Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46914 * 2 1 4 4 C 1.36006 * 117.00040 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.07916 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01992 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.17968 * 0.02562 * 6 5 4 8 8 C 1.38221 * 120.15675 * 359.97438 * 7 6 5 9 9 C 1.38728 * 119.98329 * 0.02562 * 8 7 6 10 10 N 1.39963 * 120.09000 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00175 * 63.93013 * 10 9 8 12 12 C 1.46902 * 110.99710 * 299.97759 * 10 9 8 13 13 C 1.52999 * 109.47011 * 190.00274 * 12 10 9 14 14 H 1.09005 * 109.47212 * 304.99702 * 13 12 10 15 15 C 1.52998 * 109.47169 * 64.99568 * 13 12 10 16 16 C 1.53004 * 109.47260 * 185.00098 * 13 12 10 17 17 C 1.50696 * 109.47083 * 174.99850 * 16 13 12 18 18 H 1.08007 * 120.00356 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00178 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99245 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46992 * 90.00489 * 21 19 17 23 23 H 1.48496 * 109.46944 * 210.00014 * 21 19 17 24 24 H 1.48496 * 109.46982 * 330.00266 * 21 19 17 25 25 H 1.09010 * 109.46921 * 299.99630 * 1 2 3 26 26 H 1.08993 * 109.47371 * 59.99935 * 1 2 3 27 27 H 1.08997 * 109.46665 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46934 * 240.00851 * 2 1 3 29 29 H 1.08993 * 109.47371 * 120.00065 * 2 1 3 30 30 H 1.08003 * 119.99369 * 359.96020 * 5 4 3 31 31 H 1.07997 * 119.91569 * 179.72615 * 6 5 4 32 32 H 1.07999 * 119.91895 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.01009 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.47070 * 60.00264 * 11 10 9 35 35 H 1.09000 * 109.47020 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.47314 * 299.99906 * 11 10 9 37 37 H 1.08998 * 109.47020 * 310.00024 * 12 10 9 38 38 H 1.08993 * 109.47250 * 70.00458 * 12 10 9 39 39 H 1.08993 * 109.47797 * 300.00182 * 15 13 12 40 40 H 1.09000 * 109.46866 * 60.00436 * 15 13 12 41 41 H 1.09004 * 109.46918 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.46709 * 294.99747 * 16 13 12 43 43 H 1.08991 * 109.47051 * 54.99665 * 16 13 12 44 44 H 0.97000 * 119.99249 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5256 -0.0005 5 6 4.1999 0.4284 -0.0005 6 6 5.5707 0.6111 -0.0016 7 6 6.1018 1.8876 -0.0022 8 6 5.2650 2.9878 -0.0022 9 6 3.8889 2.8122 -0.0011 10 7 3.0396 3.9247 -0.0017 11 6 3.1983 4.7076 -1.2344 12 6 3.2656 4.7601 1.1853 13 6 2.1644 5.8179 1.2817 14 1 2.1236 6.3856 0.3520 15 6 0.8177 5.1319 1.5199 16 6 2.4672 6.7650 2.4446 17 6 1.4510 7.8775 2.4640 18 1 0.6672 7.9061 1.7215 19 6 1.5211 8.8585 3.4304 20 7 2.4752 8.8234 4.3349 21 14 0.2618 10.2381 3.4541 22 1 -0.8940 9.8387 4.2966 23 1 0.8824 11.4651 4.0148 24 1 -0.2039 10.5069 2.0700 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7884 -0.5702 0.0006 31 1 6.2282 -0.2457 0.0029 32 1 7.1729 2.0254 -0.0026 33 1 5.6825 3.9839 -0.0022 34 1 2.9572 4.0834 -2.0949 35 1 2.5273 5.5662 -1.2085 36 1 4.2286 5.0545 -1.3145 37 1 3.2482 4.1351 2.0782 38 1 4.2352 5.2514 1.1046 39 1 0.6019 4.4573 0.6915 40 1 0.8586 4.5643 2.4495 41 1 0.0333 5.8856 1.5890 42 1 2.4204 6.2137 3.3837 43 1 3.4647 7.1861 2.3199 44 1 2.5248 9.5137 5.0146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = -36.639256 kcal Electronic energy + Delta-G solvation = -21833.990410 eV Core-core repulsion = 18750.616366 eV Total energy + Delta-G solvation = -3083.374044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36959 -39.33359 -37.91025 -35.99457 -34.03267 -32.66708 -31.02723 -30.05957 -28.98346 -27.93829 -26.15838 -25.01587 -24.31774 -22.64872 -21.87300 -20.46877 -19.13360 -18.51439 -17.43002 -17.00160 -16.94866 -16.50090 -15.91481 -15.76571 -15.57922 -15.14208 -14.76473 -14.34119 -14.29121 -14.03832 -13.88309 -13.34076 -13.32456 -13.15938 -12.84203 -12.77883 -12.72717 -12.59248 -12.56872 -12.51948 -12.22274 -12.04671 -11.76118 -11.57381 -11.38785 -11.09635 -10.95452 -10.52569 -9.79687 -9.34754 -9.01707 -8.16636 -6.25883 0.29825 0.51577 1.40595 1.41928 1.52929 2.38368 2.42703 2.77511 2.91676 3.16715 3.91177 4.01605 4.05419 4.11427 4.19187 4.25017 4.29501 4.39492 4.42994 4.49522 4.50541 4.59981 4.64432 4.76405 4.85569 4.88179 4.91609 4.94876 4.99121 5.07336 5.25735 5.26986 5.36888 5.42446 5.46596 5.49776 5.54894 5.56952 5.79185 5.86104 5.88682 6.01136 6.25193 6.31968 6.75924 6.89527 7.42245 8.95653 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004029 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.659087 B = 6947.129262 C = 7740.643239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.318 6.318 4 C 0.134 3.866 5 C -0.208 4.208 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.123 4.123 9 C 0.032 3.968 10 N -0.496 5.496 11 C 0.032 3.968 12 C 0.083 3.917 13 C -0.071 4.071 14 H 0.059 0.941 15 C -0.108 4.108 16 C 0.035 3.965 17 C -0.528 4.528 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.962 3.038 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.263 1.263 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.040 0.960 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -20.574 -11.856 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.232 6.232 4 C 0.088 3.912 5 C -0.227 4.227 6 C -0.099 4.099 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.062 4.062 10 N -0.217 5.217 11 C -0.115 4.115 12 C -0.044 4.044 13 C -0.089 4.089 14 H 0.078 0.922 15 C -0.166 4.166 16 C -0.003 4.003 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.187 1.187 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.571 -20.502 -11.708 23.749 hybrid contribution 0.485 1.246 0.529 1.437 sum 3.056 -19.256 -11.179 22.475 Atomic orbital electron populations 1.21775 0.92158 1.03858 1.02767 1.23046 0.96619 0.81349 1.02074 1.86263 1.18547 1.30323 1.88018 1.19115 0.83181 0.92871 0.96082 1.21486 0.94557 0.98129 1.08546 1.21330 0.94374 0.97895 0.96304 1.21232 1.00612 0.92092 1.03274 1.21632 0.92811 1.00240 0.99630 1.18420 0.90266 0.90080 1.07475 1.59509 1.52097 1.07338 1.02744 1.22446 1.00078 0.97884 0.91085 1.22052 0.96749 0.93804 0.91753 1.21041 0.94932 0.94451 0.98508 0.92226 1.21424 0.96270 0.98824 1.00040 1.18991 0.94988 0.93438 0.92868 1.21611 1.12895 1.09080 1.12975 0.92071 1.25953 0.97811 1.00875 0.95235 1.70113 1.34526 1.35721 1.17317 0.85494 0.78857 0.78243 0.78760 1.19921 1.20850 1.18682 0.92791 0.92186 0.87968 0.90730 0.91394 0.82959 0.82559 0.83824 0.86149 0.90818 0.91044 0.95134 0.92813 0.95596 0.91998 0.95107 0.94075 0.99454 0.99494 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.04 0.80 5.46 71.98 0.39 1.20 16 3 O -0.32 -8.96 9.88 -93.62 -0.93 -9.89 16 4 C 0.13 3.72 6.70 22.59 0.15 3.87 16 5 C -0.21 -4.31 9.04 22.34 0.20 -4.10 16 6 C -0.08 -1.48 10.04 22.29 0.22 -1.26 16 7 C -0.15 -3.22 10.04 22.27 0.22 -3.00 16 8 C -0.12 -3.31 8.66 22.38 0.19 -3.12 16 9 C 0.03 0.98 4.70 38.22 0.18 1.16 16 10 N -0.50 -16.78 3.94 -719.58 -2.84 -19.61 16 11 C 0.03 0.95 9.19 127.69 1.17 2.12 16 12 C 0.08 3.23 3.93 86.30 0.34 3.57 16 13 C -0.07 -3.10 2.26 -10.79 -0.02 -3.13 16 14 H 0.06 2.59 6.26 -2.38 -0.01 2.58 16 15 C -0.11 -4.54 8.89 71.98 0.64 -3.90 16 16 C 0.03 1.90 4.45 29.85 0.13 2.04 16 17 C -0.53 -30.63 8.41 25.60 0.22 -30.42 16 18 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 21 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.07 7.66 -2.38 -0.02 1.05 16 29 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 30 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.12 3.25 7.14 -2.91 -0.02 3.23 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.23 6.21 -2.39 -0.01 2.21 16 36 H 0.03 0.86 7.35 -2.39 -0.02 0.84 16 37 H 0.05 2.21 8.06 -2.39 -0.02 2.19 16 38 H 0.03 1.01 7.48 -2.39 -0.02 0.99 16 39 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.04 1.78 6.95 -2.38 -0.02 1.77 16 42 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.26 352.77 4.75 -64.51 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.95 Total: 11.97 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 5.25 Total: -36.27 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.55 Total: -77.64 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.93 Total: -9.89 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.26 4.75 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds