Wall clock time and date at job start Mon Mar 30 2020 01:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.52997 * 109.47466 * 239.99904 * 2 1 3 5 5 C 1.53004 * 109.47057 * 174.99745 * 4 2 1 6 6 N 1.46901 * 109.46984 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00336 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.47111 * 325.00006 * 7 6 5 9 9 C 1.53005 * 109.47196 * 84.99406 * 7 6 5 10 10 C 1.50691 * 109.47694 * 205.00049 * 7 6 5 11 11 H 1.08005 * 119.99916 * 354.48174 * 10 7 6 12 12 C 1.37879 * 120.00577 * 174.47966 * 10 7 6 13 13 N 1.31510 * 120.00198 * 164.58060 * 12 10 7 14 14 Si 1.86797 * 119.99486 * 344.86619 * 12 10 7 15 15 H 1.48500 * 109.47007 * 269.71594 * 14 12 10 16 16 H 1.48498 * 109.47775 * 29.72179 * 14 12 10 17 17 H 1.48508 * 109.46999 * 149.72292 * 14 12 10 18 18 O 1.42898 * 109.47300 * 119.99799 * 2 1 3 19 19 C 1.42898 * 114.00210 * 270.00606 * 18 2 1 20 20 C 1.50700 * 109.47535 * 179.97438 * 19 18 2 21 21 C 1.38230 * 119.99890 * 269.72578 * 20 19 18 22 22 C 1.38238 * 120.00001 * 179.75982 * 21 20 19 23 23 C 1.38236 * 119.99767 * 0.51350 * 22 21 20 24 24 C 1.38228 * 120.00025 * 359.73908 * 23 22 21 25 25 C 1.38231 * 120.00140 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47156 * 60.00367 * 1 2 3 27 27 H 1.09001 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47472 * 299.99843 * 1 2 3 29 29 H 1.09006 * 109.46779 * 55.00021 * 4 2 1 30 30 H 1.08999 * 109.47300 * 295.00162 * 4 2 1 31 31 H 1.08989 * 109.47114 * 60.00284 * 5 4 2 32 32 H 1.08998 * 109.47053 * 299.99662 * 5 4 2 33 33 H 1.00905 * 111.00052 * 303.95588 * 6 5 4 34 34 H 1.08994 * 109.47388 * 293.55052 * 9 7 6 35 35 H 1.09005 * 109.46503 * 53.54384 * 9 7 6 36 36 H 1.08994 * 109.47024 * 173.54296 * 9 7 6 37 37 H 0.96999 * 120.00545 * 355.19703 * 13 12 10 38 38 H 1.09005 * 109.47372 * 299.99640 * 19 18 2 39 39 H 1.09000 * 109.47662 * 59.99726 * 19 18 2 40 40 H 1.07999 * 120.00154 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.99915 * 180.22928 * 22 21 20 42 42 H 1.07999 * 119.99594 * 179.72558 * 23 22 21 43 43 H 1.08003 * 120.00122 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00520 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 7 4.0546 -1.3051 -2.5133 7 6 5.5182 -1.2226 -2.6082 8 1 5.8534 -0.2590 -2.2243 9 6 6.1471 -2.3470 -1.7829 10 6 5.9369 -1.3623 -4.0490 11 1 5.2002 -1.5876 -4.8061 12 6 7.2604 -1.2025 -4.4011 13 7 7.6823 -1.6135 -5.5769 14 14 8.4557 -0.4095 -3.2046 15 1 8.4824 1.0578 -3.4310 16 1 8.0205 -0.6878 -1.8123 17 1 9.8149 -0.9682 -3.4194 18 8 2.0063 -0.6736 1.1668 19 6 2.2000 0.1830 2.2941 20 6 2.7002 -0.6283 3.4614 21 6 1.8010 -1.1948 4.3453 22 6 2.2596 -1.9431 5.4133 23 6 3.6179 -2.1160 5.6034 24 6 4.5173 -1.5451 4.7225 25 6 4.0585 -0.8009 3.6518 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6054 -0.2617 -2.1369 30 1 1.7517 -1.7715 -1.2056 31 1 3.9995 -1.0726 -0.4259 32 1 3.8532 0.4371 -1.3573 33 1 3.7452 -2.2655 -2.5285 34 1 5.9394 -2.1817 -0.7258 35 1 5.7247 -3.3036 -2.0909 36 1 7.2250 -2.3569 -1.9443 37 1 7.0801 -2.0912 -6.1686 38 1 2.9319 0.9514 2.0451 39 1 1.2537 0.6547 2.5589 40 1 0.7399 -1.0557 4.1995 41 1 1.5569 -2.3889 6.1017 42 1 3.9763 -2.6970 6.4403 43 1 5.5785 -1.6798 4.8713 44 1 4.7612 -0.3545 2.9637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:00 Heat of formation + Delta-G solvation = -54.650779 kcal Electronic energy + Delta-G solvation = -21194.350826 eV Core-core repulsion = 18110.195743 eV Total energy + Delta-G solvation = -3084.155083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38064 -39.26210 -37.94856 -35.18731 -34.01195 -32.43602 -31.80780 -31.22791 -28.38538 -26.96340 -26.74260 -23.62750 -23.49023 -22.29207 -22.09215 -21.63824 -19.57937 -18.09152 -17.61016 -16.81633 -16.48898 -16.31445 -16.07144 -15.58208 -15.37527 -15.22756 -14.86363 -14.30751 -14.16314 -14.10029 -13.85685 -13.80717 -13.48098 -13.34764 -13.17281 -13.02911 -12.78470 -12.45959 -12.24833 -11.98798 -11.94105 -11.83961 -11.82546 -11.53992 -11.41336 -11.03510 -10.52486 -10.44663 -9.84282 -9.77075 -9.10762 -8.66644 -6.31444 0.33056 0.47931 1.46516 1.52005 1.69977 2.50900 2.59323 3.08530 3.13519 3.43430 3.85079 3.89158 4.00716 4.11473 4.14881 4.27627 4.30832 4.34367 4.35861 4.42616 4.47131 4.58203 4.63345 4.67360 4.75192 4.75796 4.78585 4.84617 4.95930 5.06363 5.07369 5.13520 5.13638 5.25265 5.33522 5.41290 5.53439 5.59230 5.66033 5.87060 6.08171 6.08955 6.31697 6.41964 6.70801 6.77115 7.46294 8.66976 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003932 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.563667 B = 7119.167230 C = 8347.002415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.105 4.105 5 C 0.064 3.936 6 N -0.689 5.689 7 C 0.189 3.811 8 H 0.027 0.973 9 C -0.167 4.167 10 C -0.585 4.585 11 H 0.019 0.981 12 C -0.025 4.025 13 N -0.944 5.944 14 Si 1.085 2.915 15 H -0.274 1.274 16 H -0.242 1.242 17 H -0.285 1.285 18 O -0.393 6.393 19 C 0.100 3.900 20 C -0.105 4.105 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.119 4.119 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.330 0.670 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 3.430 25.055 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.087 0.913 4 C -0.143 4.143 5 C -0.065 4.065 6 N -0.319 5.319 7 C 0.080 3.920 8 H 0.045 0.955 9 C -0.227 4.227 10 C -0.624 4.624 11 H 0.037 0.963 12 C -0.222 4.222 13 N -0.581 5.581 14 Si 0.906 3.094 15 H -0.200 1.200 16 H -0.165 1.165 17 H -0.211 1.211 18 O -0.313 6.313 19 C 0.024 3.976 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.152 4.152 25 C -0.137 4.137 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.153 0.847 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.212 4.291 24.800 27.975 hybrid contribution -1.207 -1.159 -0.393 1.719 sum -13.419 3.132 24.407 28.029 Atomic orbital electron populations 1.22215 0.94252 1.02803 1.03118 1.22152 0.94543 0.95891 0.84406 0.91307 1.21621 0.94287 1.01465 0.96905 1.21916 0.95585 0.98382 0.90650 1.60609 1.11815 1.19910 1.39553 1.19365 0.84937 0.93733 0.94000 0.95483 1.22687 1.01240 1.00176 0.98568 1.22232 0.94387 1.51876 0.93892 0.96252 1.27177 0.99593 0.95617 0.99811 1.70926 1.38363 1.37522 1.11257 0.83621 0.73852 0.76495 0.75452 1.19998 1.16543 1.21128 1.88001 1.86927 1.36102 1.20313 1.21425 1.00283 0.91513 0.84344 1.19816 0.93907 1.00526 0.96304 1.21308 1.00041 0.96866 0.94651 1.21492 0.96345 0.98747 0.98158 1.21537 0.93504 0.99232 0.99695 1.21439 1.00958 0.97798 0.95007 1.21286 0.95329 0.99033 0.98084 0.90467 0.92348 0.91366 0.89671 0.91956 0.95937 0.92402 0.85284 0.93475 0.93951 0.93416 0.93972 0.92367 0.90917 0.84687 0.83615 0.83766 0.84584 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.53 71.98 0.69 -2.22 16 2 C 0.09 1.96 2.72 30.59 0.08 2.04 16 3 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 4 C -0.10 -2.87 5.18 30.59 0.16 -2.71 16 5 C 0.06 2.19 5.38 86.30 0.46 2.66 16 6 N -0.69 -29.31 6.23 -495.46 -3.09 -32.40 16 7 C 0.19 9.16 2.12 44.17 0.09 9.25 16 8 H 0.03 1.31 6.43 -2.38 -0.02 1.30 16 9 C -0.17 -7.32 8.45 71.98 0.61 -6.71 16 10 C -0.59 -34.55 9.12 25.60 0.23 -34.32 16 11 H 0.02 1.27 8.06 -2.91 -0.02 1.24 16 12 C -0.02 -1.49 5.33 84.66 0.45 -1.04 16 13 N -0.94 -60.80 13.70 21.45 0.29 -60.50 16 14 Si 1.08 50.85 26.17 68.60 1.80 52.65 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.24 -9.98 5.53 99.48 0.55 -9.43 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 O -0.39 -9.90 9.51 -148.98 -1.42 -11.32 16 19 C 0.10 2.04 5.87 71.24 0.42 2.46 16 20 C -0.11 -2.27 5.51 -19.87 -0.11 -2.38 16 21 C -0.11 -2.04 9.70 22.27 0.22 -1.83 16 22 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 0.99 7.87 -2.39 -0.02 0.97 16 29 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.02 0.79 7.25 -2.39 -0.02 0.77 16 32 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 33 H 0.33 13.59 8.39 -89.69 -0.75 12.84 16 34 H 0.05 1.80 7.63 -2.39 -0.02 1.78 16 35 H 0.04 1.82 8.01 -2.38 -0.02 1.80 16 36 H 0.05 2.12 5.06 -2.39 -0.01 2.11 16 37 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 38 H 0.06 1.14 8.03 -2.38 -0.02 1.12 16 39 H 0.07 1.17 7.81 -2.39 -0.02 1.15 16 40 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -70.00 356.07 1.78 -68.21 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.01 Total: 26.51 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 4.19 Total: -43.16 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -2.79 Total: -92.90 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.42 Total: -11.32 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.80 Total: 52.65 kcal Total: -70.00 1.78 -68.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.562 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds