Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47768 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46740 * 64.99955 * 4 3 2 6 6 C 1.46497 * 120.00197 * 90.00367 * 5 4 3 7 7 C 1.53000 * 109.46926 * 89.99637 * 6 5 4 8 8 H 1.09002 * 109.47398 * 305.00364 * 7 6 5 9 9 C 1.53002 * 109.47233 * 65.00537 * 7 6 5 10 10 C 1.52997 * 109.47060 * 185.00195 * 7 6 5 11 11 C 1.50698 * 109.47721 * 175.00208 * 10 7 6 12 12 H 1.08008 * 119.99163 * 0.02562 * 11 10 7 13 13 C 1.37869 * 120.00614 * 180.02562 * 11 10 7 14 14 N 1.31514 * 120.00228 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99783 * 359.97438 * 13 11 10 16 16 H 1.48489 * 109.47262 * 90.00178 * 15 13 11 17 17 H 1.48509 * 109.46916 * 210.00229 * 15 13 11 18 18 H 1.48493 * 109.47108 * 329.99715 * 15 13 11 19 19 C 1.39681 * 119.99926 * 270.00354 * 5 4 3 20 20 C 1.38914 * 120.07216 * 179.72615 * 19 5 4 21 21 C 1.38105 * 119.92200 * 179.76757 * 20 19 5 22 22 C 1.38294 * 120.07391 * 0.50775 * 21 20 19 23 23 C 1.38286 * 120.14910 * 359.74052 * 22 21 20 24 24 C 1.38102 * 120.07443 * 0.02562 * 23 22 21 25 25 H 1.09009 * 109.46843 * 299.99904 * 1 2 3 26 26 H 1.08998 * 109.47242 * 59.99904 * 1 2 3 27 27 H 1.09001 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47002 * 59.99893 * 3 2 1 29 29 H 1.09001 * 109.46923 * 300.00491 * 3 2 1 30 30 H 1.09007 * 109.46930 * 305.00515 * 4 3 2 31 31 H 1.09000 * 109.47703 * 185.00085 * 4 3 2 32 32 H 1.09002 * 109.46761 * 330.00043 * 6 5 4 33 33 H 1.08991 * 109.47193 * 210.00177 * 6 5 4 34 34 H 1.09002 * 109.47075 * 59.99068 * 9 7 6 35 35 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.46986 * 299.99797 * 9 7 6 37 37 H 1.09000 * 109.47325 * 295.00173 * 10 7 6 38 38 H 1.09008 * 109.47017 * 55.00082 * 10 7 6 39 39 H 0.96997 * 120.00333 * 180.02562 * 14 13 11 40 40 H 1.07992 * 120.03584 * 0.02562 * 20 19 5 41 41 H 1.07998 * 119.96315 * 180.25040 * 21 20 19 42 42 H 1.07997 * 119.92360 * 179.72275 * 22 21 20 43 43 H 1.07995 * 119.96139 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.03408 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2883 1.3997 -2.4130 7 6 5.7684 1.7860 -2.3812 8 1 5.9991 2.2627 -1.4286 9 6 6.6268 0.5300 -2.5442 10 6 6.0662 2.7589 -3.5238 11 6 7.4924 3.2346 -3.4198 12 1 8.1234 2.8781 -2.6190 13 6 7.9916 4.1247 -4.3468 14 7 9.2364 4.5393 -4.2563 15 14 6.9004 4.7406 -5.7322 16 1 6.1956 5.9729 -5.2966 17 1 7.7350 5.0423 -6.9229 18 1 5.9032 3.6962 -6.0785 19 6 4.1001 -0.8248 -1.3362 20 6 4.5129 -1.4153 -2.5239 21 6 4.6386 -2.7883 -2.6033 22 6 4.3440 -3.5758 -1.5053 23 6 3.9279 -2.9915 -0.3230 24 6 3.8047 -1.6188 -0.2353 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1765 0.0902 32 1 3.6767 2.3017 -2.3863 33 1 4.0771 0.8446 -3.3269 34 1 6.3960 0.0532 -3.4968 35 1 7.6813 0.8050 -2.5211 36 1 6.4147 -0.1632 -1.7302 37 1 5.9204 2.2537 -4.4786 38 1 5.3925 3.6134 -3.4583 39 1 9.5875 5.1659 -4.9082 40 1 4.7392 -0.8011 -3.3828 41 1 4.9633 -3.2478 -3.5251 42 1 4.4388 -4.6496 -1.5715 43 1 3.6983 -3.6094 0.5324 44 1 3.4793 -1.1632 0.6882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602683127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -35.909500 kcal Electronic energy + Delta-G solvation = -22185.047337 eV Core-core repulsion = 19101.704937 eV Total energy + Delta-G solvation = -3083.342400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75300 -38.71005 -37.91110 -35.89714 -34.18939 -32.00403 -31.25173 -30.07616 -29.08960 -27.31387 -26.54390 -24.82742 -23.84227 -22.71072 -21.47854 -20.44868 -19.02911 -18.51069 -17.44031 -16.93033 -16.47122 -16.28296 -16.03395 -15.87597 -15.63707 -15.26035 -14.82758 -14.56507 -14.50859 -14.20259 -13.73809 -13.44126 -13.32324 -13.23361 -12.94306 -12.78597 -12.63875 -12.41706 -12.32926 -12.04882 -11.92166 -11.86256 -11.65759 -11.38341 -11.28290 -11.10453 -10.72759 -10.52651 -10.47737 -9.59179 -8.25154 -7.99043 -6.27713 0.74546 0.92138 1.36594 1.39205 1.50492 2.29701 2.38531 2.96731 3.10477 3.20483 3.96675 4.04614 4.11794 4.28963 4.32004 4.33954 4.38790 4.45360 4.51735 4.54434 4.59185 4.62528 4.71424 4.79145 4.80611 4.87785 4.89080 4.91622 4.99696 5.07335 5.09163 5.29588 5.32754 5.37611 5.50567 5.61794 5.67258 5.72405 5.80245 5.92267 6.17958 6.30036 6.34145 6.56472 6.77990 6.80490 7.35852 8.91932 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.004735 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.879242 B = 5911.939195 C = 6782.800785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.622 5.622 6 C 0.135 3.865 7 C -0.085 4.085 8 H 0.049 0.951 9 C -0.118 4.118 10 C -0.004 4.004 11 C -0.517 4.517 12 H 0.030 0.970 13 C 0.001 3.999 14 N -0.956 5.956 15 Si 0.948 3.052 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.245 1.245 19 C 0.218 3.782 20 C -0.212 4.212 21 C -0.091 4.091 22 C -0.192 4.192 23 C -0.087 4.087 24 C -0.185 4.185 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 -11.635 8.386 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.033 4.033 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.012 3.988 7 C -0.105 4.105 8 H 0.068 0.932 9 C -0.175 4.175 10 C -0.042 4.042 11 C -0.555 4.555 12 H 0.048 0.952 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.215 1.215 18 H -0.168 1.168 19 C 0.116 3.884 20 C -0.235 4.235 21 C -0.110 4.110 22 C -0.212 4.212 23 C -0.106 4.106 24 C -0.207 4.207 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.927 -11.503 8.329 23.663 hybrid contribution 0.204 0.945 -0.717 1.204 sum -18.723 -10.558 7.611 22.803 Atomic orbital electron populations 1.22805 0.80586 1.03092 1.00223 1.87977 1.20371 1.27890 1.95441 1.23114 0.94152 0.85120 1.00927 1.21608 0.92372 0.99601 0.86748 1.46535 1.71848 1.02276 1.12408 1.21455 0.94269 0.94551 0.88522 1.21333 0.95035 0.95717 0.98404 0.93228 1.21717 0.98637 0.96796 1.00395 1.19530 0.94490 0.94945 0.95249 1.21427 0.97433 1.25117 1.11566 0.95198 1.26005 0.96291 0.96429 1.00740 1.70080 1.16856 1.34609 1.38158 0.85686 0.79169 0.79643 0.78300 1.19101 1.21484 1.16818 1.17904 0.93079 0.83494 0.93883 1.20965 1.09077 0.95793 0.97623 1.21067 0.97911 0.92918 0.99068 1.21077 1.06115 1.00152 0.93837 1.21104 0.97295 0.94138 0.98020 1.20756 1.07921 0.93890 0.98176 0.93006 0.94431 0.89379 0.90787 0.93593 0.89818 0.88531 0.90080 0.91055 0.93181 0.95669 0.92983 0.96291 0.96033 0.92733 0.86601 0.85512 0.85158 0.84785 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -8.60 8.52 -148.98 -1.27 -9.87 16 3 C 0.04 0.85 6.28 71.98 0.45 1.30 16 4 C 0.12 2.65 5.72 86.38 0.49 3.14 16 5 N -0.62 -17.04 2.44 -697.29 -1.70 -18.74 16 6 C 0.14 4.06 4.95 86.38 0.43 4.49 16 7 C -0.08 -3.23 2.54 -10.79 -0.03 -3.26 16 8 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 9 C -0.12 -4.61 7.45 71.98 0.54 -4.08 16 10 C 0.00 -0.19 3.52 29.85 0.10 -0.09 16 11 C -0.52 -29.59 8.96 25.60 0.23 -29.36 16 12 H 0.03 1.91 7.30 -2.91 -0.02 1.89 16 13 C 0.00 0.08 5.47 84.65 0.46 0.54 16 14 N -0.96 -60.50 13.96 21.44 0.30 -60.20 16 15 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 18 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 19 C 0.22 6.30 5.12 38.21 0.20 6.49 16 20 C -0.21 -6.27 7.16 22.40 0.16 -6.11 16 21 C -0.09 -2.40 10.04 22.25 0.22 -2.18 16 22 C -0.19 -4.60 10.04 22.29 0.22 -4.38 16 23 C -0.09 -2.08 10.04 22.25 0.22 -1.85 16 24 C -0.19 -4.88 8.06 22.40 0.18 -4.70 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.79 6.20 -2.38 -0.01 1.77 16 31 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.07 2.15 6.19 -2.39 -0.01 2.13 16 34 H 0.05 1.86 6.67 -2.39 -0.02 1.84 16 35 H 0.02 1.12 6.95 -2.39 -0.02 1.10 16 36 H 0.05 1.90 5.86 -2.39 -0.01 1.88 16 37 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 38 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.12 3.56 4.42 -2.91 -0.01 3.55 16 41 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.13 3.09 5.52 -2.91 -0.02 3.07 16 Total: -1.00 -67.86 340.86 5.25 -62.61 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.91 Total: 18.61 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 5.13 Total: -38.33 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.40 Total: -78.95 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.27 Total: -9.87 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -67.86 5.25 -62.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602683127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.699 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds