Wall clock time and date at job start Mon Mar 30 2020 01:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.52995 * 109.46852 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47405 * 65.00361 * 4 3 2 6 6 C 1.46493 * 120.00481 * 89.99768 * 5 4 3 7 7 C 1.52998 * 109.47217 * 90.00096 * 6 5 4 8 8 H 1.08998 * 109.47104 * 55.00421 * 7 6 5 9 9 C 1.52998 * 109.47026 * 294.99617 * 7 6 5 10 10 C 1.53002 * 109.46886 * 174.99768 * 7 6 5 11 11 C 1.50706 * 109.47153 * 184.99546 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.39680 * 119.99550 * 269.99750 * 5 4 3 20 20 C 1.38905 * 120.07490 * 179.72142 * 19 5 4 21 21 C 1.38106 * 119.92489 * 179.76459 * 20 19 5 22 22 C 1.38285 * 120.07405 * 0.51762 * 21 20 19 23 23 C 1.38289 * 120.14977 * 359.73423 * 22 21 20 24 24 C 1.38105 * 120.07365 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46998 * 300.00023 * 1 2 3 26 26 H 1.08999 * 109.47603 * 59.99959 * 1 2 3 27 27 H 1.09003 * 109.47549 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47384 * 59.99795 * 3 2 1 29 29 H 1.09007 * 109.46762 * 300.00162 * 3 2 1 30 30 H 1.08993 * 109.47288 * 304.99720 * 4 3 2 31 31 H 1.09004 * 109.46795 * 184.99486 * 4 3 2 32 32 H 1.09001 * 109.47299 * 329.99988 * 6 5 4 33 33 H 1.09002 * 109.47069 * 210.00155 * 6 5 4 34 34 H 1.09001 * 109.46970 * 60.00396 * 9 7 6 35 35 H 1.09003 * 109.46843 * 179.97438 * 9 7 6 36 36 H 1.08990 * 109.47503 * 300.00380 * 9 7 6 37 37 H 1.09004 * 109.47178 * 65.00336 * 10 7 6 38 38 H 1.08993 * 109.47411 * 305.00018 * 10 7 6 39 39 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 40 40 H 1.08004 * 120.04248 * 0.02562 * 20 19 5 41 41 H 1.08005 * 119.96662 * 180.24997 * 21 20 19 42 42 H 1.08004 * 119.92751 * 179.72007 * 22 21 20 43 43 H 1.08000 * 119.96103 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.03801 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2864 1.4006 -2.4148 7 6 5.7665 1.7868 -2.3841 8 1 6.3760 0.8852 -2.3220 9 6 6.0377 2.6709 -1.1652 10 6 6.1198 2.5543 -3.6596 11 6 7.6016 2.8278 -3.6872 12 1 8.2285 2.4877 -2.8762 13 6 8.1568 3.5120 -4.7476 14 7 7.3941 3.9214 -5.7377 15 14 9.9936 3.8504 -4.7820 16 1 10.2691 5.1538 -4.1260 17 1 10.7096 2.7702 -4.0570 18 1 10.4622 3.8962 -6.1904 19 6 4.0991 -0.8243 -1.3385 20 6 4.5108 -1.4144 -2.5267 21 6 4.6366 -2.7874 -2.6066 22 6 4.3428 -3.5753 -1.5088 23 6 3.9276 -2.9914 -0.3259 24 6 3.8045 -1.6186 -0.2377 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0888 32 1 3.6749 2.3025 -2.3874 33 1 4.0745 0.8457 -3.3287 34 1 5.7859 2.1241 -0.2565 35 1 7.0923 2.9456 -1.1431 36 1 5.4282 3.5723 -1.2273 37 1 5.5757 3.4987 -3.6779 38 1 5.8439 1.9591 -4.5300 39 1 6.4403 3.7455 -5.7199 40 1 4.7365 -0.8000 -3.3858 41 1 4.9605 -3.2467 -3.5289 42 1 4.4376 -4.6491 -1.5753 43 1 3.6986 -3.6096 0.5295 44 1 3.4798 -1.1633 0.6862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602683129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:29 Heat of formation + Delta-G solvation = -44.717129 kcal Electronic energy + Delta-G solvation = -22096.781153 eV Core-core repulsion = 19013.056825 eV Total energy + Delta-G solvation = -3083.724327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73404 -38.77474 -38.09375 -36.09964 -34.11284 -32.10828 -31.30886 -29.79259 -28.40550 -27.58742 -26.60563 -24.99318 -23.95940 -22.84193 -21.66683 -20.80441 -18.88861 -18.57297 -17.49303 -16.94585 -16.49035 -16.37640 -16.04503 -15.75389 -15.62711 -15.37973 -15.00838 -14.72060 -14.20292 -14.11622 -13.71517 -13.64922 -13.33916 -13.19290 -13.02141 -12.74576 -12.72653 -12.49348 -12.31784 -12.18330 -11.96389 -11.90204 -11.71745 -11.55106 -11.24898 -10.84132 -10.55785 -10.52632 -10.43260 -9.69193 -8.66047 -8.07574 -6.34427 0.66495 0.85183 1.50870 1.59981 1.77440 2.21397 2.56653 2.92702 3.13175 3.18389 3.89545 3.96251 4.06500 4.20475 4.26204 4.27793 4.32737 4.37738 4.44888 4.48718 4.54943 4.56279 4.62317 4.72610 4.74021 4.79691 4.81559 4.85830 4.94435 5.00092 5.02387 5.18626 5.26051 5.29757 5.44633 5.52223 5.62218 5.72932 5.84907 6.04415 6.11727 6.22088 6.25899 6.47982 6.63164 6.70939 7.45492 8.75346 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.004480 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.611182 B = 6248.964653 C = 7097.913207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.043 3.957 4 C 0.117 3.883 5 N -0.619 5.619 6 C 0.140 3.860 7 C -0.083 4.083 8 H 0.040 0.960 9 C -0.122 4.122 10 C 0.020 3.980 11 C -0.604 4.604 12 H 0.047 0.953 13 C -0.039 4.039 14 N -0.941 5.941 15 Si 1.115 2.885 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.284 1.284 19 C 0.216 3.784 20 C -0.224 4.224 21 C -0.089 4.089 22 C -0.190 4.190 23 C -0.082 4.082 24 C -0.181 4.181 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.049 0.951 37 H -0.007 1.007 38 H -0.018 1.018 39 H 0.255 0.745 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -9.692 14.924 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.035 4.035 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.016 3.984 7 C -0.103 4.103 8 H 0.058 0.942 9 C -0.179 4.179 10 C -0.018 4.018 11 C -0.642 4.642 12 H 0.065 0.935 13 C -0.236 4.236 14 N -0.579 5.579 15 Si 0.937 3.063 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.209 1.209 19 C 0.114 3.886 20 C -0.246 4.246 21 C -0.107 4.107 22 C -0.210 4.210 23 C -0.101 4.101 24 C -0.203 4.203 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.011 0.989 38 H 0.000 1.000 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.198 -8.966 14.068 20.092 hybrid contribution -1.481 -0.205 0.151 1.503 sum -12.679 -9.171 14.218 21.143 Atomic orbital electron populations 1.22814 0.80548 1.03161 1.00217 1.87975 1.20423 1.27838 1.95438 1.23147 0.94305 0.85193 1.00882 1.21790 0.92327 0.99961 0.86538 1.46502 1.71883 1.02104 1.12297 1.21342 0.94741 0.94136 0.88153 1.21294 0.95485 0.97597 0.95923 0.94176 1.21670 1.00996 0.98582 0.96695 1.19130 0.95850 0.93733 0.93064 1.22412 0.94462 1.38996 1.08280 0.93509 1.27305 1.10531 0.93574 0.92227 1.70889 1.06815 1.46664 1.33515 0.82951 0.69659 0.77260 0.76408 1.19668 1.19786 1.20938 1.17955 0.93156 0.83639 0.93843 1.20825 1.10256 0.96045 0.97481 1.21056 0.97736 0.92699 0.99253 1.21105 1.05948 1.00255 0.93660 1.21168 0.96781 0.94100 0.98034 1.20779 1.07626 0.93879 0.98005 0.92758 0.94688 0.89277 0.90372 0.94088 0.89337 0.87967 0.90624 0.92518 0.91596 0.94325 0.93147 0.98875 1.00004 0.93560 0.88170 0.85720 0.84717 0.84123 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -8.97 8.52 -148.98 -1.27 -10.24 16 3 C 0.04 0.85 6.28 71.98 0.45 1.31 16 4 C 0.12 2.64 4.79 86.38 0.41 3.05 16 5 N -0.62 -18.31 2.41 -697.33 -1.68 -19.99 16 6 C 0.14 4.79 4.66 86.38 0.40 5.20 16 7 C -0.08 -3.41 2.54 -10.79 -0.03 -3.44 16 8 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 9 C -0.12 -4.44 7.99 71.98 0.58 -3.86 16 10 C 0.02 1.03 3.76 29.85 0.11 1.14 16 11 C -0.60 -34.65 8.41 25.60 0.22 -34.44 16 12 H 0.05 2.66 7.06 -2.91 -0.02 2.64 16 13 C -0.04 -2.30 5.46 84.65 0.46 -1.84 16 14 N -0.94 -58.96 13.65 21.45 0.29 -58.66 16 15 Si 1.12 51.31 29.90 68.60 2.05 53.36 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C 0.22 6.78 6.30 38.21 0.24 7.02 16 20 C -0.22 -7.54 9.21 22.40 0.21 -7.34 16 21 C -0.09 -2.60 10.04 22.25 0.22 -2.38 16 22 C -0.19 -4.79 10.04 22.29 0.22 -4.57 16 23 C -0.08 -2.01 10.04 22.25 0.22 -1.78 16 24 C -0.18 -4.92 8.06 22.40 0.18 -4.74 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.09 1.86 6.20 -2.39 -0.01 1.85 16 31 H 0.10 2.14 5.98 -2.39 -0.01 2.13 16 32 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 33 H 0.06 2.09 6.19 -2.39 -0.01 2.07 16 34 H 0.07 1.99 5.89 -2.39 -0.01 1.97 16 35 H 0.04 1.56 6.95 -2.39 -0.02 1.55 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 38 H -0.02 -1.03 8.00 -2.39 -0.02 -1.05 16 39 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 40 H 0.10 3.72 6.14 -2.91 -0.02 3.70 16 41 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.13 3.21 5.52 -2.91 -0.02 3.20 16 Total: -1.00 -68.33 346.78 5.61 -62.73 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.06 Total: 17.75 kcal Atomic # 6 Polarization: -50.09 SS G_CDS: 5.15 Total: -44.94 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.39 Total: -78.65 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.27 Total: -10.24 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.36 kcal Total: -68.33 5.61 -62.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602683129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.010 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds