Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47149 * 2 1 4 4 C 1.36940 * 120.00130 * 263.92757 * 3 2 1 5 5 H 1.07996 * 120.00007 * 188.71447 * 4 3 2 6 6 C 1.38813 * 119.99684 * 8.70874 * 4 3 2 7 7 N 1.31614 * 120.00148 * 24.98070 * 6 4 3 8 8 Si 1.86804 * 119.99815 * 204.98037 * 6 4 3 9 9 H 1.48501 * 109.47133 * 84.98782 * 8 6 4 10 10 H 1.48497 * 109.46858 * 204.98588 * 8 6 4 11 11 H 1.48495 * 109.47114 * 324.98599 * 8 6 4 12 12 C 1.46505 * 120.00220 * 83.92543 * 3 2 1 13 13 C 1.52997 * 109.47013 * 270.00059 * 12 3 2 14 14 H 1.08993 * 109.47542 * 55.00128 * 13 12 3 15 15 C 1.53001 * 109.47400 * 294.99804 * 13 12 3 16 16 C 1.52999 * 109.47060 * 174.99957 * 13 12 3 17 17 O 1.42898 * 109.47589 * 185.00090 * 16 13 12 18 18 C 1.42898 * 114.00253 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46828 * 180.02562 * 18 17 16 20 20 C 1.38232 * 120.00406 * 90.00567 * 19 18 17 21 21 C 1.38234 * 120.00036 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00112 * 0.06222 * 21 20 19 23 23 C 1.38235 * 119.99990 * 359.91166 * 22 21 20 24 24 C 1.38232 * 119.99990 * 0.04637 * 23 22 21 25 25 H 1.09007 * 109.46839 * 299.99682 * 1 2 3 26 26 H 1.08999 * 109.47380 * 59.99430 * 1 2 3 27 27 H 1.08994 * 109.47526 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47076 * 239.99796 * 2 1 3 29 29 H 1.09001 * 109.46737 * 120.00191 * 2 1 3 30 30 H 0.97005 * 120.00435 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47013 * 150.00022 * 12 3 2 32 32 H 1.08997 * 109.46803 * 29.99860 * 12 3 2 33 33 H 1.09000 * 109.46674 * 300.00466 * 15 13 12 34 34 H 1.09004 * 109.46954 * 59.99574 * 15 13 12 35 35 H 1.08996 * 109.47170 * 180.02562 * 15 13 12 36 36 H 1.09002 * 109.47214 * 64.99458 * 16 13 12 37 37 H 1.09004 * 109.46917 * 305.00118 * 16 13 12 38 38 H 1.08998 * 109.46853 * 60.00178 * 18 17 16 39 39 H 1.08993 * 109.47045 * 299.99697 * 18 17 16 40 40 H 1.08005 * 119.99481 * 359.69252 * 20 19 18 41 41 H 1.08006 * 119.99499 * 179.97438 * 21 20 19 42 42 H 1.08005 * 119.99452 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99642 * 180.02562 * 23 22 21 44 44 H 1.07996 * 119.99655 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3648 1.9849 -1.1793 5 1 2.8551 2.9471 -1.1696 6 6 2.0860 1.3600 -2.3870 7 7 1.1035 0.4878 -2.4653 8 14 3.1054 1.7571 -3.9012 9 1 4.3279 0.9141 -3.9100 10 1 2.3059 1.4823 -5.1221 11 1 3.4926 3.1904 -3.8753 12 6 2.1359 2.1166 1.2616 13 6 0.8245 2.8507 1.5481 14 1 -0.0007 2.1388 1.5354 15 6 0.5933 3.9187 0.4772 16 6 0.9026 3.5163 2.9235 17 8 -0.3610 4.1030 3.2414 18 6 -0.3962 4.7540 4.5130 19 6 -1.7686 5.3326 4.7431 20 6 -2.7435 4.5740 5.3635 21 6 -4.0021 5.1050 5.5750 22 6 -4.2862 6.3942 5.1651 23 6 -3.3112 7.1531 4.5452 24 6 -2.0523 6.6224 4.3344 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.9089 0.0508 -3.3092 31 1 2.9482 2.8396 1.1863 32 1 2.3455 1.4177 2.0713 33 1 1.4186 4.6306 0.4900 34 1 0.5377 3.4445 -0.5027 35 1 -0.3407 4.4419 0.6816 36 1 1.6696 4.2907 2.9094 37 1 1.1554 2.7685 3.6752 38 1 0.3437 5.5541 4.5321 39 1 -0.1708 4.0316 5.2973 40 1 -2.5231 3.5648 5.6788 41 1 -4.7639 4.5121 6.0594 42 1 -5.2698 6.8089 5.3300 43 1 -3.5331 8.1605 4.2253 44 1 -1.2904 7.2154 3.8505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719593394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -16.271478 kcal Electronic energy + Delta-G solvation = -21483.442298 eV Core-core repulsion = 18400.951466 eV Total energy + Delta-G solvation = -3082.490831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29650 -39.17114 -37.98072 -35.06675 -32.96742 -32.40816 -31.79283 -30.82849 -27.85547 -27.38266 -26.10203 -24.74194 -23.47899 -22.33537 -22.23385 -20.85808 -18.69743 -17.83058 -17.45554 -17.00457 -16.68824 -16.34201 -15.92931 -15.50306 -15.37250 -15.04100 -14.66687 -14.32437 -14.20711 -13.80329 -13.61791 -13.38729 -13.37039 -13.04903 -12.86479 -12.79718 -12.70865 -12.45074 -12.09674 -11.95958 -11.89471 -11.88171 -11.56142 -11.44959 -11.35217 -11.00867 -10.49933 -10.27598 -9.82641 -9.75569 -8.76576 -7.73756 -5.03534 0.34630 0.49578 1.50253 1.53644 1.59202 2.56377 2.64944 3.16029 3.36124 3.75099 3.92060 3.95612 4.08238 4.15256 4.26970 4.33799 4.35259 4.41029 4.47625 4.64797 4.65433 4.70756 4.74603 4.77487 4.83925 4.98394 5.07865 5.10868 5.15221 5.16888 5.22256 5.26008 5.35743 5.54519 5.60085 5.61405 5.67911 5.68189 5.70613 5.86531 6.09832 6.19069 6.33648 6.43818 7.28575 8.00668 8.41056 9.28621 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.003319 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.021113 B = 8434.849243 C = 8610.802700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 N -0.607 5.607 4 C -0.238 4.238 5 H 0.072 0.928 6 C -0.054 4.054 7 N -0.918 5.918 8 Si 0.949 3.051 9 H -0.291 1.291 10 H -0.303 1.303 11 H -0.276 1.276 12 C 0.157 3.843 13 C -0.105 4.105 14 H 0.052 0.948 15 C -0.119 4.119 16 C 0.076 3.924 17 O -0.402 6.402 18 C 0.098 3.902 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.116 4.116 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.243 0.757 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 10.042 17.760 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 N -0.329 5.329 4 C -0.368 4.368 5 H 0.090 0.910 6 C -0.249 4.249 7 N -0.566 5.566 8 Si 0.779 3.221 9 H -0.219 1.219 10 H -0.230 1.230 11 H -0.201 1.201 12 C 0.030 3.970 13 C -0.126 4.126 14 H 0.070 0.930 15 C -0.176 4.176 16 C -0.001 4.001 17 O -0.323 6.323 18 C 0.022 3.978 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.134 4.134 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.352 9.953 17.501 21.111 hybrid contribution 0.445 -0.003 -1.095 1.182 sum -5.906 9.949 16.406 20.076 Atomic orbital electron populations 1.22191 0.99014 0.98394 0.99846 1.20683 0.92671 0.84688 0.97590 1.44407 1.75590 1.10417 1.02445 1.19414 1.29691 1.03258 0.84457 0.90988 1.25291 0.99062 1.01102 0.99430 1.70319 1.28204 1.33444 1.24623 0.85536 0.78827 0.77679 0.80020 1.21896 1.22981 1.20132 1.20888 0.94164 0.94299 0.87627 1.21850 1.00531 0.97250 0.92990 0.92966 1.21490 0.99456 0.97550 0.99126 1.22547 0.85000 0.96430 0.96098 1.87977 1.34250 1.73656 1.36376 1.21419 0.94033 0.96406 0.85902 1.19851 0.95827 0.94988 1.00115 1.21313 0.93557 0.99787 0.98723 1.21474 0.96733 0.96342 1.00380 1.21553 1.00227 0.94469 0.97741 1.21472 0.93062 1.01135 0.99301 1.21309 0.98009 0.95256 0.98834 0.95731 0.92631 0.95176 0.92464 0.95866 0.94755 0.93010 0.92505 0.93547 0.93933 0.94398 0.92399 0.92237 0.91575 0.91479 0.85369 0.83891 0.83601 0.83945 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.36 9.53 71.98 0.69 -5.68 16 2 C 0.17 8.14 5.64 86.38 0.49 8.63 16 3 N -0.61 -29.30 2.41 -702.01 -1.70 -31.00 16 4 C -0.24 -12.62 7.64 84.03 0.64 -11.98 16 5 H 0.07 3.76 7.93 -2.91 -0.02 3.74 16 6 C -0.05 -2.98 4.89 84.86 0.42 -2.56 16 7 N -0.92 -52.40 8.59 21.65 0.19 -52.22 16 8 Si 0.95 44.96 29.62 68.60 2.03 46.99 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.16 6.10 5.21 86.38 0.45 6.55 16 13 C -0.11 -3.90 2.76 -10.79 -0.03 -3.93 16 14 H 0.05 2.20 5.75 -2.39 -0.01 2.18 16 15 C -0.12 -4.79 8.65 71.98 0.62 -4.16 16 16 C 0.08 2.22 5.32 71.98 0.38 2.60 16 17 O -0.40 -12.45 9.86 -148.98 -1.47 -13.92 16 18 C 0.10 2.31 6.06 71.24 0.43 2.74 16 19 C -0.11 -2.56 5.51 -19.86 -0.11 -2.67 16 20 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 21 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 22 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 25 H 0.02 1.07 5.93 -2.38 -0.01 1.06 16 26 H 0.05 3.02 6.31 -2.39 -0.02 3.01 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 3.11 5.87 -2.39 -0.01 3.10 16 29 H 0.02 1.00 7.98 -2.39 -0.02 0.98 16 30 H 0.24 13.72 8.31 -92.70 -0.77 12.95 16 31 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 32 H 0.06 1.98 7.95 -2.39 -0.02 1.96 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 2.05 6.35 -2.38 -0.02 2.03 16 35 H 0.04 1.48 7.82 -2.39 -0.02 1.46 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 39 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -62.07 349.81 5.08 -56.99 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.95 Total: 14.57 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 5.08 Total: -21.42 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.51 Total: -83.22 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.47 Total: -13.92 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.07 5.08 -56.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719593394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.721 kcal (2) G-P(sol) polarization free energy of solvation -62.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds