Wall clock time and date at job start Mon Mar 30 2020 01:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.52995 * 109.46852 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47405 * 65.00361 * 4 3 2 6 6 C 1.46493 * 120.00481 * 89.99768 * 5 4 3 7 7 C 1.52998 * 109.47217 * 90.00096 * 6 5 4 8 8 H 1.08998 * 109.47104 * 55.00421 * 7 6 5 9 9 C 1.52998 * 109.47026 * 294.99617 * 7 6 5 10 10 C 1.53002 * 109.46886 * 174.99768 * 7 6 5 11 11 C 1.50706 * 109.47153 * 184.99546 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.39680 * 119.99550 * 269.99750 * 5 4 3 20 20 C 1.38905 * 120.07490 * 179.72142 * 19 5 4 21 21 C 1.38106 * 119.92489 * 179.76459 * 20 19 5 22 22 C 1.38285 * 120.07405 * 0.51762 * 21 20 19 23 23 C 1.38289 * 120.14977 * 359.73423 * 22 21 20 24 24 C 1.38105 * 120.07365 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46998 * 300.00023 * 1 2 3 26 26 H 1.08999 * 109.47603 * 59.99959 * 1 2 3 27 27 H 1.09003 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47384 * 59.99795 * 3 2 1 29 29 H 1.09007 * 109.46762 * 300.00162 * 3 2 1 30 30 H 1.08993 * 109.47288 * 304.99720 * 4 3 2 31 31 H 1.09004 * 109.46795 * 184.99486 * 4 3 2 32 32 H 1.09001 * 109.47299 * 329.99988 * 6 5 4 33 33 H 1.09002 * 109.47069 * 210.00155 * 6 5 4 34 34 H 1.09001 * 109.46970 * 60.00396 * 9 7 6 35 35 H 1.09003 * 109.46843 * 179.97438 * 9 7 6 36 36 H 1.08990 * 109.47503 * 300.00380 * 9 7 6 37 37 H 1.09004 * 109.47178 * 65.00336 * 10 7 6 38 38 H 1.08993 * 109.47411 * 305.00018 * 10 7 6 39 39 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 40 40 H 1.08004 * 120.04248 * 0.02562 * 20 19 5 41 41 H 1.08005 * 119.96662 * 180.24997 * 21 20 19 42 42 H 1.08004 * 119.92751 * 179.72007 * 22 21 20 43 43 H 1.08000 * 119.96103 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.03801 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4006 -2.4148 7 6 5.7665 1.7868 -2.3841 8 1 6.3760 0.8852 -2.3220 9 6 6.0377 2.6709 -1.1652 10 6 6.1198 2.5543 -3.6596 11 6 7.6016 2.8278 -3.6872 12 1 8.2285 2.4877 -2.8762 13 6 8.1568 3.5120 -4.7476 14 7 7.3941 3.9214 -5.7377 15 14 9.9936 3.8504 -4.7820 16 1 10.2691 5.1538 -4.1260 17 1 10.7096 2.7702 -4.0570 18 1 10.4622 3.8962 -6.1904 19 6 4.0991 -0.8243 -1.3385 20 6 4.5108 -1.4144 -2.5267 21 6 4.6366 -2.7874 -2.6066 22 6 4.3428 -3.5753 -1.5088 23 6 3.9276 -2.9914 -0.3259 24 6 3.8045 -1.6186 -0.2377 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0888 32 1 3.6749 2.3025 -2.3874 33 1 4.0745 0.8457 -3.3287 34 1 5.7859 2.1241 -0.2565 35 1 7.0923 2.9456 -1.1431 36 1 5.4282 3.5723 -1.2273 37 1 5.5757 3.4987 -3.6779 38 1 5.8439 1.9591 -4.5300 39 1 6.4403 3.7455 -5.7199 40 1 4.7365 -0.8000 -3.3858 41 1 4.9605 -3.2467 -3.5289 42 1 4.4376 -4.6491 -1.5753 43 1 3.6986 -3.6096 0.5295 44 1 3.4798 -1.1633 0.6862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602683129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:29 Heat of formation + Delta-G solvation = -28.396627 kcal Electronic energy + Delta-G solvation = -22096.073443 eV Core-core repulsion = 19013.056825 eV Total energy + Delta-G solvation = -3083.016617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58329 -37.86036 -36.74112 -34.46674 -32.21279 -31.01544 -30.23469 -28.50760 -26.70520 -26.45189 -25.44770 -23.16231 -22.81086 -21.65062 -20.35813 -19.30893 -17.45188 -16.81866 -16.52824 -15.99894 -15.38986 -15.18570 -14.98387 -14.35633 -14.04130 -13.74773 -13.68381 -13.39423 -12.99938 -12.79883 -12.48054 -12.22994 -12.08289 -11.86312 -11.62133 -11.33105 -11.26740 -11.12447 -11.01840 -10.71571 -10.62988 -10.45427 -10.10853 -9.85713 -9.76263 -9.57160 -9.36360 -8.55378 -8.50002 -8.30191 -6.90494 -6.32699 -4.01334 1.80685 1.97912 3.37393 3.44539 3.48507 3.64008 3.72927 4.26676 4.56516 4.96035 4.98646 5.11645 5.17801 5.24956 5.28837 5.31882 5.39385 5.43066 5.47828 5.54090 5.56324 5.72287 5.79695 5.82507 5.90710 5.92373 6.06740 6.14956 6.29604 6.37166 6.41474 6.63239 6.81538 6.86005 6.93966 6.96913 7.02087 7.05899 7.21638 7.38530 7.53180 7.66082 7.87828 8.25737 8.49936 8.92115 9.69845 11.07433 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.004480 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.611182 B = 6248.964653 C = 7097.913207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.039 3.961 4 C 0.121 3.879 5 N -0.617 5.617 6 C 0.125 3.875 7 C -0.095 4.095 8 H 0.062 0.938 9 C -0.131 4.131 10 C 0.016 3.984 11 C -0.593 4.593 12 H 0.049 0.951 13 C 0.014 3.986 14 N -0.916 5.916 15 Si 1.068 2.932 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.285 1.285 19 C 0.231 3.769 20 C -0.195 4.195 21 C -0.078 4.078 22 C -0.189 4.189 23 C -0.083 4.083 24 C -0.179 4.179 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -8.915 12.567 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.039 4.039 4 C -0.003 4.003 5 N -0.326 5.326 6 C 0.003 3.997 7 C -0.115 4.115 8 H 0.080 0.920 9 C -0.188 4.188 10 C -0.021 4.021 11 C -0.631 4.631 12 H 0.067 0.933 13 C -0.190 4.190 14 N -0.553 5.553 15 Si 0.897 3.103 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.211 1.211 19 C 0.129 3.871 20 C -0.217 4.217 21 C -0.097 4.097 22 C -0.210 4.210 23 C -0.102 4.102 24 C -0.202 4.202 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.872 -8.177 11.679 17.929 hybrid contribution -1.514 -0.363 0.866 1.782 sum -12.386 -8.540 12.545 19.589 Atomic orbital electron populations 1.22690 0.81898 1.02413 0.99460 1.88022 1.18882 1.27218 1.95261 1.23195 0.95382 0.85318 1.00045 1.21590 0.91192 0.99718 0.87774 1.46541 1.71642 1.02403 1.12035 1.21712 0.97059 0.93542 0.87404 1.21497 0.93453 0.99015 0.97548 0.91958 1.21761 1.02379 0.98260 0.96421 1.19218 0.97398 0.94177 0.91356 1.22035 0.92896 1.39640 1.08555 0.93266 1.25798 1.06528 0.93986 0.92646 1.70757 1.07278 1.44904 1.32317 0.83547 0.74563 0.76124 0.76037 1.21567 1.21509 1.21053 1.17769 0.92610 0.83191 0.93526 1.20792 1.08246 0.95197 0.97481 1.20823 0.97688 0.93143 0.98036 1.20774 1.07015 0.98999 0.94167 1.20771 0.98054 0.94166 0.97159 1.20597 1.07965 0.93400 0.98194 0.94556 0.94450 0.89929 0.93029 0.93216 0.90235 0.88672 0.91757 0.91172 0.94560 0.91993 0.94052 0.97593 0.97637 0.92177 0.85995 0.86768 0.87277 0.87085 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.62 8.52 -35.23 -0.30 -4.92 16 3 C 0.04 0.43 6.28 37.16 0.23 0.67 16 4 C 0.12 1.50 4.79 -4.04 -0.02 1.48 16 5 N -0.62 -9.33 2.41 -171.76 -0.41 -9.74 16 6 C 0.13 2.11 4.66 -4.05 -0.02 2.09 16 7 C -0.10 -1.92 2.54 -90.62 -0.23 -2.15 16 8 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 9 C -0.13 -2.42 7.99 37.16 0.30 -2.12 16 10 C 0.02 0.40 3.76 -27.88 -0.10 0.29 16 11 C -0.59 -16.64 8.41 -34.44 -0.29 -16.93 16 12 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 13 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 14 N -0.92 -28.01 13.65 55.43 0.76 -27.26 16 15 Si 1.07 25.53 29.90 -169.99 -5.08 20.44 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.23 3.68 6.30 -83.79 -0.53 3.15 16 20 C -0.19 -3.21 9.21 -39.38 -0.36 -3.57 16 21 C -0.08 -1.16 10.04 -39.61 -0.40 -1.55 16 22 C -0.19 -2.59 10.04 -39.55 -0.40 -2.98 16 23 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 24 C -0.18 -2.61 8.06 -39.38 -0.32 -2.93 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.08 0.94 6.20 -51.93 -0.32 0.62 16 31 H 0.10 1.12 5.98 -51.93 -0.31 0.81 16 32 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.07 1.22 6.19 -51.93 -0.32 0.90 16 34 H 0.04 0.57 5.89 -51.93 -0.31 0.27 16 35 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 38 H 0.01 0.14 8.00 -51.93 -0.42 -0.27 16 39 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 40 H 0.12 2.10 6.14 -52.48 -0.32 1.78 16 41 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.63 5.52 -52.49 -0.29 1.34 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -31.21 346.78 -8.50 -39.71 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.17 Total: 0.90 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.52 Total: -24.35 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.34 Total: -37.00 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.30 Total: -4.92 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -8.50 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602683129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds