Wall clock time and date at job start Mon Mar 30 2020 01:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47597 * 2 1 4 4 C 1.53006 * 109.46743 * 120.00287 * 2 1 3 5 5 C 1.50703 * 109.46602 * 195.11020 * 4 2 1 6 6 H 1.07992 * 120.00393 * 5.66892 * 5 4 2 7 7 C 1.37885 * 119.99540 * 185.66920 * 5 4 2 8 8 N 1.31506 * 120.00283 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99341 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47066 * 90.00595 * 9 7 5 11 11 H 1.48502 * 109.46658 * 209.99913 * 9 7 5 12 12 H 1.48491 * 109.47418 * 329.99832 * 9 7 5 13 13 N 1.46899 * 109.46874 * 239.99826 * 2 1 3 14 14 C 1.46899 * 111.00149 * 289.15094 * 13 2 1 15 15 C 1.46905 * 110.99678 * 165.20010 * 13 2 1 16 16 C 1.52998 * 109.46747 * 286.32086 * 15 13 2 17 17 C 1.52993 * 109.47404 * 303.94030 * 16 15 13 18 18 O 1.42900 * 109.47205 * 63.94323 * 16 15 13 19 19 C 1.50704 * 109.47051 * 183.94135 * 16 15 13 20 20 C 1.38231 * 120.00297 * 210.00245 * 19 16 15 21 21 C 1.38230 * 119.99966 * 179.97438 * 20 19 16 22 22 C 1.38236 * 120.00274 * 359.97438 * 21 20 19 23 23 C 1.38228 * 119.99842 * 0.28205 * 22 21 20 24 24 C 1.38237 * 119.99756 * 30.02434 * 19 16 15 25 25 H 1.09001 * 109.46934 * 299.99807 * 1 2 3 26 26 H 1.09000 * 109.46998 * 59.99915 * 1 2 3 27 27 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47176 * 315.10930 * 4 2 1 29 29 H 1.09003 * 109.47067 * 75.11208 * 4 2 1 30 30 H 0.96999 * 120.00579 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47435 * 289.23082 * 14 13 2 32 32 H 1.09002 * 109.47367 * 49.23164 * 14 13 2 33 33 H 1.09002 * 109.46948 * 169.22496 * 14 13 2 34 34 H 1.09002 * 109.46683 * 166.32795 * 15 13 2 35 35 H 1.08996 * 109.46949 * 46.32341 * 15 13 2 36 36 H 1.08998 * 109.47867 * 305.07706 * 17 16 15 37 37 H 1.09003 * 109.47008 * 65.08030 * 17 16 15 38 38 H 1.09004 * 109.47356 * 185.07671 * 17 16 15 39 39 H 0.96702 * 113.99928 * 59.99817 * 18 16 15 40 40 H 1.07997 * 119.99875 * 359.97438 * 20 19 16 41 41 H 1.08007 * 120.00136 * 180.02562 * 21 20 19 42 42 H 1.08006 * 120.00105 * 180.02562 * 22 21 20 43 43 H 1.07999 * 120.00219 * 179.72627 * 23 22 21 44 44 H 1.08003 * 120.00412 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 3.5007 -0.4088 1.4486 6 1 3.9912 0.3100 0.8092 7 6 4.2107 -1.0406 2.4475 8 7 3.6132 -1.9156 3.2265 9 14 6.0212 -0.6526 2.6951 10 1 6.1595 0.4748 3.6516 11 1 6.7142 -1.8491 3.2367 12 1 6.6290 -0.2752 1.3939 13 7 2.0196 -0.6925 -1.1994 14 6 1.7709 -2.1376 -1.1114 15 6 3.4452 -0.4163 -1.4217 16 6 3.6129 1.0137 -1.9391 17 6 2.7724 1.2003 -3.2038 18 8 3.1788 1.9365 -0.9381 19 6 5.0640 1.2653 -2.2588 20 6 5.5872 2.5392 -2.1399 21 6 6.9183 2.7698 -2.4326 22 6 7.7265 1.7264 -2.8438 23 6 7.2020 0.4535 -2.9679 24 6 5.8718 0.2221 -2.6715 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.4746 -0.3859 2.1187 29 1 1.9121 -1.7968 1.1255 30 1 4.1126 -2.3598 3.9295 31 1 2.4307 -2.5749 -0.3620 32 1 0.7330 -2.3111 -0.8271 33 1 1.9643 -2.5993 -2.0797 34 1 3.8408 -1.1174 -2.1566 35 1 3.9878 -0.5291 -0.4831 36 1 3.0416 0.4381 -3.9350 37 1 1.7153 1.1073 -2.9545 38 1 2.9611 2.1887 -3.6230 39 1 3.6690 1.8745 -0.1069 40 1 4.9560 3.3544 -1.8182 41 1 7.3273 3.7651 -2.3393 42 1 8.7666 1.9066 -3.0722 43 1 7.8323 -0.3608 -3.2934 44 1 5.4631 -0.7733 -2.7644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823605568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:10 Heat of formation + Delta-G solvation = -29.352549 kcal Electronic energy + Delta-G solvation = -23273.589198 eV Core-core repulsion = 20190.531128 eV Total energy + Delta-G solvation = -3083.058069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09259 -39.35230 -37.26387 -34.83747 -33.71694 -31.92681 -31.70332 -30.13956 -29.52972 -27.83048 -25.64879 -24.80640 -23.79514 -22.97677 -21.09294 -20.28911 -18.55326 -18.45554 -17.17968 -16.87814 -16.55149 -16.11213 -15.83907 -15.50098 -15.09458 -14.88635 -14.59395 -14.19773 -14.07583 -13.77804 -13.51351 -13.38369 -13.14775 -13.10670 -12.99003 -12.84980 -12.61087 -12.50999 -12.38283 -12.34661 -11.97654 -11.96494 -11.67441 -11.47941 -11.31682 -10.94363 -10.54432 -10.23485 -9.78146 -9.59837 -8.74622 -8.17663 -6.22146 0.46722 0.53871 1.35085 1.37419 1.45496 2.37619 2.90863 3.12855 3.22946 3.44301 3.90684 4.02382 4.18533 4.25854 4.31486 4.42523 4.44684 4.55027 4.67267 4.69926 4.74492 4.82834 4.86001 4.94520 5.03732 5.07370 5.11808 5.16483 5.21041 5.28296 5.32103 5.38959 5.42937 5.49747 5.57592 5.61720 5.64193 5.71294 5.74283 5.90781 6.15577 6.24240 6.49869 6.52885 6.78382 6.93837 7.41632 8.93671 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.008578 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.137645 B = 3263.316365 C = 4601.729119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.060 3.940 3 H 0.107 0.893 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.075 0.925 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.261 1.261 13 N -0.509 5.509 14 C 0.027 3.973 15 C 0.001 3.999 16 C 0.186 3.814 17 C -0.111 4.111 18 O -0.553 6.553 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.127 4.127 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.041 0.959 28 H -0.020 1.020 29 H 0.003 0.997 30 H 0.259 0.741 31 H 0.006 0.994 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.377 0.623 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 6.297 -13.835 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 H 0.124 0.876 4 C -0.041 4.041 5 C -0.547 4.547 6 H 0.093 0.907 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.185 1.185 13 N -0.232 5.232 14 C -0.122 4.122 15 C -0.127 4.127 16 C 0.145 3.855 17 C -0.168 4.168 18 O -0.361 6.361 19 C -0.120 4.120 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.060 0.940 28 H -0.002 1.002 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.227 0.773 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.892 6.530 -14.577 16.440 hybrid contribution 1.596 -0.915 2.011 2.726 sum 5.489 5.615 -12.566 14.817 Atomic orbital electron populations 1.21724 0.95438 1.00633 1.00894 1.22242 0.94471 1.00254 0.87851 0.87585 1.19756 0.95172 0.95616 0.93578 1.21626 0.95813 1.22892 1.14386 0.90698 1.25786 1.01972 0.95358 0.96065 1.70092 1.37857 1.28783 1.20481 0.85789 0.81078 0.77499 0.78888 1.20168 1.21697 1.18522 1.62433 1.15816 1.08177 1.36748 1.22314 1.00489 0.89496 0.99877 1.23314 0.90707 0.96382 1.02346 1.19920 0.88797 0.87622 0.89187 1.21494 1.00336 1.01185 0.93763 1.86420 1.62850 1.60680 1.26194 1.20662 0.96422 0.94511 1.00426 1.21158 0.96172 0.96528 0.99784 1.21445 0.93505 1.00306 0.99287 1.21488 1.00839 0.92777 0.99517 1.21438 0.95121 0.98124 1.00126 1.21309 0.94638 0.98902 0.99694 0.93372 0.91872 0.93991 1.00214 0.97911 0.93255 0.97492 0.91962 0.90939 0.91087 0.90854 0.91099 0.91323 0.92809 0.77261 0.85398 0.83963 0.83729 0.84280 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.18 71.98 0.66 -3.96 16 2 C 0.06 2.42 2.37 44.92 0.11 2.53 16 3 H 0.11 4.38 4.41 -2.39 -0.01 4.37 16 4 C 0.00 -0.15 4.21 29.85 0.13 -0.03 16 5 C -0.51 -26.49 6.99 25.60 0.18 -26.32 16 6 H 0.08 3.62 3.84 -2.91 -0.01 3.61 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 9 Si 0.94 43.22 29.54 68.60 2.03 45.24 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 13 N -0.51 -18.71 3.79 -897.04 -3.40 -22.10 16 14 C 0.03 0.98 8.37 127.69 1.07 2.05 16 15 C 0.00 0.02 3.38 86.30 0.29 0.31 16 16 C 0.19 5.88 0.98 -11.54 -0.01 5.86 16 17 C -0.11 -3.13 8.54 71.98 0.61 -2.52 16 18 O -0.55 -18.89 8.93 -148.98 -1.33 -20.22 16 19 C -0.12 -3.57 4.81 -19.87 -0.10 -3.67 16 20 C -0.12 -3.26 9.35 22.27 0.21 -3.05 16 21 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 23 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 24 C -0.13 -3.63 9.14 22.27 0.20 -3.42 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.48 6.54 -2.39 -0.02 1.46 16 28 H -0.02 -1.15 8.05 -2.39 -0.02 -1.17 16 29 H 0.00 0.14 5.68 -2.39 -0.01 0.13 16 30 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.01 0.29 6.56 -2.39 -0.02 0.27 16 32 H 0.06 2.21 6.32 -2.39 -0.02 2.19 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.36 6.10 -2.39 -0.01 2.34 16 35 H 0.07 3.17 3.79 -2.39 -0.01 3.16 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.08 7.68 -2.39 -0.02 2.06 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.38 13.33 6.77 -74.06 -0.50 12.83 16 40 H 0.13 3.40 7.48 -2.91 -0.02 3.37 16 41 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 42 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.12 3.41 6.08 -2.91 -0.02 3.40 16 Total: -1.00 -61.30 332.25 2.57 -58.73 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.50 Total: 33.46 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.48 Total: -39.81 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -3.11 Total: -77.40 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.33 Total: -20.22 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -61.30 2.57 -58.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823605568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.379 kcal (2) G-P(sol) polarization free energy of solvation -61.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds