Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39863 * 126.04315 * 2 1 4 4 N 1.30835 * 108.20088 * 180.02562 * 3 2 1 5 5 N 1.40074 * 108.20976 * 359.97438 * 4 3 2 6 6 C 1.46505 * 126.04047 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.64037 * 23.33251 * 6 5 4 8 8 C 1.54596 * 110.72441 * 146.47631 * 6 5 4 9 9 C 1.53995 * 105.13824 * 140.31740 * 8 6 5 10 10 N 1.47901 * 107.05812 * 1.22823 * 9 8 6 11 11 C 1.46901 * 110.99937 * 214.15583 * 10 9 8 12 12 C 1.52999 * 109.46783 * 175.84010 * 11 10 9 13 13 H 1.09004 * 109.47309 * 305.04646 * 12 11 10 14 14 C 1.52997 * 109.47434 * 65.05548 * 12 11 10 15 15 C 1.53004 * 109.46632 * 185.05297 * 12 11 10 16 16 C 1.50708 * 109.46914 * 174.99995 * 15 12 11 17 17 H 1.07995 * 119.99843 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99729 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99695 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47571 * 89.99679 * 20 18 16 22 22 H 1.48502 * 109.47173 * 209.99715 * 20 18 16 23 23 H 1.48504 * 109.47124 * 329.99807 * 20 18 16 24 24 C 1.48537 * 105.81925 * 334.66830 * 10 9 8 25 25 C 1.34947 * 107.92642 * 0.26282 * 5 4 3 26 26 H 1.08995 * 109.47362 * 89.97459 * 1 2 3 27 27 H 1.09004 * 109.46743 * 209.97532 * 1 2 3 28 28 H 1.09004 * 109.46472 * 329.97094 * 1 2 3 29 29 H 1.07997 * 125.89446 * 0.02562 * 3 2 1 30 30 H 1.09003 * 110.30710 * 21.40786 * 8 6 5 31 31 H 1.08996 * 110.39520 * 259.27565 * 8 6 5 32 32 H 1.08996 * 109.92130 * 241.87447 * 9 8 6 33 33 H 1.08997 * 110.07913 * 120.67213 * 9 8 6 34 34 H 1.08991 * 109.47424 * 55.84133 * 11 10 9 35 35 H 1.08998 * 109.46639 * 295.83342 * 11 10 9 36 36 H 1.09001 * 109.47135 * 175.09414 * 14 12 11 37 37 H 1.09005 * 109.47065 * 295.09086 * 14 12 11 38 38 H 1.08995 * 109.47458 * 55.08946 * 14 12 11 39 39 H 1.09001 * 109.47019 * 294.99475 * 15 12 11 40 40 H 1.08998 * 109.47268 * 55.00349 * 15 12 11 41 41 H 0.97003 * 119.99513 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.66689 * 157.64171 * 24 10 9 43 43 H 1.08997 * 110.66735 * 280.77106 * 24 10 9 44 44 H 1.07997 * 126.12948 * 179.73258 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7300 -0.0006 5 7 3.5844 -0.6707 -0.0003 6 6 4.7746 -1.5250 -0.0013 7 1 5.6333 -0.9882 0.4018 8 6 4.5168 -2.8232 0.7977 9 6 5.2091 -3.9367 -0.0099 10 7 5.8458 -3.2927 -1.1793 11 6 5.8118 -4.1779 -2.3511 12 6 6.3839 -3.4409 -3.5637 13 1 5.8431 -2.5056 -3.7088 14 6 7.8655 -3.1419 -3.3266 15 6 6.2332 -4.3157 -4.8099 16 6 6.6833 -3.5434 -6.0232 17 1 7.0407 -2.5299 -5.9162 18 6 6.6379 -4.1304 -7.2700 19 7 6.2023 -5.3644 -7.4003 20 14 7.1952 -3.1728 -8.7739 21 1 8.6464 -3.3979 -8.9945 22 1 6.4362 -3.6345 -9.9639 23 1 6.9459 -1.7247 -8.5591 24 6 5.0716 -2.0498 -1.4285 25 6 2.3032 -1.0943 -0.0055 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3632 0.8898 0.5143 29 1 1.9952 2.1576 0.0004 30 1 3.4466 -3.0172 0.8691 31 1 4.9547 -2.7498 1.7931 32 1 4.4717 -4.6666 -0.3438 33 1 5.9662 -4.4272 0.6018 34 1 4.7820 -4.4700 -2.5561 35 1 6.4091 -5.0676 -2.1517 36 1 8.2942 -2.6955 -4.2238 37 1 7.9672 -2.4486 -2.4916 38 1 8.3907 -4.0686 -3.0953 39 1 6.8454 -5.2110 -4.7015 40 1 5.1883 -4.6021 -4.9286 41 1 6.1708 -5.7774 -8.2774 42 1 5.6697 -1.3294 -1.9865 43 1 4.1449 -2.2732 -1.9569 44 1 1.9724 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602678332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 48.522931 kcal Electronic energy + Delta-G solvation = -21589.917333 eV Core-core repulsion = 18542.528950 eV Total energy + Delta-G solvation = -3047.388384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29914 -40.15180 -37.14160 -34.86825 -33.81319 -32.60143 -30.99765 -29.78919 -28.77720 -27.37074 -26.61514 -24.81477 -23.36424 -22.17977 -21.48406 -20.98822 -20.28769 -18.61641 -17.94701 -17.12467 -16.52850 -16.22604 -15.91383 -15.61112 -15.15294 -15.01108 -14.55945 -14.36196 -14.26592 -14.06210 -13.83569 -13.68017 -13.34858 -13.26296 -12.85265 -12.73649 -12.72503 -12.59020 -12.50422 -12.49303 -12.23599 -12.04322 -11.75949 -11.50066 -11.46190 -11.12407 -10.94374 -10.55872 -10.40030 -9.47635 -9.24743 -8.20381 -6.29293 0.92159 1.37920 1.38551 1.46769 1.49533 1.87042 2.39480 2.99580 3.13116 3.33071 3.44433 3.81893 3.90393 3.92657 4.07820 4.15020 4.20654 4.26311 4.46035 4.47324 4.56922 4.59659 4.67664 4.77474 4.83517 4.86140 4.87972 4.93582 4.96587 4.99989 5.07540 5.23907 5.26282 5.31849 5.39992 5.46934 5.50888 5.70654 5.78164 5.84771 5.87059 5.93554 6.14214 6.28051 6.76179 6.85936 7.38957 8.91597 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.003763 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.861027 B = 7438.533040 C = 8183.469927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.253 4.253 3 C 0.040 3.960 4 N -0.335 5.335 5 N -0.368 5.368 6 C 0.160 3.840 7 H 0.114 0.886 8 C -0.126 4.126 9 C 0.034 3.966 10 N -0.511 5.511 11 C 0.066 3.934 12 C -0.075 4.075 13 H 0.045 0.955 14 C -0.113 4.113 15 C 0.035 3.965 16 C -0.531 4.531 17 H 0.057 0.943 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.958 3.042 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.267 1.267 24 C 0.034 3.966 25 C 0.046 3.954 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.204 0.796 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.043 0.957 39 H -0.006 1.006 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 7.095 19.751 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.264 4.264 3 C -0.146 4.146 4 N -0.155 5.155 5 N -0.151 5.151 6 C 0.058 3.942 7 H 0.132 0.868 8 C -0.165 4.165 9 C -0.094 4.094 10 N -0.235 5.235 11 C -0.062 4.062 12 C -0.094 4.094 13 H 0.063 0.937 14 C -0.171 4.171 15 C -0.003 4.003 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.783 3.217 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.095 4.095 25 C -0.100 4.100 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.221 0.779 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.008 7.340 19.739 22.195 hybrid contribution -1.319 -0.316 -1.591 2.091 sum -8.327 7.024 18.148 21.167 Atomic orbital electron populations 1.20088 0.87413 1.03188 1.01942 1.20539 0.98500 0.91442 1.15910 1.24304 0.89597 1.01250 0.99414 1.77304 1.22758 0.89855 1.25629 1.48679 1.05652 1.04164 1.56566 1.22171 0.85602 0.90437 0.96040 0.86833 1.22798 1.02688 0.90963 1.00009 1.22982 0.98209 0.96223 0.91939 1.64780 1.49239 1.04563 1.04902 1.22256 0.98718 0.95682 0.89565 1.21056 0.97112 0.97762 0.93487 0.93652 1.21486 0.94879 1.00674 1.00037 1.18988 0.94366 0.94474 0.92468 1.21611 1.42343 0.99979 0.92979 0.92513 1.25902 0.95521 0.95903 1.02342 1.70087 1.48289 1.14514 1.24486 0.85549 0.78518 0.79026 0.78599 1.19716 1.20718 1.19117 1.23449 0.96614 0.93552 0.95863 1.22693 0.84066 1.01284 1.01954 0.92105 0.91133 0.90678 0.77937 0.89157 0.87654 0.92831 0.88135 0.95621 0.90300 0.94473 0.92013 0.93744 0.98723 0.99668 0.92860 0.90848 0.94419 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.37 71.24 0.74 -0.20 16 2 C -0.25 -5.08 6.10 -20.14 -0.12 -5.20 16 3 C 0.04 0.89 11.96 85.23 1.02 1.91 16 4 N -0.33 -9.26 12.57 -57.03 -0.72 -9.97 16 5 N -0.37 -9.03 3.63 -321.78 -1.17 -10.20 16 6 C 0.16 3.59 4.17 46.19 0.19 3.78 16 7 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 8 C -0.13 -2.02 6.53 31.47 0.21 -1.82 16 9 C 0.03 0.66 6.70 86.45 0.58 1.24 16 10 N -0.51 -13.80 4.90 -883.05 -4.33 -18.12 16 11 C 0.07 2.20 4.23 86.30 0.36 2.57 16 12 C -0.08 -3.12 2.16 -10.79 -0.02 -3.14 16 13 H 0.05 1.95 6.64 -2.38 -0.02 1.94 16 14 C -0.11 -4.38 8.91 71.98 0.64 -3.74 16 15 C 0.03 1.83 4.45 29.85 0.13 1.96 16 16 C -0.53 -30.47 8.34 25.60 0.21 -30.26 16 17 H 0.06 3.18 7.08 -2.91 -0.02 3.16 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 20 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C 0.03 0.96 5.02 86.65 0.44 1.39 16 25 C 0.05 0.95 10.34 83.54 0.86 1.81 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.09 1.24 6.07 -2.39 -0.01 1.23 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.03 7.67 -2.39 -0.02 1.01 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.03 0.88 7.97 -2.39 -0.02 0.86 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.04 1.56 6.82 -2.39 -0.02 1.54 16 37 H 0.06 2.10 7.89 -2.38 -0.02 2.08 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.07 2.33 7.54 -2.39 -0.02 2.31 16 43 H 0.04 1.15 8.01 -2.39 -0.02 1.13 16 44 H 0.19 2.90 7.03 -2.91 -0.02 2.88 16 Total: -1.00 -68.72 350.47 2.76 -65.96 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.95 Total: 11.32 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 5.70 Total: -29.18 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -5.92 Total: -95.17 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.72 2.76 -65.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602678332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.484 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds