Wall clock time and date at job start Mon Mar 30 2020 01:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.47091 * 179.97438 * 15 14 13 17 17 C 1.42896 * 113.99907 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47369 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.38231 * 120.00258 * 269.73243 * 19 18 17 21 21 C 1.38241 * 119.99844 * 179.76875 * 20 19 18 22 22 C 1.38234 * 120.00103 * 0.49557 * 21 20 19 23 23 C 1.38241 * 119.99890 * 359.75632 * 22 21 20 24 24 C 1.38236 * 119.99689 * 90.00324 * 19 18 17 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 30 30 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 31 31 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 32 32 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 33 33 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 34 34 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 35 35 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 36 36 H 1.09000 * 109.47238 * 300.00494 * 17 16 15 37 37 H 1.09002 * 109.46850 * 59.99681 * 17 16 15 38 38 H 1.09000 * 109.47285 * 300.00393 * 18 17 16 39 39 H 1.09008 * 109.46693 * 60.00415 * 18 17 16 40 40 H 1.08000 * 120.00180 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.99441 * 180.23108 * 21 20 19 42 42 H 1.07996 * 119.99921 * 179.72864 * 22 21 20 43 43 H 1.08000 * 119.99827 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.99997 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 8 3.1426 -0.2846 -5.9153 17 6 3.2420 0.5189 -7.0928 18 6 3.7630 -0.3350 -8.2504 19 6 3.8672 0.5122 -9.4924 20 6 2.7928 0.6065 -10.3570 21 6 2.8869 1.3875 -11.4937 22 6 4.0588 2.0660 -11.7711 23 6 5.1351 1.9676 -10.9092 24 6 5.0393 1.1907 -9.7698 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.9172 -1.1204 -1.0288 30 1 1.0871 0.6165 -2.5525 31 1 2.7588 1.0464 -2.1181 32 1 3.5917 -0.9260 -3.3683 33 1 1.9201 -1.3564 -3.8032 34 1 1.6669 0.8145 -4.9752 35 1 3.3384 1.2443 -4.5399 36 1 2.2585 0.9140 -7.3471 37 1 3.9297 1.3450 -6.9119 38 1 4.7465 -0.7305 -7.9964 39 1 3.0748 -1.1608 -8.4312 40 1 1.8788 0.0726 -10.1427 41 1 2.0461 1.4641 -12.1673 42 1 4.1338 2.6726 -12.6615 43 1 6.0509 2.4974 -11.1261 44 1 5.8804 1.1132 -9.0968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:28 Heat of formation + Delta-G solvation = -42.739501 kcal Electronic energy + Delta-G solvation = -19911.669598 eV Core-core repulsion = 16828.031027 eV Total energy + Delta-G solvation = -3083.638571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67722 -38.10483 -36.16960 -33.99917 -33.04640 -31.22730 -31.18543 -28.92212 -27.67821 -25.26538 -24.06292 -23.41185 -22.91292 -21.37332 -20.80271 -19.73949 -17.20727 -16.66950 -16.46360 -16.25913 -15.46731 -15.31281 -14.98507 -14.71972 -14.44757 -13.78691 -13.60144 -13.46643 -13.31214 -12.98170 -12.85304 -12.32064 -11.85097 -11.74676 -11.62559 -11.39105 -11.26105 -11.14132 -10.92917 -10.88630 -10.64435 -10.57295 -10.18831 -10.10205 -9.87008 -9.61504 -9.25887 -9.05639 -8.81289 -8.46577 -7.25787 -6.01900 -4.08224 0.98730 1.05946 3.30725 3.33976 3.36868 3.40146 3.65266 4.41037 4.49369 4.56847 4.68844 4.80606 4.84399 4.96168 5.15674 5.17482 5.22118 5.23065 5.27282 5.32005 5.46646 5.56246 5.56708 5.68301 5.74484 5.79777 5.82570 6.00798 6.12548 6.14764 6.17537 6.30624 6.52175 6.57381 6.66425 6.90012 7.15304 7.18114 7.25301 7.52084 7.79278 7.91150 8.28606 8.40511 8.68972 9.02616 9.57617 11.04508 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.051576 B = 0.001970 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.762802 B =14213.099709 C =14367.594752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.689 5.689 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.066 3.934 16 O -0.389 6.389 17 C 0.069 3.931 18 C -0.080 4.080 19 C -0.080 4.080 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.856 2.545 -26.835 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.320 5.320 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.011 4.011 16 O -0.309 6.309 17 C -0.008 4.008 18 C -0.118 4.118 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.195 2.231 -26.837 27.427 hybrid contribution 0.945 0.519 1.041 1.498 sum 6.140 2.749 -25.797 26.659 Atomic orbital electron populations 1.21717 0.97887 0.99357 0.99312 1.19117 0.92655 0.92329 0.85625 0.98192 1.21274 1.31427 1.12480 0.90456 0.92177 1.24939 0.95096 0.95010 0.99089 1.69903 1.36717 1.22879 1.23437 0.86503 0.79212 0.79303 0.82392 1.20607 1.19936 1.21299 1.60697 1.32144 1.33128 1.06025 1.21774 0.99625 0.94130 0.91103 1.21509 1.02388 0.98755 0.92523 1.22519 0.97818 0.95131 0.85644 1.87851 1.87084 1.37652 1.18297 1.22379 0.99745 0.93449 0.85235 1.20487 1.03302 0.97412 0.90557 1.19781 0.94114 0.98040 0.96112 1.21127 0.98366 0.99208 0.94584 1.21171 0.97945 0.97241 0.97378 1.21177 0.93589 0.99869 0.99668 1.21170 0.98800 0.98991 0.94780 1.21125 0.97589 0.97120 0.97467 0.94942 0.90112 0.97748 0.92943 0.85211 0.91812 0.96339 0.91601 0.90579 0.93329 0.93537 0.93346 0.93385 0.90023 0.89997 0.85880 0.86021 0.86160 0.86029 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.44 2.60 -68.87 -0.18 5.26 16 3 H 0.00 0.01 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.41 8.59 -34.44 -0.30 -14.70 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.69 -15.06 6.30 -107.95 -0.68 -15.74 16 13 C 0.06 1.16 5.48 -3.82 -0.02 1.14 16 14 C -0.11 -1.73 5.84 -26.73 -0.16 -1.89 16 15 C 0.07 0.87 5.94 37.16 0.22 1.09 16 16 O -0.39 -5.16 10.34 -35.23 -0.36 -5.52 16 17 C 0.07 0.71 5.92 37.15 0.22 0.93 16 18 C -0.08 -0.72 5.71 -27.89 -0.16 -0.88 16 19 C -0.08 -0.70 5.13 -104.63 -0.54 -1.23 16 20 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.33 7.04 8.22 -39.30 -0.32 6.71 16 30 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 31 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.08 0.72 8.08 -51.92 -0.42 0.30 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -29.87 362.51 -10.28 -40.15 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.68 Total: 2.30 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.62 Total: -17.99 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.05 Total: -40.80 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.36 Total: -5.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.87 -10.28 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.594 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds