Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46914 * 2 1 4 4 C 1.36006 * 117.00040 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.07916 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01992 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.17968 * 0.02562 * 6 5 4 8 8 C 1.38221 * 120.15675 * 359.97438 * 7 6 5 9 9 C 1.38728 * 119.98329 * 0.02562 * 8 7 6 10 10 N 1.39963 * 120.09000 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00175 * 63.93013 * 10 9 8 12 12 C 1.46902 * 110.99710 * 299.97759 * 10 9 8 13 13 C 1.52999 * 109.47011 * 190.00274 * 12 10 9 14 14 H 1.09005 * 109.47212 * 304.99702 * 13 12 10 15 15 C 1.52998 * 109.47169 * 64.99568 * 13 12 10 16 16 C 1.53004 * 109.47260 * 185.00098 * 13 12 10 17 17 C 1.50696 * 109.47083 * 174.99850 * 16 13 12 18 18 H 1.08007 * 120.00356 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00178 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99245 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46992 * 90.00489 * 21 19 17 23 23 H 1.48496 * 109.46944 * 210.00014 * 21 19 17 24 24 H 1.48496 * 109.46982 * 330.00266 * 21 19 17 25 25 H 1.09010 * 109.46921 * 299.99630 * 1 2 3 26 26 H 1.08993 * 109.47371 * 59.99935 * 1 2 3 27 27 H 1.08997 * 109.46665 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46934 * 240.00851 * 2 1 3 29 29 H 1.08993 * 109.47371 * 120.00065 * 2 1 3 30 30 H 1.08003 * 119.99369 * 359.96020 * 5 4 3 31 31 H 1.07997 * 119.91569 * 179.72615 * 6 5 4 32 32 H 1.07999 * 119.91895 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.01009 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47070 * 60.00264 * 11 10 9 35 35 H 1.09000 * 109.47020 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47314 * 299.99906 * 11 10 9 37 37 H 1.08998 * 109.47020 * 310.00024 * 12 10 9 38 38 H 1.08993 * 109.47250 * 70.00458 * 12 10 9 39 39 H 1.08993 * 109.47797 * 300.00182 * 15 13 12 40 40 H 1.09000 * 109.46866 * 60.00436 * 15 13 12 41 41 H 1.09004 * 109.46918 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.46709 * 294.99747 * 16 13 12 43 43 H 1.08991 * 109.47051 * 54.99665 * 16 13 12 44 44 H 0.97000 * 119.99249 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5256 -0.0005 5 6 4.1999 0.4284 -0.0005 6 6 5.5707 0.6111 -0.0016 7 6 6.1018 1.8876 -0.0022 8 6 5.2650 2.9878 -0.0022 9 6 3.8889 2.8122 -0.0011 10 7 3.0396 3.9247 -0.0017 11 6 3.1983 4.7076 -1.2344 12 6 3.2656 4.7601 1.1853 13 6 2.1644 5.8179 1.2817 14 1 2.1236 6.3856 0.3520 15 6 0.8177 5.1319 1.5199 16 6 2.4672 6.7650 2.4446 17 6 1.4510 7.8775 2.4640 18 1 0.6672 7.9061 1.7215 19 6 1.5211 8.8585 3.4304 20 7 2.4752 8.8234 4.3349 21 14 0.2618 10.2381 3.4541 22 1 -0.8940 9.8387 4.2966 23 1 0.8824 11.4651 4.0148 24 1 -0.2039 10.5069 2.0700 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7884 -0.5702 0.0006 31 1 6.2282 -0.2457 0.0029 32 1 7.1729 2.0254 -0.0026 33 1 5.6825 3.9839 -0.0022 34 1 2.9572 4.0834 -2.0949 35 1 2.5273 5.5662 -1.2085 36 1 4.2286 5.0545 -1.3145 37 1 3.2482 4.1351 2.0782 38 1 4.2352 5.2514 1.1046 39 1 0.6019 4.4573 0.6915 40 1 0.8586 4.5643 2.4495 41 1 0.0333 5.8856 1.5890 42 1 2.4204 6.2137 3.3837 43 1 3.4647 7.1861 2.3199 44 1 2.5248 9.5137 5.0146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = -19.280004 kcal Electronic energy + Delta-G solvation = -21833.237657 eV Core-core repulsion = 18750.616366 eV Total energy + Delta-G solvation = -3082.621291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35980 -38.18030 -36.71669 -34.26612 -32.07554 -31.80825 -30.03255 -29.02127 -27.07795 -26.35557 -24.76090 -23.95306 -22.65803 -21.74640 -20.69921 -18.75861 -18.17270 -16.51511 -16.15164 -16.08760 -15.91884 -14.82780 -14.54391 -14.34346 -14.33182 -14.06897 -13.46597 -13.17712 -12.88686 -12.66996 -12.51293 -12.22369 -12.01340 -11.89405 -11.70799 -11.57075 -11.32114 -11.16860 -10.89697 -10.79433 -10.77481 -10.68198 -10.23178 -10.20806 -9.53250 -9.15573 -8.94878 -8.76702 -8.28118 -8.06717 -8.02090 -5.93183 -3.93891 1.26305 1.46721 3.24124 3.36171 3.42229 3.45701 3.73131 4.12214 4.52316 4.74988 4.81880 4.93724 4.99964 5.08458 5.14061 5.35710 5.41542 5.42581 5.46709 5.65418 5.67772 5.70422 5.77325 5.83967 5.96147 5.98861 6.13953 6.23691 6.28279 6.38106 6.48366 6.51056 6.61419 6.77069 6.81399 7.10350 7.21226 7.27643 7.34369 7.45583 7.74995 7.81584 7.92175 8.07631 8.51950 9.12501 9.69156 11.18459 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004029 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.659087 B = 6947.129262 C = 7740.643239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.289 6.289 4 C 0.151 3.849 5 C -0.211 4.211 6 C -0.089 4.089 7 C -0.151 4.151 8 C -0.111 4.111 9 C 0.067 3.933 10 N -0.493 5.493 11 C 0.030 3.970 12 C 0.067 3.933 13 C -0.080 4.080 14 H 0.057 0.943 15 C -0.121 4.121 16 C 0.027 3.973 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -18.927 -10.709 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.202 6.202 4 C 0.104 3.896 5 C -0.230 4.230 6 C -0.108 4.108 7 C -0.170 4.170 8 C -0.131 4.131 9 C -0.028 4.028 10 N -0.214 5.214 11 C -0.117 4.117 12 C -0.059 4.059 13 C -0.099 4.099 14 H 0.075 0.925 15 C -0.179 4.179 16 C -0.010 4.010 17 C -0.548 4.548 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.685 -18.835 -10.542 21.751 hybrid contribution 0.390 0.847 0.181 0.950 sum 3.076 -17.988 -10.360 20.985 Atomic orbital electron populations 1.21741 0.92764 1.02356 1.03918 1.22767 0.96087 0.82817 1.00741 1.86309 1.18281 1.27723 1.87837 1.18909 0.82678 0.92548 0.95486 1.21153 0.94336 0.97723 1.09807 1.20884 0.94223 0.97137 0.98512 1.20912 0.99594 0.92297 1.04242 1.21576 0.93056 0.99553 0.98945 1.18248 0.89696 0.90217 1.04673 1.59629 1.51083 1.07272 1.03393 1.22444 0.99925 0.98097 0.91227 1.22405 0.98185 0.94506 0.90774 1.21239 0.93493 0.94492 1.00690 0.92456 1.21565 0.97302 0.99203 0.99806 1.19123 0.96612 0.93082 0.92200 1.21237 1.12462 1.08377 1.12774 0.92561 1.25018 0.95708 0.98077 0.95746 1.69975 1.32611 1.34608 1.16555 0.86637 0.81634 0.81809 0.78187 1.20743 1.21363 1.19908 0.91233 0.91494 0.90807 0.92582 0.92435 0.85574 0.86087 0.86154 0.85581 0.92100 0.90132 0.95733 0.91389 0.95098 0.93644 0.94348 0.92919 0.96613 0.96978 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.29 -4.18 9.88 -19.76 -0.20 -4.37 16 4 C 0.15 2.17 6.70 -39.08 -0.26 1.90 16 5 C -0.21 -2.46 9.04 -39.47 -0.36 -2.82 16 6 C -0.09 -0.96 10.04 -39.56 -0.40 -1.36 16 7 C -0.15 -1.76 10.04 -39.58 -0.40 -2.16 16 8 C -0.11 -1.52 8.66 -39.41 -0.34 -1.86 16 9 C 0.07 1.02 4.70 -83.56 -0.39 0.63 16 10 N -0.49 -8.24 3.94 -178.79 -0.70 -8.94 16 11 C 0.03 0.45 9.19 60.06 0.55 1.00 16 12 C 0.07 1.26 3.93 -3.82 -0.02 1.24 16 13 C -0.08 -1.71 2.26 -90.62 -0.20 -1.92 16 14 H 0.06 1.22 6.26 -51.93 -0.33 0.90 16 15 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 16 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 17 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 18 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.67 7.14 -52.48 -0.37 1.30 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.25 6.21 -51.93 -0.32 0.93 16 36 H 0.02 0.34 7.35 -51.93 -0.38 -0.04 16 37 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 38 H 0.03 0.57 7.48 -51.93 -0.39 0.19 16 39 H 0.04 0.87 7.75 -51.93 -0.40 0.46 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -31.54 352.77 -8.69 -40.23 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.41 Total: -2.12 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.41 Total: -20.45 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.03 Total: -35.56 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.20 Total: -4.37 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.54 -8.69 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.946 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds