Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47518 * 2 1 4 4 C 1.53003 * 109.47120 * 119.99777 * 2 1 3 5 5 C 1.50694 * 109.47179 * 295.00080 * 4 2 1 6 6 H 1.08005 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00059 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46994 * 89.99758 * 9 7 5 11 11 H 1.48495 * 109.46763 * 209.99964 * 9 7 5 12 12 H 1.48502 * 109.47094 * 329.99563 * 9 7 5 13 13 C 1.53002 * 109.47133 * 239.99823 * 2 1 3 14 14 N 1.46898 * 109.47133 * 71.47872 * 13 2 1 15 15 C 1.46904 * 110.99911 * 285.53473 * 14 13 2 16 16 C 1.46902 * 110.99989 * 161.58518 * 14 13 2 17 17 H 1.09003 * 109.47213 * 62.84817 * 16 14 13 18 18 C 1.52996 * 109.46813 * 302.85373 * 16 14 13 19 19 O 1.42907 * 109.47333 * 295.21156 * 18 16 14 20 20 C 1.50694 * 109.46972 * 182.85654 * 16 14 13 21 21 C 1.38241 * 119.99901 * 220.00122 * 20 16 14 22 22 C 1.38232 * 120.00163 * 180.02562 * 21 20 16 23 23 C 1.38232 * 120.00070 * 359.95054 * 22 21 20 24 24 C 1.38241 * 119.99806 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00093 * 0.07761 * 24 23 22 26 26 H 1.09005 * 109.47061 * 35.05715 * 1 2 3 27 27 H 1.08995 * 109.47734 * 155.05538 * 1 2 3 28 28 H 1.09004 * 109.47168 * 275.06144 * 1 2 3 29 29 H 1.08999 * 109.46768 * 54.99813 * 4 2 1 30 30 H 1.08997 * 109.47247 * 174.99524 * 4 2 1 31 31 H 0.96998 * 120.00092 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47108 * 311.47724 * 13 2 1 33 33 H 1.09004 * 109.47040 * 191.47869 * 13 2 1 34 34 H 1.09007 * 109.47106 * 326.52332 * 15 14 13 35 35 H 1.09003 * 109.46812 * 86.51820 * 15 14 13 36 36 H 1.08999 * 109.47355 * 206.52545 * 15 14 13 37 37 H 1.08998 * 109.47820 * 55.21078 * 18 16 14 38 38 H 1.09005 * 109.47309 * 175.21236 * 18 16 14 39 39 H 0.96693 * 114.00277 * 180.02562 * 19 18 16 40 40 H 1.08001 * 119.99502 * 359.97168 * 21 20 16 41 41 H 1.08002 * 119.99640 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.00187 * 179.72903 * 23 22 21 43 43 H 1.08001 * 119.99541 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00075 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7284 8 7 1.6448 0.2774 4.7994 9 14 2.9627 -1.9888 3.9029 10 1 4.4160 -1.6852 3.8793 11 1 2.6144 -2.6429 5.1897 12 1 2.6288 -2.8995 2.7785 13 6 2.0399 -0.7213 -1.2492 14 7 1.7884 0.1118 -2.4327 15 6 0.3648 0.0953 -2.7951 16 6 2.6244 -0.3135 -3.5633 17 1 2.3636 -1.3339 -3.8443 18 6 4.0984 -0.2574 -3.1570 19 8 4.4692 1.0978 -2.8959 20 6 2.3907 0.6055 -4.7344 21 6 2.3206 0.0893 -6.0149 22 6 2.1068 0.9324 -7.0893 23 6 1.9621 2.2916 -6.8832 24 6 2.0307 2.8076 -5.6026 25 6 2.2456 1.9647 -4.5283 26 1 -0.3633 0.8413 -0.5903 27 1 -0.3634 -0.9317 -0.4334 28 1 -0.3634 0.0907 1.0237 29 1 1.6053 -1.7197 1.2952 30 1 3.1262 -0.7995 1.2056 31 1 1.8914 -0.0459 5.6800 32 1 1.5193 -1.6728 -1.3574 33 1 3.1106 -0.9018 -1.1529 34 1 -0.0584 -0.8815 -2.5611 35 1 -0.1626 0.8645 -2.2308 36 1 0.2593 0.2908 -3.8622 37 1 4.2508 -0.8553 -2.2585 38 1 4.7134 -0.6530 -3.9654 39 1 5.3930 1.2090 -2.6327 40 1 2.4337 -0.9726 -6.1759 41 1 2.0524 0.5290 -8.0897 42 1 1.7995 2.9508 -7.7230 43 1 1.9181 3.8696 -5.4417 44 1 2.2996 2.3679 -3.5279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602678967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = -17.413353 kcal Electronic energy + Delta-G solvation = -22091.405945 eV Core-core repulsion = 19008.865599 eV Total energy + Delta-G solvation = -3082.540347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87926 -37.90248 -36.27860 -34.45396 -32.31100 -31.16680 -30.74393 -28.94591 -27.41711 -26.78200 -23.91279 -23.15108 -22.56003 -21.69174 -19.83243 -19.06818 -17.44968 -16.74255 -16.61841 -16.04900 -15.43750 -15.10564 -14.71818 -14.17170 -13.95916 -13.58951 -13.47352 -13.18533 -13.07904 -12.81104 -12.56869 -12.36937 -12.29173 -12.02066 -11.77146 -11.44476 -11.34827 -10.97847 -10.81804 -10.72128 -10.39001 -10.31756 -9.91997 -9.70398 -9.55945 -9.33573 -9.03665 -8.86175 -8.63783 -8.48651 -8.01294 -5.98928 -3.95236 1.35758 1.49023 3.32377 3.39854 3.43149 3.78913 4.07202 4.32464 4.49006 4.68834 4.91461 5.00088 5.12008 5.19374 5.28035 5.34792 5.39028 5.43867 5.57890 5.59827 5.64130 5.71971 5.80781 5.81550 5.99374 6.05292 6.15364 6.15918 6.30269 6.44001 6.47318 6.56861 6.60628 6.73611 6.84673 7.03982 7.06710 7.19729 7.31371 7.35801 7.38886 7.61975 7.75686 7.86624 8.61696 9.07750 9.64112 11.14645 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.003897 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.671066 B = 7182.855245 C = 7417.735629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 H 0.073 0.927 4 C -0.008 4.008 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.053 3.947 14 N -0.520 5.520 15 C 0.019 3.981 16 C 0.121 3.879 17 H 0.054 0.946 18 C 0.084 3.916 19 O -0.549 6.549 20 C -0.070 4.070 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.063 4.063 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.372 0.628 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -0.766 -22.979 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.045 4.045 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.074 4.074 14 N -0.244 5.244 15 C -0.129 4.129 16 C 0.012 3.988 17 H 0.071 0.929 18 C 0.006 3.994 19 O -0.353 6.353 20 C -0.070 4.070 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.081 4.081 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.218 0.782 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.369 -0.196 -22.821 22.945 hybrid contribution 0.911 -1.889 0.135 2.101 sum 3.280 -2.085 -22.686 23.017 Atomic orbital electron populations 1.22046 0.96319 0.99007 1.02527 1.20948 0.95193 1.00209 0.92332 0.90885 1.19611 0.95361 0.96022 0.93548 1.21138 1.35173 1.09437 0.89045 0.90784 1.25031 0.95755 0.96859 0.95982 1.69917 1.47350 1.39264 0.97983 0.86812 0.80650 0.84597 0.77384 1.20430 1.21549 1.19167 1.22609 1.00765 0.93572 0.90431 1.62050 1.05075 1.53807 1.03467 1.22736 0.88735 1.00960 1.00447 1.20663 0.92886 0.95333 0.89871 0.92860 1.22255 0.93808 0.84636 0.98731 1.86608 1.32101 1.25408 1.91172 1.19603 0.99702 0.94721 0.92982 1.21002 1.01342 0.99401 0.92452 1.20975 1.01746 0.93768 0.98377 1.21104 1.00875 0.95284 0.97049 1.21235 1.01022 0.99834 0.92837 1.21152 0.94865 0.92488 0.99639 0.93858 0.94742 0.91113 0.96974 0.97364 0.92879 0.95387 0.91065 0.95185 0.90390 0.92637 0.92625 0.93927 0.78192 0.86767 0.86622 0.86682 0.86378 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 7.92 37.15 0.29 -2.39 16 2 C -0.07 -1.36 2.49 -90.62 -0.23 -1.58 16 3 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 4 C -0.01 -0.18 3.49 -27.88 -0.10 -0.28 16 5 C -0.51 -14.46 8.62 -34.44 -0.30 -14.76 16 6 H 0.07 2.27 7.57 -52.48 -0.40 1.87 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.01 16 13 C 0.05 0.88 4.46 -3.82 -0.02 0.86 16 14 N -0.52 -7.64 3.83 -236.28 -0.90 -8.54 16 15 C 0.02 0.26 8.08 60.07 0.49 0.75 16 16 C 0.12 1.54 2.10 -68.87 -0.14 1.39 16 17 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 18 C 0.08 0.99 6.44 37.16 0.24 1.23 16 19 O -0.55 -6.95 12.05 -35.23 -0.42 -7.38 16 20 C -0.07 -0.86 3.22 -104.62 -0.34 -1.20 16 21 C -0.12 -1.35 9.67 -39.58 -0.38 -1.74 16 22 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.06 -0.83 7.78 -39.59 -0.31 -1.13 16 26 H 0.04 0.74 5.88 -51.93 -0.31 0.43 16 27 H 0.03 0.59 6.96 -51.93 -0.36 0.23 16 28 H 0.07 1.53 6.65 -51.93 -0.35 1.19 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.19 7.53 -51.93 -0.39 -0.20 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.03 0.45 7.37 -51.93 -0.38 0.07 16 33 H 0.07 1.15 5.27 -51.93 -0.27 0.88 16 34 H 0.03 0.41 6.83 -51.93 -0.35 0.05 16 35 H 0.08 1.12 5.75 -51.93 -0.30 0.82 16 36 H 0.05 0.72 6.26 -51.93 -0.33 0.40 16 37 H 0.06 0.67 5.76 -51.93 -0.30 0.37 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.37 3.23 9.12 45.56 0.42 3.64 16 40 H 0.11 1.06 8.04 -52.49 -0.42 0.63 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.14 2.03 7.47 -52.49 -0.39 1.64 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -31.76 338.36 -8.41 -40.17 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.20 Total: 3.19 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.08 Total: -22.38 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.13 Total: -35.87 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.42 Total: -7.38 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.76 -8.41 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602678967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.756 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds