Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47601 * 2 1 4 4 C 1.52995 * 109.47627 * 239.99674 * 2 1 3 5 5 C 1.50699 * 109.47045 * 64.99624 * 4 2 1 6 6 H 1.08002 * 119.99843 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00248 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99927 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99978 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47044 * 89.99946 * 9 7 5 11 11 H 1.48508 * 109.46768 * 210.00007 * 9 7 5 12 12 H 1.48494 * 109.47109 * 329.99852 * 9 7 5 13 13 C 1.53007 * 109.47288 * 119.99568 * 2 1 3 14 14 N 1.46901 * 109.46773 * 295.00443 * 13 2 1 15 15 C 1.46897 * 110.99832 * 288.57858 * 14 13 2 16 16 C 1.46910 * 110.99605 * 164.63177 * 14 13 2 17 17 H 1.08991 * 109.47193 * 57.71551 * 16 14 13 18 18 C 1.53002 * 109.46729 * 297.71316 * 16 14 13 19 19 O 1.42895 * 109.47234 * 296.35586 * 18 16 14 20 20 C 1.50703 * 109.46873 * 177.71760 * 16 14 13 21 21 C 1.38240 * 119.99872 * 39.72257 * 20 16 14 22 22 C 1.38233 * 119.99538 * 179.78793 * 21 20 16 23 23 C 1.38239 * 120.00096 * 0.44056 * 22 21 20 24 24 C 1.38238 * 119.99979 * 359.81565 * 23 22 21 25 25 C 1.38234 * 120.00139 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47533 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47477 * 300.00371 * 1 2 3 28 28 H 1.09002 * 109.47307 * 60.00382 * 1 2 3 29 29 H 1.08991 * 109.47897 * 184.99961 * 4 2 1 30 30 H 1.09001 * 109.46958 * 305.00259 * 4 2 1 31 31 H 0.97001 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46785 * 54.99488 * 13 2 1 33 33 H 1.08998 * 109.47366 * 175.00043 * 13 2 1 34 34 H 1.09003 * 109.47161 * 60.00537 * 15 14 13 35 35 H 1.09005 * 109.47335 * 180.02562 * 15 14 13 36 36 H 1.09007 * 109.47464 * 300.00543 * 15 14 13 37 37 H 1.09000 * 109.46800 * 56.35902 * 18 16 14 38 38 H 1.09000 * 109.46780 * 176.35712 * 18 16 14 39 39 H 0.96696 * 114.00112 * 180.02562 * 19 18 16 40 40 H 1.07991 * 120.00217 * 0.02562 * 21 20 16 41 41 H 1.07993 * 120.00042 * 180.27345 * 22 21 20 42 42 H 1.07996 * 120.00028 * 179.82998 * 23 22 21 43 43 H 1.08001 * 119.99746 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00298 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3756 7 6 1.9924 -0.4024 -3.7283 8 7 2.6748 -1.5199 -3.8511 9 14 1.4988 0.5626 -5.2496 10 1 2.5648 1.5414 -5.5824 11 1 1.3111 -0.3714 -6.3889 12 1 0.2281 1.2848 -4.9870 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.4273 1.2799 2.5563 16 6 1.7927 -0.7811 3.6572 17 1 2.8222 -1.1286 3.7428 18 6 0.8532 -1.9857 3.5712 19 8 -0.5016 -1.5322 3.5446 20 6 1.4395 0.0461 4.8664 21 6 0.3770 0.9289 4.8136 22 6 0.0503 1.6844 5.9242 23 6 0.7918 1.5638 7.0847 24 6 1.8576 0.6849 7.1357 25 6 2.1816 -0.0739 6.0266 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2950 31 1 2.9221 -1.8429 -4.7317 32 1 1.6053 -1.7197 1.2953 33 1 3.1263 -0.7994 1.2057 34 1 2.2496 1.8989 1.6768 35 1 2.1199 1.8220 3.4506 36 1 3.4887 1.0406 2.6236 37 1 1.0661 -2.5482 2.6622 38 1 1.0046 -2.6272 4.4394 39 1 -1.1537 -2.2442 3.4908 40 1 -0.2002 1.0254 3.9060 41 1 -0.7824 2.3708 5.8844 42 1 0.5383 2.1560 7.9514 43 1 2.4371 0.5910 8.0422 44 1 3.0139 -0.7608 6.0666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602678969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -27.193408 kcal Electronic energy + Delta-G solvation = -22044.952799 eV Core-core repulsion = 18961.988358 eV Total energy + Delta-G solvation = -3082.964442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84148 -37.75719 -36.14828 -34.40272 -32.28584 -31.15223 -30.71745 -28.75161 -26.99982 -26.11424 -24.24784 -23.35061 -22.56265 -21.82346 -19.84490 -18.86725 -17.38284 -16.66236 -16.33875 -15.86775 -15.25650 -14.92981 -14.58253 -14.36781 -14.21535 -13.52509 -13.36710 -13.20267 -12.93902 -12.81801 -12.44973 -12.20384 -12.17037 -11.78697 -11.32335 -11.30460 -11.14879 -10.94911 -10.83102 -10.68272 -10.59808 -10.23406 -10.19975 -9.82803 -9.49662 -9.06728 -8.93676 -8.84364 -8.60309 -8.29780 -7.93657 -5.94978 -3.95535 1.37380 1.49222 3.34881 3.41074 3.44914 3.80450 4.12687 4.36890 4.51027 4.72089 4.93786 5.00993 5.17391 5.21866 5.37271 5.41082 5.45174 5.49129 5.62025 5.65273 5.72563 5.74507 5.87248 6.01139 6.03749 6.16503 6.19790 6.29077 6.45651 6.47473 6.59118 6.63900 6.73477 6.82508 7.06764 7.10645 7.23891 7.28348 7.42466 7.50630 7.73399 7.78480 7.90101 8.05840 8.50745 9.10961 9.67670 11.16654 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033449 B = 0.003602 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.890204 B = 7772.315367 C = 7903.303130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.057 3.943 14 N -0.519 5.519 15 C 0.021 3.979 16 C 0.121 3.879 17 H 0.055 0.945 18 C 0.088 3.912 19 O -0.549 6.549 20 C -0.069 4.069 21 C -0.066 4.066 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.122 4.122 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.014 0.986 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.371 0.629 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 1.463 21.200 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.127 4.127 16 C 0.013 3.987 17 H 0.072 0.928 18 C 0.010 3.990 19 O -0.352 6.352 20 C -0.070 4.070 21 C -0.084 4.084 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.141 4.141 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.216 0.784 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.060 2.054 21.048 21.368 hybrid contribution 0.554 -0.407 -0.850 1.093 sum -2.506 1.647 20.198 20.420 Atomic orbital electron populations 1.21529 0.95580 1.00328 1.00103 1.21164 0.96066 0.98971 0.93382 0.92715 1.19123 0.95775 0.95517 0.90600 1.21245 1.34405 1.08207 0.90969 0.92575 1.25018 0.95401 0.95085 0.99069 1.69965 1.39308 1.21240 1.23308 0.86639 0.78945 0.79816 0.82881 1.20793 1.21346 1.19864 1.22437 0.97348 0.97454 0.89782 1.62028 1.55911 1.05331 1.00990 1.22471 0.94688 0.92861 1.02681 1.20642 0.96392 0.92522 0.89191 0.92781 1.22182 0.83152 0.94330 0.99381 1.86602 1.14885 1.36431 1.97324 1.19647 0.96090 0.97230 0.94014 1.21146 0.95475 0.93368 0.98453 1.21219 1.00028 1.00269 0.93499 1.21098 0.96194 0.99044 0.98019 1.20984 0.98116 0.97519 0.98175 1.21009 0.99768 1.00058 0.93245 0.94488 0.93611 0.93138 0.97101 0.96730 0.93162 0.91199 0.95435 0.90722 0.91652 0.96276 0.92769 0.94005 0.78392 0.84494 0.86430 0.86700 0.86607 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.15 0.33 -2.02 16 2 C -0.08 -1.60 2.34 -90.62 -0.21 -1.81 16 3 H 0.05 1.17 6.56 -51.93 -0.34 0.83 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 0.99 4.23 -3.82 -0.02 0.97 16 14 N -0.52 -7.83 3.33 -236.27 -0.79 -8.62 16 15 C 0.02 0.31 8.93 60.06 0.54 0.84 16 16 C 0.12 1.59 2.11 -68.86 -0.15 1.44 16 17 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 18 C 0.09 1.05 6.50 37.16 0.24 1.29 16 19 O -0.55 -6.80 12.10 -35.23 -0.43 -7.23 16 20 C -0.07 -0.87 3.61 -104.62 -0.38 -1.25 16 21 C -0.07 -0.86 6.94 -39.58 -0.27 -1.13 16 22 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 24 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.37 9.67 -39.58 -0.38 -1.76 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.20 5.69 -51.93 -0.30 0.91 16 33 H 0.03 0.49 8.04 -51.93 -0.42 0.08 16 34 H 0.07 1.15 6.59 -51.93 -0.34 0.81 16 35 H 0.06 0.90 5.80 -51.93 -0.30 0.60 16 36 H 0.02 0.27 8.11 -51.93 -0.42 -0.15 16 37 H 0.05 0.67 6.01 -51.93 -0.31 0.36 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.37 3.11 9.12 45.56 0.42 3.52 16 40 H 0.14 1.98 7.48 -52.49 -0.39 1.59 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.11 1.11 8.04 -52.49 -0.42 0.68 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -31.29 347.48 -8.74 -40.03 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.47 Total: 1.51 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.00 Total: -21.37 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.05 Total: -35.04 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.43 Total: -7.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.29 -8.74 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602678969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.837 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds