Wall clock time and date at job start Mon Mar 30 2020 01:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47597 * 2 1 4 4 C 1.53006 * 109.46743 * 120.00287 * 2 1 3 5 5 C 1.50703 * 109.46602 * 195.11020 * 4 2 1 6 6 H 1.07992 * 120.00393 * 5.66892 * 5 4 2 7 7 C 1.37885 * 119.99540 * 185.66920 * 5 4 2 8 8 N 1.31506 * 120.00283 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99341 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47066 * 90.00595 * 9 7 5 11 11 H 1.48502 * 109.46658 * 209.99913 * 9 7 5 12 12 H 1.48491 * 109.47418 * 329.99832 * 9 7 5 13 13 N 1.46899 * 109.46874 * 239.99826 * 2 1 3 14 14 C 1.46899 * 111.00149 * 289.15094 * 13 2 1 15 15 C 1.46905 * 110.99678 * 165.20010 * 13 2 1 16 16 C 1.52998 * 109.46747 * 286.32086 * 15 13 2 17 17 C 1.52993 * 109.47404 * 303.94030 * 16 15 13 18 18 O 1.42900 * 109.47205 * 63.94323 * 16 15 13 19 19 C 1.50704 * 109.47051 * 183.94135 * 16 15 13 20 20 C 1.38231 * 120.00297 * 210.00245 * 19 16 15 21 21 C 1.38230 * 119.99966 * 179.97438 * 20 19 16 22 22 C 1.38236 * 120.00274 * 359.97438 * 21 20 19 23 23 C 1.38228 * 119.99842 * 0.28205 * 22 21 20 24 24 C 1.38237 * 119.99756 * 30.02434 * 19 16 15 25 25 H 1.09001 * 109.46934 * 299.99807 * 1 2 3 26 26 H 1.09000 * 109.46998 * 59.99915 * 1 2 3 27 27 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47176 * 315.10930 * 4 2 1 29 29 H 1.09003 * 109.47067 * 75.11208 * 4 2 1 30 30 H 0.96999 * 120.00579 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47435 * 289.23082 * 14 13 2 32 32 H 1.09002 * 109.47367 * 49.23164 * 14 13 2 33 33 H 1.09002 * 109.46948 * 169.22496 * 14 13 2 34 34 H 1.09002 * 109.46683 * 166.32795 * 15 13 2 35 35 H 1.08996 * 109.46949 * 46.32341 * 15 13 2 36 36 H 1.08998 * 109.47867 * 305.07706 * 17 16 15 37 37 H 1.09003 * 109.47008 * 65.08030 * 17 16 15 38 38 H 1.09004 * 109.47356 * 185.07671 * 17 16 15 39 39 H 0.96702 * 113.99928 * 59.99817 * 18 16 15 40 40 H 1.07997 * 119.99875 * 359.97438 * 20 19 16 41 41 H 1.08007 * 120.00136 * 180.02562 * 21 20 19 42 42 H 1.08006 * 120.00105 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.00219 * 179.72627 * 23 22 21 44 44 H 1.08003 * 120.00412 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5007 -0.4088 1.4486 6 1 3.9912 0.3100 0.8092 7 6 4.2107 -1.0406 2.4475 8 7 3.6132 -1.9156 3.2265 9 14 6.0212 -0.6526 2.6951 10 1 6.1595 0.4748 3.6516 11 1 6.7142 -1.8491 3.2367 12 1 6.6290 -0.2752 1.3939 13 7 2.0196 -0.6925 -1.1994 14 6 1.7709 -2.1376 -1.1114 15 6 3.4452 -0.4163 -1.4217 16 6 3.6129 1.0137 -1.9391 17 6 2.7724 1.2003 -3.2038 18 8 3.1788 1.9365 -0.9381 19 6 5.0640 1.2653 -2.2588 20 6 5.5872 2.5392 -2.1399 21 6 6.9183 2.7698 -2.4326 22 6 7.7265 1.7264 -2.8438 23 6 7.2020 0.4535 -2.9679 24 6 5.8718 0.2221 -2.6715 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.4746 -0.3859 2.1187 29 1 1.9121 -1.7968 1.1255 30 1 4.1126 -2.3598 3.9295 31 1 2.4307 -2.5749 -0.3620 32 1 0.7330 -2.3111 -0.8271 33 1 1.9643 -2.5993 -2.0797 34 1 3.8408 -1.1174 -2.1566 35 1 3.9878 -0.5291 -0.4831 36 1 3.0416 0.4381 -3.9350 37 1 1.7153 1.1073 -2.9545 38 1 2.9611 2.1887 -3.6230 39 1 3.6690 1.8745 -0.1069 40 1 4.9560 3.3544 -1.8182 41 1 7.3273 3.7651 -2.3393 42 1 8.7666 1.9066 -3.0722 43 1 7.8323 -0.3608 -3.2934 44 1 5.4631 -0.7733 -2.7644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823605568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:10 Heat of formation + Delta-G solvation = -12.924067 kcal Electronic energy + Delta-G solvation = -23272.876805 eV Core-core repulsion = 20190.531128 eV Total energy + Delta-G solvation = -3082.345677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82719 -37.99867 -35.85026 -32.91927 -32.28351 -30.68806 -30.38323 -28.93886 -27.66363 -26.33446 -24.15214 -23.08662 -22.56641 -21.74358 -19.80570 -18.64364 -17.27526 -16.56054 -15.96175 -15.26085 -15.01480 -14.58100 -14.42151 -14.29266 -13.71279 -13.59958 -13.12644 -12.86154 -12.46486 -12.27160 -12.16763 -11.92553 -11.72870 -11.68715 -11.53573 -11.23304 -11.15171 -11.06767 -10.74076 -10.67015 -10.50990 -10.45252 -10.10986 -9.94945 -9.67188 -9.08745 -8.77570 -8.72501 -8.48185 -8.39509 -7.08363 -6.09094 -4.09619 1.53495 1.59535 3.23976 3.31692 3.34329 3.97498 4.36341 4.60450 4.76849 5.10033 5.12498 5.17618 5.25393 5.36896 5.54127 5.64306 5.76083 5.79664 5.98225 6.02607 6.13001 6.18157 6.22312 6.28836 6.33289 6.38841 6.43439 6.46362 6.61594 6.67282 6.68837 6.74564 6.83983 6.88162 6.95873 7.07746 7.18835 7.20981 7.53985 7.62294 7.85533 8.09956 8.18580 8.19870 8.36513 8.94758 9.51077 11.01181 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.008578 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.137645 B = 3263.316365 C = 4601.729119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 H 0.108 0.892 4 C -0.010 4.010 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.520 5.520 14 C 0.022 3.978 15 C -0.004 4.004 16 C 0.182 3.818 17 C -0.117 4.117 18 O -0.548 6.548 19 C -0.102 4.102 20 C -0.105 4.105 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.109 4.109 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.011 0.989 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.381 0.619 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 5.097 -11.892 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 H 0.125 0.875 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.705 3.295 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.243 5.243 14 C -0.126 4.126 15 C -0.132 4.132 16 C 0.141 3.859 17 C -0.174 4.174 18 O -0.357 6.357 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.127 4.127 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.232 0.768 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.473 5.315 -12.610 13.906 hybrid contribution 2.030 -0.540 1.462 2.560 sum 4.503 4.775 -11.148 12.936 Atomic orbital electron populations 1.21786 0.97176 1.00289 0.99958 1.22366 0.93013 1.00871 0.89293 0.87504 1.19825 0.95573 0.96740 0.92711 1.21228 0.95322 1.23737 1.15144 0.92198 1.25005 0.97895 0.95196 0.95938 1.69951 1.36229 1.27018 1.19396 0.86802 0.85850 0.78019 0.78779 1.20558 1.21263 1.19549 1.62342 1.15412 1.08234 1.38331 1.22320 1.01051 0.89757 0.99510 1.23405 0.91715 0.94422 1.03652 1.19929 0.87511 0.89286 0.89180 1.21543 1.01374 1.00266 0.94253 1.86431 1.62665 1.60432 1.26165 1.20712 0.96943 0.93662 0.98988 1.21028 0.95192 0.96878 0.99252 1.21105 0.94122 0.98845 1.00269 1.21091 0.99439 0.93312 1.00739 1.21114 0.95499 0.96894 1.00686 1.21179 0.93696 0.99027 0.98823 0.93422 0.93733 0.94013 0.97042 0.95498 0.92973 0.94022 0.92365 0.93641 0.92290 0.87547 0.92234 0.90315 0.93628 0.76782 0.85497 0.86438 0.86608 0.86390 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.18 37.16 0.34 -2.11 16 2 C 0.05 1.05 2.37 -67.71 -0.16 0.89 16 3 H 0.11 2.22 4.41 -51.93 -0.23 1.99 16 4 C -0.01 -0.26 4.21 -27.88 -0.12 -0.37 16 5 C -0.52 -13.20 6.99 -34.44 -0.24 -13.44 16 6 H 0.06 1.44 3.84 -52.49 -0.20 1.24 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.52 -9.73 3.79 -234.88 -0.89 -10.62 16 14 C 0.02 0.41 8.37 60.06 0.50 0.91 16 15 C 0.00 -0.07 3.38 -3.82 -0.01 -0.09 16 16 C 0.18 2.99 0.98 -91.77 -0.09 2.90 16 17 C -0.12 -1.77 8.54 37.15 0.32 -1.45 16 18 O -0.55 -9.58 8.93 -35.23 -0.31 -9.90 16 19 C -0.10 -1.61 4.81 -104.62 -0.50 -2.11 16 20 C -0.11 -1.55 9.35 -39.59 -0.37 -1.92 16 21 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 16 22 C -0.13 -1.65 10.05 -39.59 -0.40 -2.04 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 24 C -0.11 -1.65 9.14 -39.58 -0.36 -2.01 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.75 6.54 -51.93 -0.34 0.41 16 28 H 0.01 0.30 8.05 -51.93 -0.42 -0.12 16 29 H 0.03 0.71 5.68 -51.93 -0.29 0.41 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.88 6.56 -51.93 -0.34 0.54 16 32 H 0.06 1.04 6.32 -51.93 -0.33 0.71 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.01 6.10 -51.93 -0.32 0.69 16 35 H 0.11 2.30 3.79 -51.93 -0.20 2.10 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.38 6.79 6.77 45.56 0.31 7.10 16 40 H 0.13 1.78 7.48 -52.49 -0.39 1.39 16 41 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.13 1.80 6.08 -52.48 -0.32 1.48 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -28.27 332.25 -8.45 -36.72 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.98 Total: 11.36 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.99 Total: -23.41 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.15 Total: -35.55 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.31 Total: -9.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.27 -8.45 -36.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823605568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.798 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds