Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.53005 * 109.46887 * 239.99845 * 2 1 3 5 5 C 1.50701 * 109.46829 * 65.00385 * 4 2 1 6 6 H 1.07994 * 120.00247 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99439 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99536 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46973 * 89.99629 * 9 7 5 11 11 H 1.48494 * 109.46881 * 209.99990 * 9 7 5 12 12 H 1.48502 * 109.47152 * 329.99878 * 9 7 5 13 13 C 1.52996 * 109.47067 * 119.99973 * 2 1 3 14 14 N 1.46899 * 109.47042 * 181.78968 * 13 2 1 15 15 C 1.46894 * 111.00131 * 74.92587 * 14 13 2 16 16 C 1.46908 * 110.99815 * 198.87408 * 14 13 2 17 17 C 1.53003 * 109.46794 * 163.15461 * 16 14 13 18 18 O 1.42895 * 109.47117 * 67.17030 * 17 16 14 19 19 C 1.35901 * 116.99760 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.06099 * 359.72635 * 19 18 17 21 21 C 1.38142 * 119.94905 * 179.74199 * 20 19 18 22 22 C 1.38268 * 120.05450 * 0.51072 * 21 20 19 23 23 C 1.38268 * 120.11130 * 359.76513 * 22 21 20 24 24 C 1.38148 * 120.05320 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46943 * 294.76044 * 1 2 3 26 26 H 1.09000 * 109.47199 * 54.75371 * 1 2 3 27 27 H 1.08996 * 109.47373 * 174.75642 * 1 2 3 28 28 H 1.09001 * 109.46796 * 185.00366 * 4 2 1 29 29 H 1.08993 * 109.47345 * 305.00080 * 4 2 1 30 30 H 0.96999 * 120.00199 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47365 * 301.79159 * 13 2 1 32 32 H 1.09010 * 109.47218 * 61.79353 * 13 2 1 33 33 H 1.09007 * 109.47277 * 68.77598 * 15 14 13 34 34 H 1.08993 * 109.47629 * 188.78211 * 15 14 13 35 35 H 1.09008 * 109.46896 * 308.78286 * 15 14 13 36 36 H 1.08996 * 109.47205 * 283.15414 * 16 14 13 37 37 H 1.08999 * 109.46700 * 43.15958 * 16 14 13 38 38 H 1.09000 * 109.47072 * 187.17434 * 17 16 14 39 39 H 1.09006 * 109.47187 * 307.16753 * 17 16 14 40 40 H 1.08007 * 120.02233 * 359.97438 * 20 19 18 41 41 H 1.07997 * 119.97831 * 180.27421 * 21 20 19 42 42 H 1.07994 * 119.94529 * 179.74449 * 22 21 20 43 43 H 1.08001 * 119.97380 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.02697 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4023 -3.7284 8 7 2.6753 -1.5194 -3.8512 9 14 1.4975 0.5621 -5.2498 10 1 2.5627 1.5416 -5.5830 11 1 1.3100 -0.3721 -6.3887 12 1 0.2264 1.2835 -4.9869 13 6 2.0400 -0.7212 1.2492 14 7 3.5083 -0.6839 1.2710 15 6 3.9955 0.6504 1.6456 16 6 4.0478 -1.7128 2.1702 17 6 5.5303 -1.9327 1.8623 18 8 6.2687 -0.7610 2.2141 19 6 7.6108 -0.7910 2.0026 20 6 8.2056 -1.9268 1.4728 21 6 9.5693 -1.9528 1.2537 22 6 10.3429 -0.8519 1.5720 23 6 9.7534 0.2793 2.1055 24 6 8.3893 0.3123 2.3214 25 1 -0.3633 0.4304 0.9332 26 1 -0.3633 0.5931 -0.8393 27 1 -0.3634 -1.0233 -0.0939 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 2.9219 -1.8427 -4.7318 31 1 1.6506 -0.2263 2.1389 32 1 1.7031 -1.7578 1.2333 33 1 3.7578 0.8435 2.6917 34 1 5.0752 0.6960 1.5038 35 1 3.5147 1.4018 1.0191 36 1 3.9359 -1.3866 3.2042 37 1 3.5038 -2.6457 2.0226 38 1 5.8990 -2.7813 2.4384 39 1 5.6543 -2.1346 0.7983 40 1 7.6024 -2.7887 1.2282 41 1 10.0322 -2.8351 0.8372 42 1 11.4094 -0.8756 1.4039 43 1 10.3599 1.1379 2.3537 44 1 7.9293 1.1959 2.7385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = -20.578070 kcal Electronic energy + Delta-G solvation = -21478.641254 eV Core-core repulsion = 18395.963675 eV Total energy + Delta-G solvation = -3082.677579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10081 -38.04491 -36.94097 -34.27784 -32.05640 -31.13528 -30.28166 -29.01547 -27.08011 -26.42419 -24.52958 -22.99985 -22.44581 -21.98417 -20.67884 -18.73142 -18.30855 -16.48026 -16.17207 -16.09511 -15.70419 -14.96227 -14.61002 -14.40711 -14.26008 -13.97128 -13.47260 -13.38784 -12.93585 -12.51891 -12.39764 -12.20445 -11.92442 -11.80966 -11.58958 -11.32218 -11.28724 -11.09404 -10.88489 -10.82503 -10.73443 -10.55650 -10.27583 -10.03106 -9.58878 -9.04421 -9.02280 -8.81078 -8.21055 -8.17355 -7.77626 -5.85664 -3.85543 1.30175 1.43760 3.27096 3.38836 3.44949 3.47787 3.77108 4.26482 4.56632 4.77373 4.84999 5.06128 5.09381 5.24644 5.31217 5.33976 5.42018 5.50037 5.56088 5.62503 5.70133 5.79732 5.85229 5.95409 6.02743 6.08547 6.13963 6.28195 6.30560 6.36503 6.42133 6.48054 6.49390 6.61927 6.75952 7.02378 7.08086 7.34427 7.46962 7.51012 7.61059 7.88913 8.11345 8.25411 8.61346 9.22470 9.76418 11.25587 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.004061 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.997029 B = 6892.818550 C = 7967.889450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.063 3.937 14 N -0.527 5.527 15 C 0.027 3.973 16 C 0.059 3.941 17 C 0.063 3.937 18 O -0.307 6.307 19 C 0.137 3.863 20 C -0.208 4.208 21 C -0.081 4.081 22 C -0.167 4.167 23 C -0.083 4.083 24 C -0.157 4.157 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.008 0.992 30 H 0.257 0.743 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 -0.529 14.988 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.064 4.064 14 N -0.250 5.250 15 C -0.121 4.121 16 C -0.070 4.070 17 C -0.012 4.012 18 O -0.221 6.221 19 C 0.091 3.909 20 C -0.227 4.227 21 C -0.099 4.099 22 C -0.185 4.185 23 C -0.101 4.101 24 C -0.176 4.176 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.634 -0.604 14.463 17.962 hybrid contribution -0.496 0.403 -0.308 0.709 sum 10.138 -0.201 14.155 17.413 Atomic orbital electron populations 1.21694 0.96520 1.01157 0.99574 1.21214 0.94067 0.99277 0.95668 0.92676 1.19032 0.97460 0.94351 0.89194 1.21336 1.34178 1.08110 0.91446 0.93058 1.24977 0.95527 0.95063 0.98825 1.69968 1.39359 1.21226 1.23013 0.86725 0.78832 0.79915 0.83283 1.20852 1.21422 1.20066 1.22294 0.85947 1.00635 0.97550 1.61900 1.09062 1.04293 1.49792 1.22542 1.02002 0.90296 0.97250 1.22180 0.92521 0.97339 0.94956 1.22990 0.91109 0.85741 1.01391 1.86162 1.15746 1.40006 1.80169 1.19101 0.83347 0.94058 0.94377 1.21326 0.96321 0.98763 1.06290 1.20951 0.93169 0.98279 0.97481 1.21013 0.99874 0.94208 1.03401 1.20935 0.93791 0.97964 0.97442 1.20453 0.93327 0.97894 1.05909 0.95389 0.92059 0.93555 0.94824 0.97402 0.93334 0.96275 0.91652 0.96790 0.90134 0.91457 0.94373 0.88979 0.92111 0.90356 0.85367 0.85999 0.86233 0.85682 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.92 37.16 0.33 -2.18 16 2 C -0.08 -1.73 2.37 -90.62 -0.21 -1.95 16 3 H 0.05 1.18 6.71 -51.93 -0.35 0.83 16 4 C 0.04 0.95 4.38 -27.88 -0.12 0.83 16 5 C -0.51 -14.63 8.47 -34.44 -0.29 -14.92 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 9 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.10 4.42 -3.83 -0.02 1.08 16 14 N -0.53 -9.04 3.87 -242.91 -0.94 -9.98 16 15 C 0.03 0.44 8.92 60.06 0.54 0.97 16 16 C 0.06 0.81 5.53 -3.82 -0.02 0.79 16 17 C 0.06 0.83 5.03 37.16 0.19 1.02 16 18 O -0.31 -4.39 7.24 -19.43 -0.14 -4.53 16 19 C 0.14 1.86 6.69 -39.22 -0.26 1.60 16 20 C -0.21 -2.60 9.04 -39.44 -0.36 -2.96 16 21 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 22 C -0.17 -1.73 10.04 -39.56 -0.40 -2.13 16 23 C -0.08 -0.88 10.04 -39.60 -0.40 -1.28 16 24 C -0.16 -1.92 9.99 -39.43 -0.39 -2.32 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.25 7.11 -51.93 -0.37 0.88 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.95 7.51 -51.93 -0.39 0.56 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.02 0.31 8.01 -51.93 -0.42 -0.11 16 32 H 0.06 1.11 7.65 -51.92 -0.40 0.72 16 33 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 34 H 0.08 1.32 5.70 -51.93 -0.30 1.03 16 35 H 0.07 1.16 6.58 -51.92 -0.34 0.82 16 36 H 0.04 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.09 1.16 7.67 -51.93 -0.40 0.76 16 38 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 39 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 40 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -31.60 351.12 -9.37 -40.97 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.38 Total: -1.00 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -1.92 Total: -21.18 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.20 Total: -36.67 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.14 Total: -4.53 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.60 -9.37 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.388 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds