Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.53005 * 109.46887 * 239.99845 * 2 1 3 5 5 C 1.50701 * 109.46829 * 65.00385 * 4 2 1 6 6 H 1.07994 * 120.00247 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99439 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99536 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46973 * 89.99629 * 9 7 5 11 11 H 1.48494 * 109.46881 * 209.99990 * 9 7 5 12 12 H 1.48502 * 109.47152 * 329.99878 * 9 7 5 13 13 C 1.52996 * 109.47067 * 119.99973 * 2 1 3 14 14 N 1.46899 * 109.47042 * 181.78968 * 13 2 1 15 15 C 1.46894 * 111.00131 * 74.92587 * 14 13 2 16 16 C 1.46908 * 110.99815 * 198.87408 * 14 13 2 17 17 C 1.53003 * 109.46794 * 163.15461 * 16 14 13 18 18 O 1.42895 * 109.47117 * 67.17030 * 17 16 14 19 19 C 1.35901 * 116.99760 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.06099 * 359.72635 * 19 18 17 21 21 C 1.38142 * 119.94905 * 179.74199 * 20 19 18 22 22 C 1.38268 * 120.05450 * 0.51072 * 21 20 19 23 23 C 1.38268 * 120.11130 * 359.76513 * 22 21 20 24 24 C 1.38148 * 120.05320 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46943 * 294.76044 * 1 2 3 26 26 H 1.09000 * 109.47199 * 54.75371 * 1 2 3 27 27 H 1.08996 * 109.47373 * 174.75642 * 1 2 3 28 28 H 1.09001 * 109.46796 * 185.00366 * 4 2 1 29 29 H 1.08993 * 109.47345 * 305.00080 * 4 2 1 30 30 H 0.96999 * 120.00199 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47365 * 301.79159 * 13 2 1 32 32 H 1.09010 * 109.47218 * 61.79353 * 13 2 1 33 33 H 1.09007 * 109.47277 * 68.77598 * 15 14 13 34 34 H 1.08993 * 109.47629 * 188.78211 * 15 14 13 35 35 H 1.09008 * 109.46896 * 308.78286 * 15 14 13 36 36 H 1.08996 * 109.47205 * 283.15414 * 16 14 13 37 37 H 1.08999 * 109.46700 * 43.15958 * 16 14 13 38 38 H 1.09000 * 109.47072 * 187.17434 * 17 16 14 39 39 H 1.09006 * 109.47187 * 307.16753 * 17 16 14 40 40 H 1.08007 * 120.02233 * 359.97438 * 20 19 18 41 41 H 1.07997 * 119.97831 * 180.27421 * 21 20 19 42 42 H 1.07994 * 119.94529 * 179.74449 * 22 21 20 43 43 H 1.08001 * 119.97380 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.02697 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4023 -3.7284 8 7 2.6753 -1.5194 -3.8512 9 14 1.4975 0.5621 -5.2498 10 1 2.5627 1.5416 -5.5830 11 1 1.3100 -0.3721 -6.3887 12 1 0.2264 1.2835 -4.9869 13 6 2.0400 -0.7212 1.2492 14 7 3.5083 -0.6839 1.2710 15 6 3.9955 0.6504 1.6456 16 6 4.0478 -1.7128 2.1702 17 6 5.5303 -1.9327 1.8623 18 8 6.2687 -0.7610 2.2141 19 6 7.6108 -0.7910 2.0026 20 6 8.2056 -1.9268 1.4728 21 6 9.5693 -1.9528 1.2537 22 6 10.3429 -0.8519 1.5720 23 6 9.7534 0.2793 2.1055 24 6 8.3893 0.3123 2.3214 25 1 -0.3633 0.4304 0.9332 26 1 -0.3633 0.5931 -0.8393 27 1 -0.3634 -1.0233 -0.0939 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 2.9219 -1.8427 -4.7318 31 1 1.6506 -0.2263 2.1389 32 1 1.7031 -1.7578 1.2333 33 1 3.7578 0.8435 2.6917 34 1 5.0752 0.6960 1.5038 35 1 3.5147 1.4018 1.0191 36 1 3.9359 -1.3866 3.2042 37 1 3.5038 -2.6457 2.0226 38 1 5.8990 -2.7813 2.4384 39 1 5.6543 -2.1346 0.7983 40 1 7.6024 -2.7887 1.2282 41 1 10.0322 -2.8351 0.8372 42 1 11.4094 -0.8756 1.4039 43 1 10.3599 1.1379 2.3537 44 1 7.9293 1.1959 2.7385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = -37.985657 kcal Electronic energy + Delta-G solvation = -21479.396104 eV Core-core repulsion = 18395.963675 eV Total energy + Delta-G solvation = -3083.432429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06142 -39.24633 -38.08561 -35.97324 -34.07981 -32.06041 -31.30941 -30.04437 -29.05229 -27.85334 -25.87869 -24.71031 -23.54854 -23.05940 -21.78880 -20.42324 -19.25825 -18.47308 -17.44711 -17.07280 -16.66653 -16.57856 -16.15234 -15.72767 -15.38699 -15.17240 -14.86496 -14.34026 -14.28655 -14.02718 -13.79405 -13.61498 -13.43144 -13.05751 -12.97732 -12.78255 -12.59888 -12.56621 -12.41455 -12.30269 -12.20383 -11.99314 -11.70915 -11.49233 -11.41870 -10.90051 -10.84785 -10.45203 -9.91958 -9.12938 -9.04828 -8.10300 -6.18166 0.42594 0.54112 1.39847 1.40969 1.51305 2.29266 2.45236 2.88732 3.03671 3.22693 3.85763 3.99421 4.05779 4.12254 4.21565 4.28109 4.31918 4.37070 4.47756 4.52873 4.55608 4.60190 4.62567 4.71599 4.80840 4.84127 4.88381 4.94184 4.97029 5.10841 5.23804 5.33329 5.43299 5.47162 5.51892 5.53517 5.62605 5.68152 5.90949 5.96640 6.06054 6.25317 6.29951 6.40958 6.51149 7.00586 7.48668 9.01175 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.004061 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.997029 B = 6892.818550 C = 7967.889450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 H 0.046 0.954 4 C 0.049 3.951 5 C -0.529 4.529 6 H 0.054 0.946 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.072 3.928 14 N -0.556 5.556 15 C 0.035 3.965 16 C 0.060 3.940 17 C 0.067 3.933 18 O -0.320 6.320 19 C 0.109 3.891 20 C -0.225 4.225 21 C -0.089 4.089 22 C -0.167 4.167 23 C -0.084 4.084 24 C -0.173 4.173 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.001 0.999 29 H -0.020 1.020 30 H 0.259 0.741 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 0.161 15.834 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.097 4.097 3 H 0.065 0.935 4 C 0.012 3.988 5 C -0.567 4.567 6 H 0.072 0.928 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.056 4.056 14 N -0.280 5.280 15 C -0.112 4.112 16 C -0.067 4.067 17 C -0.008 4.008 18 O -0.235 6.235 19 C 0.064 3.936 20 C -0.243 4.243 21 C -0.107 4.107 22 C -0.185 4.185 23 C -0.102 4.102 24 C -0.191 4.191 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.020 0.980 29 H -0.002 1.002 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.983 0.094 15.325 18.854 hybrid contribution -0.514 0.177 -0.561 0.781 sum 10.469 0.271 14.764 18.101 Atomic orbital electron populations 1.21611 0.94939 1.01052 1.00744 1.21079 0.95402 0.98371 0.94874 0.93531 1.18819 0.95245 0.93314 0.91420 1.21760 1.33956 1.08360 0.92671 0.92752 1.25871 0.95489 0.96066 1.02324 1.70109 1.40546 1.22919 1.23858 0.85623 0.78905 0.78501 0.79080 1.20259 1.20908 1.18813 1.22121 0.86388 1.00526 0.96530 1.61820 1.09017 1.05367 1.51813 1.22419 1.01337 0.89649 0.97829 1.22244 0.92640 0.96811 0.95039 1.22940 0.91064 0.86555 1.00285 1.86113 1.16385 1.40459 1.80494 1.19404 0.83200 0.95131 0.95847 1.21503 0.97291 0.98731 1.06820 1.21296 0.92712 0.99499 0.97197 1.21413 1.01278 0.93645 1.02190 1.21314 0.93316 0.99044 0.96528 1.20714 0.94253 0.97818 1.06366 0.91763 0.93839 0.93730 0.98032 1.00163 0.93237 0.93758 0.91340 0.95014 0.90811 0.93086 0.92785 0.87942 0.89535 0.92904 0.85210 0.83944 0.83488 0.82931 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.92 71.98 0.64 -4.01 16 2 C -0.08 -3.25 2.37 -10.79 -0.03 -3.28 16 3 H 0.05 2.00 6.71 -2.39 -0.02 1.99 16 4 C 0.05 2.64 4.38 29.85 0.13 2.77 16 5 C -0.53 -30.80 8.47 25.60 0.22 -30.58 16 6 H 0.05 3.06 7.06 -2.91 -0.02 3.04 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 9 Si 0.95 45.74 29.54 68.60 2.03 47.77 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.07 2.44 4.42 86.30 0.38 2.82 16 14 N -0.56 -19.06 3.87 -922.43 -3.57 -22.64 16 15 C 0.04 1.15 8.92 127.69 1.14 2.29 16 16 C 0.06 1.62 5.53 86.30 0.48 2.10 16 17 C 0.07 1.78 5.03 71.98 0.36 2.14 16 18 O -0.32 -9.27 7.24 -92.43 -0.67 -9.94 16 19 C 0.11 3.01 6.69 22.51 0.15 3.16 16 20 C -0.22 -5.64 9.04 22.36 0.20 -5.44 16 21 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 22 C -0.17 -3.14 10.04 22.28 0.22 -2.92 16 23 C -0.08 -1.64 10.04 22.26 0.22 -1.42 16 24 C -0.17 -4.18 9.99 22.37 0.22 -3.95 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.73 7.11 -2.39 -0.02 1.71 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.00 0.08 7.51 -2.39 -0.02 0.06 16 29 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.04 1.30 8.01 -2.39 -0.02 1.28 16 32 H 0.07 2.27 7.65 -2.38 -0.02 2.25 16 33 H 0.03 0.89 8.01 -2.38 -0.02 0.87 16 34 H 0.07 2.48 5.70 -2.39 -0.01 2.46 16 35 H 0.05 1.77 6.58 -2.38 -0.02 1.76 16 36 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 37 H 0.10 2.50 7.67 -2.39 -0.02 2.48 16 38 H 0.09 1.81 7.65 -2.39 -0.02 1.79 16 39 H 0.05 1.65 7.68 -2.38 -0.02 1.64 16 40 H 0.13 3.06 6.30 -2.91 -0.02 3.04 16 41 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.26 351.12 4.05 -65.21 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.95 Total: 15.35 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 5.03 Total: -37.54 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -3.29 Total: -80.85 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.67 Total: -9.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -69.26 4.05 -65.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.223 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds