Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47303 * 2 1 4 4 C 1.36933 * 120.00041 * 269.59763 * 3 2 1 5 5 H 1.07993 * 120.00447 * 325.48385 * 4 3 2 6 6 C 1.38818 * 119.99730 * 145.47910 * 4 3 2 7 7 N 1.31619 * 119.99840 * 337.23290 * 6 4 3 8 8 Si 1.86796 * 119.99849 * 157.22769 * 6 4 3 9 9 H 1.48501 * 109.46988 * 60.00405 * 8 6 4 10 10 H 1.48502 * 109.47065 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47377 * 300.00329 * 8 6 4 12 12 C 1.46500 * 119.99704 * 89.60289 * 3 2 1 13 13 C 1.53004 * 109.47535 * 89.99844 * 12 3 2 14 14 H 1.09004 * 109.46676 * 305.00229 * 13 12 3 15 15 C 1.53002 * 109.46777 * 64.99654 * 13 12 3 16 16 C 1.52991 * 109.47212 * 184.99669 * 13 12 3 17 17 O 1.42900 * 109.47152 * 174.99830 * 16 13 12 18 18 C 1.42898 * 114.00355 * 179.97438 * 17 16 13 19 19 C 1.50692 * 109.47377 * 180.02562 * 18 17 16 20 20 C 1.38241 * 120.00177 * 90.00251 * 19 18 17 21 21 C 1.38235 * 120.00276 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99910 * 0.07326 * 21 20 19 23 23 C 1.38232 * 120.00022 * 359.90589 * 22 21 20 24 24 C 1.38234 * 120.00192 * 0.05001 * 23 22 21 25 25 H 1.08995 * 109.47154 * 299.99671 * 1 2 3 26 26 H 1.08995 * 109.46892 * 59.99650 * 1 2 3 27 27 H 1.09004 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47276 * 239.99844 * 2 1 3 29 29 H 1.09003 * 109.46875 * 120.00623 * 2 1 3 30 30 H 0.97005 * 119.99383 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47462 * 330.00000 * 12 3 2 32 32 H 1.09000 * 109.46832 * 210.00215 * 12 3 2 33 33 H 1.09000 * 109.47173 * 179.97438 * 15 13 12 34 34 H 1.08998 * 109.47345 * 300.00551 * 15 13 12 35 35 H 1.09002 * 109.46739 * 60.00366 * 15 13 12 36 36 H 1.09005 * 109.46985 * 55.00073 * 16 13 12 37 37 H 1.08997 * 109.47783 * 295.00316 * 16 13 12 38 38 H 1.09013 * 109.46663 * 60.00576 * 18 17 16 39 39 H 1.08996 * 109.47458 * 300.00773 * 18 17 16 40 40 H 1.07997 * 119.99335 * 359.70513 * 20 19 18 41 41 H 1.08002 * 119.99728 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.99269 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99712 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00381 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2545 2.0239 -1.1858 5 1 2.6273 1.4707 -2.0351 6 6 2.0145 3.3867 -1.2964 7 7 1.1726 3.9755 -0.4737 8 14 2.8865 4.3848 -2.6127 9 1 2.5370 3.8491 -3.9529 10 1 2.4613 5.8046 -2.5203 11 1 4.3549 4.2943 -2.4110 12 6 2.2543 2.0746 1.2687 13 6 3.6963 1.8352 1.7205 14 1 3.8887 0.7634 1.7687 15 6 4.6578 2.4815 0.7211 16 6 3.9068 2.4540 3.1038 17 8 5.2162 2.1308 3.5760 18 6 5.5167 2.6642 4.8672 19 6 6.9146 2.2644 5.2631 20 6 7.9848 3.0753 4.9342 21 6 9.2671 2.7089 5.2978 22 6 9.4795 1.5307 5.9889 23 6 8.4094 0.7200 6.3182 24 6 7.1270 1.0869 5.9554 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.0053 4.9279 -0.5507 31 1 1.5685 1.6923 2.0248 32 1 2.0881 3.1436 1.1348 33 1 5.6851 2.3114 1.0431 34 1 4.5078 2.0408 -0.2645 35 1 4.4653 3.5533 0.6729 36 1 3.1632 2.0583 3.7957 37 1 3.8014 3.5368 3.0375 38 1 4.8064 2.2732 5.5960 39 1 5.4448 3.7513 4.8370 40 1 7.8193 3.9930 4.3894 41 1 10.1032 3.3423 5.0404 42 1 10.4815 1.2443 6.2726 43 1 8.5754 -0.2003 6.8586 44 1 6.2908 0.4537 6.2130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719593396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -14.191725 kcal Electronic energy + Delta-G solvation = -21468.666273 eV Core-core repulsion = 18386.265627 eV Total energy + Delta-G solvation = -3082.400646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40889 -37.74993 -36.24979 -33.17385 -31.76421 -31.56866 -30.99282 -28.53925 -26.34218 -26.00346 -24.63499 -23.18127 -22.66823 -21.37511 -20.56343 -19.02171 -17.00622 -16.79084 -15.91716 -15.87642 -15.44608 -14.83699 -14.58060 -14.30451 -13.87852 -13.59143 -13.50498 -12.98575 -12.87440 -12.71397 -12.30447 -12.14866 -11.87825 -11.57306 -11.15773 -11.08634 -11.00749 -10.94160 -10.83262 -10.63522 -10.29092 -10.13158 -9.94742 -9.77510 -9.65184 -9.55423 -9.24453 -9.00910 -8.90141 -8.41191 -6.54423 -5.73434 -3.25953 1.19212 1.31219 3.39636 3.45590 3.49079 3.56204 4.21837 4.53741 4.74118 4.82466 4.92352 5.03727 5.22756 5.36313 5.38415 5.47094 5.55860 5.57748 5.65649 5.83372 5.88406 5.95130 6.04589 6.17096 6.29319 6.34628 6.39048 6.41604 6.48648 6.54540 6.57292 6.64062 6.72393 6.88902 7.01698 7.02445 7.09545 7.12009 7.30955 7.46907 7.56585 7.78493 7.86796 8.55829 9.24262 9.88592 10.45543 11.26639 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.003785 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.693793 B = 7396.279116 C = 8181.564231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.250 4.250 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.102 4.102 14 H 0.057 0.943 15 C -0.124 4.124 16 C 0.069 3.931 17 O -0.379 6.379 18 C 0.099 3.901 19 C -0.082 4.082 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.100 4.100 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.101 0.899 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.992 -3.254 13.326 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.380 4.380 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.123 4.123 14 H 0.075 0.925 15 C -0.181 4.181 16 C -0.008 4.008 17 O -0.299 6.299 18 C 0.022 3.978 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.118 4.118 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.037 -3.198 13.204 17.504 hybrid contribution 0.195 0.786 -0.468 0.935 sum 11.232 -2.412 12.736 17.152 Atomic orbital electron populations 1.22280 0.99855 0.98234 1.01812 1.20861 0.91844 0.87678 0.98070 1.43781 1.74383 1.09862 1.02199 1.18948 1.36851 0.91406 0.90747 0.92254 1.25000 0.97261 0.98557 0.97867 1.69975 1.32925 1.10389 1.39790 0.86602 0.80346 0.79353 0.81998 1.20849 1.21709 1.20700 1.20907 0.88918 1.01897 0.85903 1.21833 1.00487 0.99066 0.90950 0.92502 1.21594 0.96288 0.99903 1.00309 1.22702 0.82507 0.99041 0.96535 1.87995 1.34057 1.75776 1.32024 1.21256 0.92293 0.97676 0.86533 1.19714 0.94755 0.95406 0.98371 1.21116 0.92264 0.99873 0.98487 1.21144 0.96877 0.97154 0.99098 1.21161 0.98852 0.94944 0.98849 1.21131 0.92720 0.99788 1.00700 1.21091 0.97262 0.95644 0.97838 0.93924 0.92726 0.95225 0.94076 0.95017 0.93670 0.96182 0.88182 0.95017 0.90812 0.94091 0.94149 0.93573 0.92866 0.92775 0.85883 0.86034 0.86207 0.86060 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 37.16 0.38 -2.90 16 2 C 0.14 3.03 6.39 -4.04 -0.03 3.00 16 3 N -0.58 -14.25 2.32 -173.23 -0.40 -14.65 16 4 C -0.25 -6.66 7.42 -15.06 -0.11 -6.77 16 5 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.99 11.34 55.49 0.63 -24.36 16 8 Si 0.89 21.41 29.61 -169.99 -5.03 16.38 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.15 3.47 4.80 -4.04 -0.02 3.46 16 13 C -0.10 -2.09 2.83 -90.62 -0.26 -2.35 16 14 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 15 C -0.12 -2.66 8.64 37.16 0.32 -2.34 16 16 C 0.07 1.21 5.32 37.15 0.20 1.41 16 17 O -0.38 -6.49 9.86 -35.23 -0.35 -6.84 16 18 C 0.10 1.34 6.06 36.00 0.22 1.56 16 19 C -0.08 -1.06 5.51 -104.62 -0.58 -1.64 16 20 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 24 C -0.10 -1.17 9.70 -39.58 -0.38 -1.56 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 29 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.10 2.61 5.34 -51.93 -0.28 2.33 16 33 H 0.03 0.63 7.82 -51.93 -0.41 0.23 16 34 H 0.07 1.73 6.35 -51.93 -0.33 1.40 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.64 8.09 -51.92 -0.42 0.22 16 39 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -29.02 359.55 -9.39 -38.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.73 Total: 0.07 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.92 Total: -14.43 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.23 Total: -39.01 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.35 Total: -6.84 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.02 -9.39 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719593396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.223 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds