Wall clock time and date at job start Mon Mar 30 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47518 * 2 1 4 4 C 1.53003 * 109.47120 * 119.99777 * 2 1 3 5 5 C 1.50694 * 109.47179 * 295.00080 * 4 2 1 6 6 H 1.08005 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00059 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46994 * 89.99758 * 9 7 5 11 11 H 1.48495 * 109.46763 * 209.99964 * 9 7 5 12 12 H 1.48502 * 109.47094 * 329.99563 * 9 7 5 13 13 C 1.53002 * 109.47133 * 239.99823 * 2 1 3 14 14 N 1.46898 * 109.47133 * 71.47872 * 13 2 1 15 15 C 1.46904 * 110.99911 * 285.53473 * 14 13 2 16 16 C 1.46902 * 110.99989 * 161.58518 * 14 13 2 17 17 H 1.09003 * 109.47213 * 62.84817 * 16 14 13 18 18 C 1.52996 * 109.46813 * 302.85373 * 16 14 13 19 19 O 1.42907 * 109.47333 * 295.21156 * 18 16 14 20 20 C 1.50694 * 109.46972 * 182.85654 * 16 14 13 21 21 C 1.38241 * 119.99901 * 220.00122 * 20 16 14 22 22 C 1.38232 * 120.00163 * 180.02562 * 21 20 16 23 23 C 1.38232 * 120.00070 * 359.95054 * 22 21 20 24 24 C 1.38241 * 119.99806 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00093 * 0.07761 * 24 23 22 26 26 H 1.09005 * 109.47061 * 35.05715 * 1 2 3 27 27 H 1.08995 * 109.47734 * 155.05538 * 1 2 3 28 28 H 1.09004 * 109.47168 * 275.06144 * 1 2 3 29 29 H 1.08999 * 109.46768 * 54.99813 * 4 2 1 30 30 H 1.08997 * 109.47247 * 174.99524 * 4 2 1 31 31 H 0.96998 * 120.00092 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47108 * 311.47724 * 13 2 1 33 33 H 1.09004 * 109.47040 * 191.47869 * 13 2 1 34 34 H 1.09007 * 109.47106 * 326.52332 * 15 14 13 35 35 H 1.09003 * 109.46812 * 86.51820 * 15 14 13 36 36 H 1.08999 * 109.47355 * 206.52545 * 15 14 13 37 37 H 1.08998 * 109.47820 * 55.21078 * 18 16 14 38 38 H 1.09005 * 109.47309 * 175.21236 * 18 16 14 39 39 H 0.96693 * 114.00277 * 180.02562 * 19 18 16 40 40 H 1.08001 * 119.99502 * 359.97168 * 21 20 16 41 41 H 1.08002 * 119.99640 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.00187 * 179.72903 * 23 22 21 43 43 H 1.08001 * 119.99541 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00075 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7284 8 7 1.6448 0.2774 4.7994 9 14 2.9627 -1.9888 3.9029 10 1 4.4160 -1.6852 3.8793 11 1 2.6144 -2.6429 5.1897 12 1 2.6288 -2.8995 2.7785 13 6 2.0399 -0.7213 -1.2492 14 7 1.7884 0.1118 -2.4327 15 6 0.3648 0.0953 -2.7951 16 6 2.6244 -0.3135 -3.5633 17 1 2.3636 -1.3339 -3.8443 18 6 4.0984 -0.2574 -3.1570 19 8 4.4692 1.0978 -2.8959 20 6 2.3907 0.6055 -4.7344 21 6 2.3206 0.0893 -6.0149 22 6 2.1068 0.9324 -7.0893 23 6 1.9621 2.2916 -6.8832 24 6 2.0307 2.8076 -5.6026 25 6 2.2456 1.9647 -4.5283 26 1 -0.3633 0.8413 -0.5903 27 1 -0.3634 -0.9317 -0.4334 28 1 -0.3634 0.0907 1.0237 29 1 1.6053 -1.7197 1.2952 30 1 3.1262 -0.7995 1.2056 31 1 1.8914 -0.0459 5.6800 32 1 1.5193 -1.6728 -1.3574 33 1 3.1106 -0.9018 -1.1529 34 1 -0.0584 -0.8815 -2.5611 35 1 -0.1626 0.8645 -2.2308 36 1 0.2593 0.2908 -3.8622 37 1 4.2508 -0.8553 -2.2585 38 1 4.7134 -0.6530 -3.9654 39 1 5.3930 1.2090 -2.6327 40 1 2.4337 -0.9726 -6.1759 41 1 2.0524 0.5290 -8.0897 42 1 1.7995 2.9508 -7.7230 43 1 1.9181 3.8696 -5.4417 44 1 2.2996 2.3679 -3.5279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602678967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:05 Heat of formation + Delta-G solvation = -38.601497 kcal Electronic energy + Delta-G solvation = -22092.324732 eV Core-core repulsion = 19008.865599 eV Total energy + Delta-G solvation = -3083.459134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82688 -38.97727 -37.39726 -35.94296 -34.22211 -32.34242 -31.61443 -29.99047 -29.26328 -28.03394 -25.04385 -24.69113 -23.48332 -22.92291 -20.82580 -20.71982 -18.89280 -18.32318 -17.58708 -17.05494 -16.75302 -16.10541 -16.05772 -15.61085 -15.08864 -14.91996 -14.77388 -14.42625 -14.19436 -14.07135 -13.87302 -13.77026 -13.48397 -13.33234 -13.14999 -12.87814 -12.55268 -12.45176 -12.11545 -11.99754 -11.80092 -11.71305 -11.51668 -11.38790 -11.07251 -11.01234 -10.72473 -10.65601 -9.69588 -9.49651 -9.12645 -8.24412 -6.26522 0.52541 0.64887 1.36382 1.38467 1.50212 2.39029 2.85790 3.07498 3.10686 3.46453 3.80231 4.07749 4.11127 4.20575 4.26393 4.27499 4.40937 4.42857 4.44571 4.49889 4.63482 4.65892 4.67223 4.74758 4.84817 4.88681 4.93606 5.00215 5.05649 5.10950 5.19515 5.31547 5.35888 5.42203 5.60739 5.64879 5.74031 5.75906 5.76738 5.84065 6.19926 6.23640 6.29063 6.38346 6.80973 7.01976 7.36486 8.92666 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.003897 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.671066 B = 7182.855245 C = 7417.735629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 H 0.046 0.954 4 C -0.003 4.003 5 C -0.516 4.516 6 H 0.031 0.969 7 C -0.001 4.001 8 N -0.956 5.956 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.245 1.245 13 C 0.065 3.935 14 N -0.532 5.532 15 C 0.024 3.976 16 C 0.119 3.881 17 H 0.068 0.932 18 C 0.083 3.917 19 O -0.571 6.571 20 C -0.079 4.079 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.082 4.082 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.018 0.982 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.387 0.613 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -2.909 -25.863 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.049 0.951 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.169 1.169 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.124 4.124 16 C 0.011 3.989 17 H 0.086 0.914 18 C 0.005 3.995 19 O -0.377 6.377 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.160 4.160 25 C -0.100 4.100 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.235 0.765 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.320 -2.333 -25.732 26.050 hybrid contribution 0.574 -1.081 0.979 1.567 sum 3.894 -3.414 -24.754 25.290 Atomic orbital electron populations 1.21944 0.95706 1.00760 1.00585 1.20791 0.95697 0.98746 0.92922 0.93501 1.19540 0.95679 0.95739 0.93096 1.21437 1.34254 1.08459 0.91305 0.95082 1.26027 0.97102 1.01046 0.95461 1.70083 1.49254 1.41650 0.98712 0.85663 0.79171 0.79815 0.78005 1.19242 1.21271 1.16881 1.22342 1.01021 0.93399 0.89468 1.61903 1.05846 1.53882 1.03931 1.22656 0.88239 1.00719 1.00749 1.20772 0.92950 0.96060 0.89130 0.91439 1.22316 0.93683 0.84200 0.99327 1.86582 1.33603 1.26176 1.91355 1.19608 1.00457 0.94247 0.93587 1.21250 1.00793 1.00618 0.91892 1.21341 1.00394 0.93609 0.99463 1.21412 0.99956 0.96025 0.97100 1.21408 1.01143 1.00262 0.93197 1.21002 0.96781 0.93348 0.98878 0.92429 0.92676 0.94765 0.96416 0.96707 0.92721 0.94381 0.90483 0.94660 0.91656 0.91802 0.92932 0.91761 0.76523 0.84812 0.83988 0.84360 0.85612 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 7.92 71.98 0.57 -4.50 16 2 C -0.06 -2.50 2.49 -10.79 -0.03 -2.53 16 3 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.00 -0.13 3.49 29.85 0.10 -0.02 16 5 C -0.52 -30.23 8.62 25.60 0.22 -30.01 16 6 H 0.03 2.02 7.57 -2.91 -0.02 2.00 16 7 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 8 N -0.96 -61.18 13.96 21.45 0.30 -60.88 16 9 Si 0.95 44.76 27.47 68.60 1.88 46.65 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 13 C 0.07 2.04 4.46 86.30 0.38 2.43 16 14 N -0.53 -15.01 3.83 -901.44 -3.45 -18.46 16 15 C 0.02 0.63 8.08 127.69 1.03 1.66 16 16 C 0.12 2.78 2.10 44.17 0.09 2.87 16 17 H 0.07 1.39 8.00 -2.39 -0.02 1.37 16 18 C 0.08 1.79 6.44 71.98 0.46 2.25 16 19 O -0.57 -14.02 12.05 -148.98 -1.80 -15.82 16 20 C -0.08 -1.81 3.22 -19.87 -0.06 -1.87 16 21 C -0.13 -2.41 9.67 22.27 0.22 -2.19 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.14 -3.10 10.05 22.27 0.22 -2.88 16 25 C -0.08 -2.09 7.78 22.27 0.17 -1.92 16 26 H 0.06 2.00 5.88 -2.38 -0.01 1.99 16 27 H 0.05 1.84 6.96 -2.39 -0.02 1.82 16 28 H 0.03 1.53 6.65 -2.38 -0.02 1.51 16 29 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 30 H 0.01 0.67 7.53 -2.39 -0.02 0.66 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.04 1.13 7.37 -2.38 -0.02 1.11 16 33 H 0.08 2.34 5.27 -2.39 -0.01 2.33 16 34 H 0.03 0.88 6.83 -2.38 -0.02 0.87 16 35 H 0.06 1.85 5.75 -2.39 -0.01 1.84 16 36 H 0.06 1.57 6.26 -2.39 -0.01 1.55 16 37 H 0.05 1.16 5.76 -2.39 -0.01 1.14 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.39 6.41 9.12 -74.06 -0.68 5.73 16 40 H 0.13 1.96 8.04 -2.91 -0.02 1.93 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 44 H 0.11 3.38 7.47 -2.91 -0.02 3.36 16 Total: -1.00 -70.34 338.36 1.49 -68.85 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.25 Total: 20.00 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 4.30 Total: -40.35 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.15 Total: -79.34 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.80 Total: -15.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -70.34 1.49 -68.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602678967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.250 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds