Wall clock time and date at job start Mon Mar 30 2020 01:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46637 * 2 1 4 4 C 1.50691 * 109.47160 * 240.00067 * 2 1 3 5 5 H 1.07998 * 120.00052 * 239.99813 * 4 2 1 6 6 C 1.37879 * 120.00125 * 60.00037 * 4 2 1 7 7 N 1.31518 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47110 * 60.00088 * 8 6 4 10 10 H 1.48501 * 109.47268 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47254 * 300.00236 * 8 6 4 12 12 N 1.46900 * 109.47073 * 119.99707 * 2 1 3 13 13 C 1.46894 * 111.00559 * 275.00312 * 12 2 1 14 14 C 1.52997 * 109.47515 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47069 * 304.99600 * 15 14 13 17 17 C 1.53006 * 109.46846 * 185.00166 * 15 14 13 18 18 O 1.42899 * 109.47405 * 64.99795 * 15 14 13 19 19 C 1.42895 * 113.99821 * 209.99781 * 18 15 14 20 20 C 1.50706 * 109.46688 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99770 * 269.72378 * 20 19 18 22 22 C 1.38231 * 119.99965 * 179.76580 * 21 20 19 23 23 C 1.38241 * 119.99996 * 0.51558 * 22 21 20 24 24 C 1.38240 * 119.99513 * 359.74029 * 23 22 21 25 25 C 1.38229 * 120.00147 * 90.00238 * 20 19 18 26 26 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47007 * 299.99951 * 1 2 3 28 28 H 1.08999 * 109.46772 * 60.00023 * 1 2 3 29 29 H 0.96996 * 120.00020 * 179.97438 * 7 6 4 30 30 H 1.00905 * 110.99607 * 38.95809 * 12 2 1 31 31 H 1.09002 * 109.47104 * 59.99767 * 13 12 2 32 32 H 1.08998 * 109.46828 * 300.00600 * 13 12 2 33 33 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 34 34 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 35 35 H 1.09002 * 109.46824 * 299.99583 * 17 15 14 36 36 H 1.09001 * 109.47241 * 59.99481 * 17 15 14 37 37 H 1.08996 * 109.46751 * 179.97438 * 17 15 14 38 38 H 1.09000 * 109.47385 * 299.99602 * 19 18 15 39 39 H 1.09000 * 109.47106 * 60.00440 * 19 18 15 40 40 H 1.07995 * 120.00057 * 0.02562 * 21 20 19 41 41 H 1.08000 * 120.00601 * 180.22986 * 22 21 20 42 42 H 1.07997 * 120.00505 * 179.72489 * 23 22 21 43 43 H 1.08001 * 119.99461 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00312 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8281 -2.5197 -4.0082 10 1 1.8270 -0.4198 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5962 -0.5329 3.5742 15 6 2.6610 0.4201 4.7694 16 1 3.2658 1.2888 4.5092 17 6 3.2910 -0.3009 5.9629 18 8 1.3403 0.8446 5.1123 19 6 1.2806 2.1522 5.6854 20 6 -0.1514 2.4948 6.0069 21 6 -0.9386 3.1296 5.0644 22 6 -2.2534 3.4394 5.3575 23 6 -2.7781 3.1241 6.5970 24 6 -1.9893 2.4940 7.5414 25 6 -0.6760 2.1794 7.2463 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1613 -3.4844 30 1 1.4496 -1.4979 1.4100 31 1 1.0871 0.6163 2.5525 32 1 2.7588 1.0462 2.1182 33 1 3.5917 -0.9262 3.3683 34 1 1.9202 -1.3567 3.8030 35 1 2.6862 -1.1696 6.2232 36 1 4.2984 -0.6247 5.7013 37 1 3.3375 0.3781 6.8143 38 1 1.8734 2.1756 6.5998 39 1 1.6777 2.8783 4.9761 40 1 -0.5275 3.3796 4.0976 41 1 -2.8696 3.9320 4.6199 42 1 -3.8040 3.3701 6.8276 43 1 -2.3991 2.2480 8.5099 44 1 -0.0596 1.6878 7.9845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:58 Heat of formation + Delta-G solvation = -53.344485 kcal Electronic energy + Delta-G solvation = -21102.631132 eV Core-core repulsion = 18018.532695 eV Total energy + Delta-G solvation = -3084.098438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38139 -39.23891 -37.81139 -35.15880 -33.85436 -32.31560 -31.81423 -30.88675 -28.15650 -27.23990 -26.93261 -23.64568 -23.49686 -22.31309 -22.15371 -21.80294 -18.36733 -18.08776 -17.60677 -16.80679 -16.71016 -16.34608 -16.12276 -15.47420 -15.39517 -15.06525 -14.83820 -14.32345 -14.22785 -13.86479 -13.78456 -13.64578 -13.34176 -13.11810 -12.94205 -12.90341 -12.77848 -12.61684 -12.30583 -12.19242 -11.99476 -11.95995 -11.82218 -11.66514 -11.50639 -11.05826 -10.48962 -10.47105 -9.85001 -9.77577 -8.97595 -8.09632 -6.21699 0.32483 0.47232 1.43412 1.45785 1.53550 2.44308 2.59694 3.14008 3.18113 3.53576 3.86559 3.88605 4.03750 4.11780 4.15253 4.27244 4.33204 4.36588 4.39100 4.43199 4.62574 4.64090 4.68406 4.75096 4.77786 4.85289 4.88546 5.03162 5.05774 5.06206 5.12868 5.16870 5.26406 5.35123 5.41820 5.52867 5.58459 5.65697 5.67132 5.80567 6.07706 6.25938 6.32896 6.64159 6.82045 6.93548 7.48370 8.95998 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.003499 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.619621 B = 8000.317703 C = 9189.244085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.687 5.687 13 C 0.068 3.932 14 C -0.102 4.102 15 C 0.086 3.914 16 H 0.065 0.935 17 C -0.165 4.165 18 O -0.394 6.394 19 C 0.101 3.899 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.109 4.109 26 H 0.031 0.969 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.011 0.989 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 3.646 22.328 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.317 5.317 13 C -0.062 4.062 14 C -0.140 4.140 15 C 0.028 3.972 16 H 0.083 0.917 17 C -0.222 4.222 18 O -0.314 6.314 19 C 0.025 3.975 20 C -0.106 4.106 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.127 4.127 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.628 3.737 21.995 22.370 hybrid contribution -0.641 0.165 -1.021 1.217 sum -2.270 3.901 20.974 21.455 Atomic orbital electron populations 1.22216 1.00223 0.99106 0.99749 1.18921 0.89889 0.92607 0.87874 0.98407 1.21450 1.30613 1.12601 0.91049 0.92528 1.25779 0.95408 0.95895 1.02042 1.70015 1.37984 1.24330 1.24086 0.85520 0.78685 0.78648 0.78195 1.19555 1.20928 1.19751 1.60724 1.57598 1.09670 1.03699 1.21821 0.98034 0.95493 0.90815 1.21619 1.02604 0.97880 0.91893 1.22190 0.83454 0.97009 0.94533 0.91694 1.22207 1.01387 1.01132 0.97477 1.88001 1.28964 1.32483 1.81984 1.21413 0.93264 0.84652 0.98181 1.19822 0.95767 0.99899 0.95112 1.21266 0.94997 0.98901 0.98820 1.21430 0.95141 1.00654 0.98083 1.21543 1.00983 0.98065 0.93265 1.21506 0.93768 0.98635 1.00642 1.21310 0.96361 0.98794 0.96186 0.94981 0.96283 0.91882 0.92972 0.85316 0.97076 0.93331 0.89198 0.91735 0.92163 0.90258 0.91428 0.90636 0.92851 0.86863 0.84796 0.83612 0.83322 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.86 8.94 71.98 0.64 -7.22 16 2 C 0.22 11.52 2.57 44.17 0.11 11.64 16 3 H 0.00 -0.12 7.80 -2.39 -0.02 -0.14 16 4 C -0.52 -29.84 8.84 25.60 0.23 -29.62 16 5 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 6 C 0.01 0.38 5.30 84.65 0.45 0.83 16 7 N -0.92 -54.71 11.32 21.45 0.24 -54.46 16 8 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 N -0.69 -30.73 6.23 -495.48 -3.09 -33.82 16 13 C 0.07 2.59 5.38 86.30 0.46 3.05 16 14 C -0.10 -2.97 5.18 30.59 0.16 -2.81 16 15 C 0.09 2.09 2.72 30.60 0.08 2.17 16 16 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 17 C -0.16 -3.03 9.53 71.98 0.69 -2.34 16 18 O -0.39 -10.95 9.51 -148.98 -1.42 -12.37 16 19 C 0.10 2.32 5.87 71.24 0.42 2.74 16 20 C -0.11 -2.55 5.51 -19.86 -0.11 -2.66 16 21 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 22 C -0.14 -2.95 10.05 22.27 0.22 -2.72 16 23 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 26 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.02 0.87 7.45 -2.39 -0.02 0.86 16 28 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.33 14.02 8.47 -89.69 -0.76 13.26 16 31 H 0.01 0.45 7.12 -2.39 -0.02 0.43 16 32 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 38 H 0.08 1.36 7.81 -2.39 -0.02 1.34 16 39 H 0.05 1.23 8.03 -2.39 -0.02 1.21 16 40 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -65.68 360.88 2.19 -63.49 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.19 Total: 26.09 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 4.24 Total: -35.76 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -2.84 Total: -88.28 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.42 Total: -12.37 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.68 2.19 -63.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.141 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds