Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46799 * 2 1 4 4 C 1.50703 * 109.47079 * 240.00134 * 2 1 3 5 5 H 1.08001 * 120.00008 * 239.99688 * 4 2 1 6 6 C 1.37882 * 119.99802 * 60.00169 * 4 2 1 7 7 N 1.31506 * 120.00088 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47256 * 89.99884 * 8 6 4 10 10 H 1.48501 * 109.46718 * 209.99791 * 8 6 4 11 11 H 1.48503 * 109.46893 * 329.99395 * 8 6 4 12 12 N 1.46901 * 109.47295 * 120.00067 * 2 1 3 13 13 C 1.46896 * 110.99884 * 275.00106 * 12 2 1 14 14 C 1.50698 * 109.46955 * 180.02562 * 13 12 2 15 15 C 1.38290 * 119.97014 * 269.97520 * 14 13 12 16 16 C 1.38241 * 120.11363 * 179.97438 * 15 14 13 17 17 C 1.38170 * 120.05398 * 0.05191 * 16 15 14 18 18 C 1.38706 * 119.94662 * 359.97247 * 17 16 15 19 19 O 1.35897 * 120.06030 * 180.02562 * 18 17 16 20 20 C 1.42904 * 116.99939 * 355.54459 * 19 18 17 21 21 C 1.52996 * 109.47326 * 63.08614 * 20 19 18 22 22 C 1.53001 * 109.47182 * 183.09074 * 20 19 18 23 23 C 1.53008 * 109.46867 * 303.08794 * 20 19 18 24 24 C 1.38123 * 119.97523 * 89.99847 * 14 13 12 25 25 H 1.09000 * 109.47607 * 60.00028 * 1 2 3 26 26 H 1.09004 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47490 * 299.99605 * 1 2 3 28 28 H 0.96998 * 120.00273 * 180.02562 * 7 6 4 29 29 H 1.00898 * 110.99695 * 151.04669 * 12 2 1 30 30 H 1.09000 * 109.47361 * 60.00157 * 13 12 2 31 31 H 1.09002 * 109.47081 * 299.99469 * 13 12 2 32 32 H 1.07998 * 119.94658 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.97591 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.02926 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.46967 * 77.71119 * 21 20 19 36 36 H 1.08995 * 109.47426 * 197.71047 * 21 20 19 37 37 H 1.09001 * 109.47217 * 317.71665 * 21 20 19 38 38 H 1.09001 * 109.47031 * 59.99950 * 22 20 19 39 39 H 1.09003 * 109.46890 * 179.97438 * 22 20 19 40 40 H 1.09000 * 109.46926 * 299.99907 * 22 20 19 41 41 H 1.09002 * 109.46659 * 47.93552 * 23 20 19 42 42 H 1.08993 * 109.46924 * 167.92978 * 23 20 19 43 43 H 1.08992 * 109.47135 * 287.93237 * 23 20 19 44 44 H 1.07993 * 120.02682 * 0.28081 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1615 -4.4120 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 6 2.5885 -0.5216 3.5556 15 6 1.6955 -1.1520 4.4027 16 6 2.1565 -1.8359 5.5121 17 6 3.5114 -1.8902 5.7778 18 6 4.4091 -1.2582 4.9301 19 8 5.7422 -1.3106 5.1890 20 6 6.1427 -1.9495 6.4029 21 6 5.7358 -3.4238 6.3617 22 6 7.6611 -1.8436 6.5581 23 6 5.4599 -1.2650 7.5888 24 6 3.9438 -0.5729 3.8169 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1610 -3.4843 29 1 2.9173 -1.1205 1.0286 30 1 1.0870 0.6162 2.5525 31 1 2.7589 1.0461 2.1182 32 1 0.6361 -1.1100 4.1971 33 1 1.4572 -2.3278 6.1719 34 1 3.8711 -2.4242 6.6449 35 1 6.4382 -3.9773 5.7384 36 1 5.7468 -3.8322 7.3721 37 1 4.7325 -3.5123 5.9449 38 1 7.9510 -0.7932 6.5875 39 1 7.9665 -2.3306 7.4842 40 1 8.1475 -2.3312 5.7132 41 1 4.3966 -1.1496 7.3787 42 1 5.5894 -1.8738 8.4835 43 1 5.9072 -0.2840 7.7489 44 1 4.6404 -0.0763 3.1578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871749599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = -5.153438 kcal Electronic energy + Delta-G solvation = -21458.742080 eV Core-core repulsion = 18376.733363 eV Total energy + Delta-G solvation = -3082.008717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79294 -38.12029 -35.70867 -34.24657 -32.88863 -31.05541 -29.84033 -28.43831 -27.68065 -27.28652 -25.32361 -24.21637 -22.50289 -21.72205 -19.87853 -19.65076 -17.25418 -16.66174 -16.30695 -15.75747 -15.41030 -14.86407 -14.45226 -14.26187 -14.10243 -13.58977 -13.55147 -13.51124 -13.11042 -12.67405 -12.56867 -12.20649 -12.10608 -11.93875 -11.82205 -11.67220 -11.46013 -11.12294 -10.89209 -10.78919 -10.72795 -10.63516 -10.44555 -10.22598 -10.11369 -9.91100 -8.83182 -8.60168 -8.44429 -7.93886 -7.24887 -6.00955 -4.07251 1.49980 1.66744 3.14915 3.31716 3.37811 3.41394 3.93909 4.42628 4.46472 4.52610 4.66711 4.93000 4.98731 5.19733 5.24097 5.27774 5.30150 5.33098 5.40887 5.50226 5.52516 5.57911 5.59189 5.70979 5.77330 5.87871 5.94610 5.97378 6.02480 6.23293 6.34653 6.48279 6.61444 6.86962 6.96582 6.99639 7.15794 7.24597 7.51378 7.56933 7.80094 7.91405 8.29042 8.40225 8.68159 9.03221 9.58622 11.05402 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.003442 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.681234 B = 8133.929035 C = 8788.430335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.094 3.906 14 C -0.027 4.027 15 C -0.137 4.137 16 C -0.089 4.089 17 C -0.231 4.231 18 C 0.130 3.870 19 O -0.308 6.308 20 C 0.109 3.891 21 C -0.199 4.199 22 C -0.137 4.137 23 C -0.202 4.202 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -4.755 20.709 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.035 4.035 14 C -0.028 4.028 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.250 4.250 18 C 0.085 3.915 19 O -0.223 6.223 20 C 0.071 3.929 21 C -0.256 4.256 22 C -0.194 4.194 23 C -0.259 4.259 24 C -0.168 4.168 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.642 -4.794 20.605 22.493 hybrid contribution 0.967 -0.044 -0.926 1.339 sum 8.609 -4.839 19.679 22.018 Atomic orbital electron populations 1.21718 0.97839 0.99373 0.99354 1.19138 0.92663 0.92380 0.85484 0.98069 1.21270 1.31438 1.12502 0.90428 0.92192 1.24916 0.95067 0.94984 0.99033 1.69894 1.36683 1.22902 1.23453 0.86517 0.79246 0.79323 0.82435 1.20616 1.21281 1.19912 1.60797 1.32305 1.32632 1.05535 1.20930 0.99969 0.93378 0.89208 1.19852 0.91868 0.95641 0.95389 1.20969 0.99971 0.99505 0.95096 1.20927 0.94647 0.98084 0.97097 1.21707 0.94140 1.06403 1.02729 1.18819 0.82341 0.95625 0.94684 1.86146 1.20701 1.74904 1.40552 1.21723 0.95774 0.92036 0.83341 1.22884 1.04326 0.95372 1.03035 1.21801 0.91922 1.03164 1.02556 1.22934 1.03648 1.01592 0.97723 1.20355 0.95471 1.03396 0.97618 0.90085 0.94939 0.97690 0.92934 0.85045 0.90722 0.95213 0.85890 0.86236 0.83906 0.91560 0.91242 0.89599 0.91580 0.90642 0.91472 0.89390 0.91221 0.91680 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.19 37.15 0.34 -2.80 16 2 C 0.21 5.42 2.60 -68.87 -0.18 5.24 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.44 8.59 -34.44 -0.30 -14.73 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.68 -14.99 6.29 -109.22 -0.69 -15.67 16 13 C 0.09 1.76 5.61 -4.98 -0.03 1.74 16 14 C -0.03 -0.44 5.39 -104.65 -0.56 -1.01 16 15 C -0.14 -2.03 9.70 -39.56 -0.38 -2.41 16 16 C -0.09 -1.14 10.04 -39.61 -0.40 -1.53 16 17 C -0.23 -2.88 5.73 -39.43 -0.23 -3.10 16 18 C 0.13 1.86 6.06 -39.22 -0.24 1.62 16 19 O -0.31 -4.18 9.79 -19.42 -0.19 -4.37 16 20 C 0.11 1.08 1.11 -90.62 -0.10 0.98 16 21 C -0.20 -1.78 8.11 37.16 0.30 -1.47 16 22 C -0.14 -1.10 8.74 37.16 0.32 -0.78 16 23 C -0.20 -1.74 8.08 37.16 0.30 -1.44 16 24 C -0.15 -2.37 9.64 -39.43 -0.38 -2.75 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.33 7.30 8.22 -39.29 -0.32 6.98 16 30 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 31 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 1.44 3.60 -52.48 -0.19 1.25 16 35 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 36 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.09 0.87 4.75 -51.93 -0.25 0.63 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.84 4.48 -51.93 -0.23 0.61 16 42 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 43 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -29.60 344.39 -8.74 -38.34 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.04 Total: 5.87 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.62 Total: -20.81 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.06 Total: -40.73 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.19 Total: -4.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.60 -8.74 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871749599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.190 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds