11.75123 -11.57844 -11.43999 -11.27994 -10.99151 -10.83463 -10.76224 -10.63187 -10.29730 -10.24583 -9.69672 -9.46771 -9.19489 -8.98185 -8.40464 -8.34668 -8.31472 -5.99345 -4.00490 1.80274 2.34066 2.70943 3.32434 3.38747 3.42358 4.08157 4.22173 4.39807 4.47468 4.63982 4.72453 4.77377 5.02900 5.11203 5.14905 5.36578 5.37539 5.45330 5.50525 5.57660 5.57885 5.66113 5.67558 5.80659 5.86034 5.90274 5.95826 6.05122 6.08856 6.34104 6.43831 6.57745 6.60803 6.85229 6.93648 6.99937 7.10854 7.20565 7.28174 7.64634 7.66246 7.81289 8.00333 8.44235 9.05601 9.63132 11.12193 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.003763 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.861027 B = 7438.533040 C = 8183.469927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.246 4.246 3 C 0.045 3.955 4 N -0.292 5.292 5 N -0.358 5.358 6 C 0.156 3.844 7 H 0.117 0.883 8 C -0.139 4.139 9 C 0.035 3.965 10 N -0.509 5.509 11 C 0.053 3.947 12 C -0.084 4.084 13 H 0.055 0.945 14 C -0.124 4.124 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.032 3.968 25 C 0.054 3.946 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.181 0.819 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 6.500 18.423 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.257 4.257 3 C -0.141 4.141 4 N -0.113 5.113 5 N -0.140 5.140 6 C 0.053 3.947 7 H 0.134 0.866 8 C -0.178 4.178 9 C -0.093 4.093 10 N -0.233 5.233 11 C -0.074 4.074 12 C -0.103 4.103 13 H 0.073 0.927 14 C -0.181 4.181 15 C -0.009 4.009 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.097 4.097 25 C -0.092 4.092 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.197 0.803 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.483 6.736 18.392 20.632 hybrid contribution -1.436 -0.141 -1.190 1.870 sum -7.919 6.595 17.202 20.053 Atomic orbital electron populations 1.20035 0.89428 1.01884 1.01560 1.20118 0.97049 0.91876 1.16674 1.23778 0.90012 0.99744 1.00579 1.77362 1.21250 0.88842 1.23817 1.48618 1.05058 1.04446 1.55905 1.22253 0.85474 0.89518 0.97473 0.86552 1.22830 1.01796 0.93336 0.99847 1.22865 0.97583 0.95732 0.93146 1.64850 1.48410 1.04839 1.05218 1.22548 0.99402 0.95702 0.89771 1.21264 0.96043 0.98987 0.93999 0.92678 1.21600 0.96024 1.00226 1.00239 1.19115 0.96784 0.94657 0.90394 1.21222 1.42468 0.99715 0.91746 0.92579 1.25010 0.95495 0.94938 0.99031 1.69964 1.47217 1.12908 1.23575 0.86634 0.78698 0.80303 0.82628 1.20662 1.21284 1.19896 1.23573 0.97812 0.93905 0.94440 1.22206 0.84505 0.99996 1.02483 0.92128 0.92338 0.92000 0.80253 0.90507 0.89739 0.93252 0.89754 0.94990 0.90656 0.92430 0.94170 0.94047 0.96498 0.97006 0.93082 0.88669 0.92958 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.37 36.01 0.37 -0.19 16 2 C -0.25 -2.67 6.10 -105.05 -0.64 -3.31 16 3 C 0.04 0.53 11.96 -17.37 -0.21 0.32 16 4 N -0.29 -4.11 12.57 30.62 0.39 -3.72 16 5 N -0.36 -4.56 3.63 -53.06 -0.19 -4.75 16 6 C 0.16 1.83 4.17 -66.07 -0.28 1.55 16 7 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 8 C -0.14 -1.31 6.53 -25.37 -0.17 -1.47 16 9 C 0.04 0.38 6.70 -2.75 -0.02 0.37 16 10 N -0.51 -7.15 4.90 -230.46 -1.13 -8.28 16 11 C 0.05 0.89 4.23 -3.82 -0.02 0.88 16 12 C -0.08 -1.71 2.16 -90.62 -0.20 -1.90 16 13 H 0.05 1.15 6.64 -51.93 -0.34 0.81 16 14 C -0.12 -2.39 8.91 37.16 0.33 -2.06 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 16 C -0.51 -14.41 8.34 -34.44 -0.29 -14.70 16 17 H 0.06 1.55 7.08 -52.49 -0.37 1.17 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.03 0.44 5.02 -1.90 -0.01 0.43 16 25 C 0.05 0.61 10.34 -17.22 -0.18 0.43 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.08 0.65 6.07 -51.93 -0.32 0.33 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.55 7.97 -51.93 -0.41 0.13 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.20 6.82 -51.93 -0.35 0.85 16 37 H 0.04 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 1.47 7.54 -51.93 -0.39 1.08 16 43 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 44 H 0.17 1.48 7.03 -52.49 -0.37 1.11 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -31.38 350.47 -9.02 -40.40 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.57 Total: -1.94 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.51 Total: -17.55 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.20 Total: -42.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.38 -9.02 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602678332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.786 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds