Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.36940 * 120.00130 * 263.92757 * 3 2 1 5 5 H 1.07996 * 120.00007 * 188.71447 * 4 3 2 6 6 C 1.38813 * 119.99684 * 8.70874 * 4 3 2 7 7 N 1.31614 * 120.00148 * 24.98070 * 6 4 3 8 8 Si 1.86804 * 119.99815 * 204.98037 * 6 4 3 9 9 H 1.48501 * 109.47133 * 84.98782 * 8 6 4 10 10 H 1.48497 * 109.46858 * 204.98588 * 8 6 4 11 11 H 1.48495 * 109.47114 * 324.98599 * 8 6 4 12 12 C 1.46505 * 120.00220 * 83.92543 * 3 2 1 13 13 C 1.52997 * 109.47013 * 270.00059 * 12 3 2 14 14 H 1.08993 * 109.47542 * 55.00128 * 13 12 3 15 15 C 1.53001 * 109.47400 * 294.99804 * 13 12 3 16 16 C 1.52999 * 109.47060 * 174.99957 * 13 12 3 17 17 O 1.42898 * 109.47589 * 185.00090 * 16 13 12 18 18 C 1.42898 * 114.00253 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46828 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00406 * 90.00567 * 19 18 17 21 21 C 1.38234 * 120.00036 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00112 * 0.06222 * 21 20 19 23 23 C 1.38235 * 119.99990 * 359.91166 * 22 21 20 24 24 C 1.38232 * 119.99990 * 0.04637 * 23 22 21 25 25 H 1.09007 * 109.46839 * 299.99682 * 1 2 3 26 26 H 1.08999 * 109.47380 * 59.99430 * 1 2 3 27 27 H 1.08994 * 109.47526 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47076 * 239.99796 * 2 1 3 29 29 H 1.09001 * 109.46737 * 120.00191 * 2 1 3 30 30 H 0.97005 * 120.00435 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47013 * 150.00022 * 12 3 2 32 32 H 1.08997 * 109.46803 * 29.99860 * 12 3 2 33 33 H 1.09000 * 109.46674 * 300.00466 * 15 13 12 34 34 H 1.09004 * 109.46954 * 59.99574 * 15 13 12 35 35 H 1.08996 * 109.47170 * 180.02562 * 15 13 12 36 36 H 1.09002 * 109.47214 * 64.99458 * 16 13 12 37 37 H 1.09004 * 109.46917 * 305.00118 * 16 13 12 38 38 H 1.08998 * 109.46853 * 60.00178 * 18 17 16 39 39 H 1.08993 * 109.47045 * 299.99697 * 18 17 16 40 40 H 1.08005 * 119.99481 * 359.69252 * 20 19 18 41 41 H 1.08006 * 119.99499 * 179.97438 * 21 20 19 42 42 H 1.08005 * 119.99452 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99642 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.99655 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3648 1.9849 -1.1793 5 1 2.8551 2.9471 -1.1696 6 6 2.0860 1.3600 -2.3870 7 7 1.1035 0.4878 -2.4653 8 14 3.1054 1.7571 -3.9012 9 1 4.3279 0.9141 -3.9100 10 1 2.3059 1.4823 -5.1221 11 1 3.4926 3.1904 -3.8753 12 6 2.1359 2.1166 1.2616 13 6 0.8245 2.8507 1.5481 14 1 -0.0007 2.1388 1.5354 15 6 0.5933 3.9187 0.4772 16 6 0.9026 3.5163 2.9235 17 8 -0.3610 4.1030 3.2414 18 6 -0.3962 4.7540 4.5130 19 6 -1.7686 5.3326 4.7431 20 6 -2.7435 4.5740 5.3635 21 6 -4.0021 5.1050 5.5750 22 6 -4.2862 6.3942 5.1651 23 6 -3.3112 7.1531 4.5452 24 6 -2.0523 6.6224 4.3344 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.9089 0.0508 -3.3092 31 1 2.9482 2.8396 1.1863 32 1 2.3455 1.4177 2.0713 33 1 1.4186 4.6306 0.4900 34 1 0.5377 3.4445 -0.5027 35 1 -0.3407 4.4419 0.6816 36 1 1.6696 4.2907 2.9094 37 1 1.1554 2.7685 3.6752 38 1 0.3437 5.5541 4.5321 39 1 -0.1708 4.0316 5.2973 40 1 -2.5231 3.5648 5.6788 41 1 -4.7639 4.5121 6.0594 42 1 -5.2698 6.8089 5.3300 43 1 -3.5331 8.1605 4.2253 44 1 -1.2904 7.2154 3.8505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719593394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -2.856416 kcal Electronic energy + Delta-G solvation = -21482.860577 eV Core-core repulsion = 18400.951466 eV Total energy + Delta-G solvation = -3081.909111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44445 -37.86724 -36.37870 -33.46909 -31.78396 -31.01528 -30.68059 -28.96729 -26.43683 -25.99798 -24.69344 -22.91279 -22.69336 -21.41386 -20.45628 -19.28439 -16.99502 -16.83440 -16.14116 -15.94461 -15.46801 -14.88863 -14.69512 -14.15511 -13.81901 -13.52169 -13.35438 -13.10662 -12.89553 -12.77082 -12.26171 -11.83257 -11.75824 -11.44662 -11.40433 -11.14136 -11.06797 -10.91674 -10.79436 -10.60161 -10.28515 -10.20085 -9.92684 -9.67077 -9.48564 -9.36970 -9.17173 -9.03010 -8.92748 -8.26825 -6.81135 -5.69811 -2.99405 1.16569 1.29177 3.43571 3.50725 3.51700 3.53379 4.15967 4.57037 4.70940 4.79046 4.89652 5.00709 5.17607 5.31113 5.39995 5.41607 5.47513 5.54436 5.55408 5.69551 5.85504 5.92444 5.95635 6.06268 6.21395 6.32275 6.37263 6.40265 6.50941 6.62739 6.66719 6.77971 6.86581 6.90213 6.95265 7.03803 7.22156 7.30062 7.42919 7.49287 7.74153 7.85130 8.17863 8.43574 9.31568 9.94809 10.40241 11.34217 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.003319 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.021113 B = 8434.849243 C = 8610.802700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 N -0.593 5.593 4 C -0.241 4.241 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.896 5.896 8 Si 0.893 3.107 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.159 3.841 13 C -0.113 4.113 14 H 0.076 0.924 15 C -0.131 4.131 16 C 0.067 3.933 17 O -0.377 6.377 18 C 0.100 3.900 19 C -0.084 4.084 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.099 4.099 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.016 0.984 28 H 0.087 0.913 29 H 0.001 0.999 30 H 0.250 0.750 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 9.023 15.954 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 N -0.314 5.314 4 C -0.370 4.370 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.542 5.542 8 Si 0.724 3.276 9 H -0.218 1.218 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.031 3.969 13 C -0.135 4.135 14 H 0.094 0.906 15 C -0.188 4.188 16 C -0.010 4.010 17 O -0.296 6.296 18 C 0.023 3.977 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.117 4.117 25 H 0.034 0.966 26 H 0.108 0.892 27 H 0.035 0.965 28 H 0.105 0.895 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.352 8.912 15.664 19.108 hybrid contribution 0.505 0.253 -0.624 0.842 sum -5.847 9.165 15.039 18.557 Atomic orbital electron populations 1.22412 0.99339 0.98024 1.01214 1.20794 0.92464 0.84518 0.98040 1.44237 1.75483 1.10056 1.01663 1.19236 1.30673 1.03530 0.83520 0.90880 1.24697 0.98051 1.00255 0.97176 1.70159 1.27113 1.32200 1.24744 0.86418 0.80487 0.77760 0.82945 1.21777 1.22088 1.20836 1.20742 0.93516 0.93849 0.88792 1.22102 1.02262 0.98044 0.91041 0.90590 1.21654 0.98952 0.97297 1.00898 1.22756 0.84549 0.95628 0.98049 1.88030 1.34157 1.73135 1.34298 1.21258 0.93314 0.95903 0.87203 1.19696 0.95507 0.94317 0.98924 1.21093 0.92965 0.99354 0.98354 1.21141 0.96710 0.95790 1.00640 1.21171 0.99173 0.94659 0.98707 1.21143 0.93453 1.00042 0.99641 1.21094 0.97064 0.95183 0.98387 0.96645 0.89175 0.96453 0.89517 0.98127 0.93915 0.93756 0.94586 0.94650 0.89869 0.94465 0.93939 0.94120 0.92837 0.92867 0.85936 0.86015 0.86167 0.86015 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.53 37.16 0.35 -3.19 16 2 C 0.17 4.04 5.64 -4.04 -0.02 4.02 16 3 N -0.59 -14.45 2.41 -173.24 -0.42 -14.87 16 4 C -0.24 -6.36 7.64 -15.06 -0.12 -6.47 16 5 H 0.07 1.92 7.93 -52.49 -0.42 1.50 16 6 C 0.00 -0.13 4.89 -17.43 -0.09 -0.22 16 7 N -0.90 -24.95 8.59 55.49 0.48 -24.47 16 8 Si 0.89 21.56 29.62 -169.99 -5.04 16.53 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.16 3.23 5.21 -4.04 -0.02 3.21 16 13 C -0.11 -2.17 2.76 -90.62 -0.25 -2.42 16 14 H 0.08 1.62 5.75 -51.93 -0.30 1.32 16 15 C -0.13 -2.65 8.65 37.16 0.32 -2.33 16 16 C 0.07 1.06 5.32 37.16 0.20 1.26 16 17 O -0.38 -6.13 9.86 -35.23 -0.35 -6.47 16 18 C 0.10 1.26 6.06 36.01 0.22 1.48 16 19 C -0.08 -1.05 5.51 -104.62 -0.58 -1.63 16 20 C -0.10 -1.15 9.70 -39.59 -0.38 -1.53 16 21 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 25 H 0.01 0.33 5.93 -51.92 -0.31 0.02 16 26 H 0.09 2.40 6.31 -51.93 -0.33 2.07 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 2.33 5.87 -51.93 -0.30 2.03 16 29 H 0.00 0.01 7.98 -51.93 -0.41 -0.40 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.04 0.68 7.95 -51.93 -0.41 0.26 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.98 6.35 -51.93 -0.33 1.65 16 35 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -28.78 349.81 -9.41 -38.19 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.41 Total: 0.07 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.94 Total: -14.24 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.06 Total: -39.34 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.35 Total: -6.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.04 Total: 16.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.78 -9.41 -38.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719593394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.333 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds