Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47768 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46740 * 64.99955 * 4 3 2 6 6 C 1.46497 * 120.00197 * 90.00367 * 5 4 3 7 7 C 1.53000 * 109.46926 * 89.99637 * 6 5 4 8 8 H 1.09002 * 109.47398 * 305.00364 * 7 6 5 9 9 C 1.53002 * 109.47233 * 65.00537 * 7 6 5 10 10 C 1.52997 * 109.47060 * 185.00195 * 7 6 5 11 11 C 1.50698 * 109.47721 * 175.00208 * 10 7 6 12 12 H 1.08008 * 119.99163 * 0.02562 * 11 10 7 13 13 C 1.37869 * 120.00614 * 180.02562 * 11 10 7 14 14 N 1.31514 * 120.00228 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99783 * 359.97438 * 13 11 10 16 16 H 1.48489 * 109.47262 * 90.00178 * 15 13 11 17 17 H 1.48509 * 109.46916 * 210.00229 * 15 13 11 18 18 H 1.48493 * 109.47108 * 329.99715 * 15 13 11 19 19 C 1.39681 * 119.99926 * 270.00354 * 5 4 3 20 20 C 1.38914 * 120.07216 * 179.72615 * 19 5 4 21 21 C 1.38105 * 119.92200 * 179.76757 * 20 19 5 22 22 C 1.38294 * 120.07391 * 0.50775 * 21 20 19 23 23 C 1.38286 * 120.14910 * 359.74052 * 22 21 20 24 24 C 1.38102 * 120.07443 * 0.02562 * 23 22 21 25 25 H 1.09009 * 109.46843 * 299.99904 * 1 2 3 26 26 H 1.08998 * 109.47242 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47002 * 59.99893 * 3 2 1 29 29 H 1.09001 * 109.46923 * 300.00491 * 3 2 1 30 30 H 1.09007 * 109.46930 * 305.00515 * 4 3 2 31 31 H 1.09000 * 109.47703 * 185.00085 * 4 3 2 32 32 H 1.09002 * 109.46761 * 330.00043 * 6 5 4 33 33 H 1.08991 * 109.47193 * 210.00177 * 6 5 4 34 34 H 1.09002 * 109.47075 * 59.99068 * 9 7 6 35 35 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.46986 * 299.99797 * 9 7 6 37 37 H 1.09000 * 109.47325 * 295.00173 * 10 7 6 38 38 H 1.09008 * 109.47017 * 55.00082 * 10 7 6 39 39 H 0.96997 * 120.00333 * 180.02562 * 14 13 11 40 40 H 1.07992 * 120.03584 * 0.02562 * 20 19 5 41 41 H 1.07998 * 119.96315 * 180.25040 * 21 20 19 42 42 H 1.07997 * 119.92360 * 179.72275 * 22 21 20 43 43 H 1.07995 * 119.96139 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.03408 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2883 1.3997 -2.4130 7 6 5.7684 1.7860 -2.3812 8 1 5.9991 2.2627 -1.4286 9 6 6.6268 0.5300 -2.5442 10 6 6.0662 2.7589 -3.5238 11 6 7.4924 3.2346 -3.4198 12 1 8.1234 2.8781 -2.6190 13 6 7.9916 4.1247 -4.3468 14 7 9.2364 4.5393 -4.2563 15 14 6.9004 4.7406 -5.7322 16 1 6.1956 5.9729 -5.2966 17 1 7.7350 5.0423 -6.9229 18 1 5.9032 3.6962 -6.0785 19 6 4.1001 -0.8248 -1.3362 20 6 4.5129 -1.4153 -2.5239 21 6 4.6386 -2.7883 -2.6033 22 6 4.3440 -3.5758 -1.5053 23 6 3.9279 -2.9915 -0.3230 24 6 3.8047 -1.6188 -0.2353 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1765 0.0902 32 1 3.6767 2.3017 -2.3863 33 1 4.0771 0.8446 -3.3269 34 1 6.3960 0.0532 -3.4968 35 1 7.6813 0.8050 -2.5211 36 1 6.4147 -0.1632 -1.7302 37 1 5.9204 2.2537 -4.4786 38 1 5.3925 3.6134 -3.4583 39 1 9.5875 5.1659 -4.9082 40 1 4.7392 -0.8011 -3.3828 41 1 4.9633 -3.2478 -3.5251 42 1 4.4388 -4.6496 -1.5715 43 1 3.6983 -3.6094 0.5324 44 1 3.4793 -1.1632 0.6882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602683127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = -18.925223 kcal Electronic energy + Delta-G solvation = -22184.310843 eV Core-core repulsion = 19101.704937 eV Total energy + Delta-G solvation = -3082.605906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66732 -37.86767 -36.63723 -34.43048 -32.21576 -30.88997 -30.24839 -28.78030 -27.40356 -26.43684 -25.35607 -23.41687 -22.58463 -21.52758 -20.25970 -18.96635 -17.64157 -16.74395 -16.56535 -16.02215 -15.35774 -15.21381 -14.92718 -14.41881 -14.12986 -13.94126 -13.59999 -13.33824 -13.07090 -12.78405 -12.49588 -12.20909 -12.15640 -11.97492 -11.66486 -11.55369 -11.20153 -11.17236 -10.95861 -10.72060 -10.62452 -10.44137 -9.92308 -9.78501 -9.73671 -9.60043 -9.36443 -9.04578 -8.53074 -8.52324 -6.88928 -6.02956 -4.00191 1.80986 1.97773 3.29559 3.36484 3.38050 3.40644 3.72541 4.26628 4.45328 4.96288 4.98489 5.11878 5.16736 5.24157 5.28852 5.30412 5.31252 5.39174 5.47080 5.54694 5.56259 5.72306 5.77437 5.81372 5.91813 5.97247 6.06725 6.22494 6.28066 6.40822 6.52650 6.64379 6.79545 6.86185 6.96708 6.98278 7.05552 7.13022 7.20700 7.25462 7.43910 7.63261 7.80737 7.88225 8.56327 9.02767 9.59638 11.10518 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.004735 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.879242 B = 5911.939195 C = 6782.800785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.125 3.875 5 N -0.619 5.619 6 C 0.123 3.877 7 C -0.093 4.093 8 H 0.062 0.938 9 C -0.131 4.131 10 C -0.008 4.008 11 C -0.512 4.512 12 H 0.073 0.927 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.233 3.767 20 C -0.192 4.192 21 C -0.082 4.082 22 C -0.189 4.189 23 C -0.084 4.084 24 C -0.180 4.180 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.016 0.984 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 -10.916 8.362 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.039 4.039 4 C 0.001 3.999 5 N -0.328 5.328 6 C 0.000 4.000 7 C -0.112 4.112 8 H 0.080 0.920 9 C -0.189 4.189 10 C -0.046 4.046 11 C -0.550 4.550 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.544 5.544 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C 0.131 3.869 20 C -0.214 4.214 21 C -0.101 4.101 22 C -0.209 4.209 23 C -0.102 4.102 24 C -0.202 4.202 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.193 -10.765 8.279 21.134 hybrid contribution -0.699 0.813 -0.815 1.347 sum -16.892 -9.952 7.464 20.979 Atomic orbital electron populations 1.22687 0.81903 1.02398 0.99453 1.88019 1.18866 1.27243 1.95264 1.23177 0.95331 0.85279 1.00081 1.21437 0.91197 0.99501 0.87783 1.46539 1.71656 1.02487 1.12070 1.21736 0.97039 0.93614 0.87583 1.21454 0.92272 0.96919 1.00586 0.91986 1.21854 1.00949 0.96412 0.99641 1.19590 0.97579 0.93749 0.93643 1.21108 0.95372 1.25552 1.13001 0.90910 1.25024 0.94836 0.96056 0.97612 1.69912 1.14514 1.33328 1.36642 0.86816 0.80933 0.79478 0.82253 1.20441 1.21470 1.19059 1.17728 0.92547 0.83130 0.93524 1.20906 1.07769 0.95109 0.97628 1.20807 0.98076 0.93173 0.98005 1.20766 1.06956 0.98970 0.94194 1.20761 0.98145 0.94178 0.97159 1.20600 1.07968 0.93401 0.98240 0.94548 0.94478 0.89946 0.92993 0.93207 0.90108 0.89031 0.91612 0.91190 0.93776 0.92068 0.94000 0.96613 0.97288 0.92818 0.85658 0.86875 0.87362 0.87145 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.46 8.52 -35.23 -0.30 -4.76 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.12 1.48 5.72 -4.04 -0.02 1.46 16 5 N -0.62 -8.90 2.44 -171.75 -0.42 -9.32 16 6 C 0.12 1.93 4.95 -4.04 -0.02 1.91 16 7 C -0.09 -1.77 2.54 -90.62 -0.23 -2.00 16 8 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 9 C -0.13 -2.52 7.45 37.16 0.28 -2.24 16 10 C -0.01 -0.18 3.52 -27.89 -0.10 -0.28 16 11 C -0.51 -14.29 8.96 -34.44 -0.31 -14.60 16 12 H 0.07 2.20 7.30 -52.48 -0.38 1.82 16 13 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 15 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.23 3.50 5.12 -83.78 -0.43 3.08 16 20 C -0.19 -2.93 7.16 -39.38 -0.28 -3.21 16 21 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 22 C -0.19 -2.48 10.04 -39.54 -0.40 -2.87 16 23 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 24 C -0.18 -2.53 8.06 -39.38 -0.32 -2.84 16 25 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.93 6.20 -51.92 -0.32 0.60 16 31 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.07 1.11 6.19 -51.93 -0.32 0.79 16 34 H 0.04 0.81 6.67 -51.93 -0.35 0.47 16 35 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 36 H 0.04 0.75 5.86 -51.93 -0.30 0.45 16 37 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.13 1.96 4.42 -52.49 -0.23 1.73 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.58 5.52 -52.49 -0.29 1.29 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -31.02 340.86 -7.99 -39.01 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.14 Total: 0.87 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.38 Total: -20.77 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.35 Total: -36.36 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.30 Total: -4.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.02 -7.99 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602683127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.088 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds