Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46799 * 2 1 4 4 C 1.50703 * 109.47079 * 240.00134 * 2 1 3 5 5 H 1.08001 * 120.00008 * 239.99688 * 4 2 1 6 6 C 1.37882 * 119.99802 * 60.00169 * 4 2 1 7 7 N 1.31506 * 120.00088 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47256 * 89.99884 * 8 6 4 10 10 H 1.48501 * 109.46718 * 209.99791 * 8 6 4 11 11 H 1.48503 * 109.46893 * 329.99395 * 8 6 4 12 12 N 1.46901 * 109.47295 * 120.00067 * 2 1 3 13 13 C 1.46896 * 110.99884 * 275.00106 * 12 2 1 14 14 C 1.50698 * 109.46955 * 180.02562 * 13 12 2 15 15 C 1.38290 * 119.97014 * 269.97520 * 14 13 12 16 16 C 1.38241 * 120.11363 * 179.97438 * 15 14 13 17 17 C 1.38170 * 120.05398 * 0.05191 * 16 15 14 18 18 C 1.38706 * 119.94662 * 359.97247 * 17 16 15 19 19 O 1.35897 * 120.06030 * 180.02562 * 18 17 16 20 20 C 1.42904 * 116.99939 * 355.54459 * 19 18 17 21 21 C 1.52996 * 109.47326 * 63.08614 * 20 19 18 22 22 C 1.53001 * 109.47182 * 183.09074 * 20 19 18 23 23 C 1.53008 * 109.46867 * 303.08794 * 20 19 18 24 24 C 1.38123 * 119.97523 * 89.99847 * 14 13 12 25 25 H 1.09000 * 109.47607 * 60.00028 * 1 2 3 26 26 H 1.09004 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47490 * 299.99605 * 1 2 3 28 28 H 0.96998 * 120.00273 * 180.02562 * 7 6 4 29 29 H 1.00898 * 110.99695 * 151.04669 * 12 2 1 30 30 H 1.09000 * 109.47361 * 60.00157 * 13 12 2 31 31 H 1.09002 * 109.47081 * 299.99469 * 13 12 2 32 32 H 1.07998 * 119.94658 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.97591 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.02926 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.46967 * 77.71119 * 21 20 19 36 36 H 1.08995 * 109.47426 * 197.71047 * 21 20 19 37 37 H 1.09001 * 109.47217 * 317.71665 * 21 20 19 38 38 H 1.09001 * 109.47031 * 59.99950 * 22 20 19 39 39 H 1.09003 * 109.46890 * 179.97438 * 22 20 19 40 40 H 1.09000 * 109.46926 * 299.99907 * 22 20 19 41 41 H 1.09002 * 109.46659 * 47.93552 * 23 20 19 42 42 H 1.08993 * 109.46924 * 167.92978 * 23 20 19 43 43 H 1.08992 * 109.47135 * 287.93237 * 23 20 19 44 44 H 1.07993 * 120.02682 * 0.28081 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1615 -4.4120 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 6 2.5885 -0.5216 3.5556 15 6 1.6955 -1.1520 4.4027 16 6 2.1565 -1.8359 5.5121 17 6 3.5114 -1.8902 5.7778 18 6 4.4091 -1.2582 4.9301 19 8 5.7422 -1.3106 5.1890 20 6 6.1427 -1.9495 6.4029 21 6 5.7358 -3.4238 6.3617 22 6 7.6611 -1.8436 6.5581 23 6 5.4599 -1.2650 7.5888 24 6 3.9438 -0.5729 3.8169 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7081 1.1610 -3.4843 29 1 2.9173 -1.1205 1.0286 30 1 1.0870 0.6162 2.5525 31 1 2.7589 1.0461 2.1182 32 1 0.6361 -1.1100 4.1971 33 1 1.4572 -2.3278 6.1719 34 1 3.8711 -2.4242 6.6449 35 1 6.4382 -3.9773 5.7384 36 1 5.7468 -3.8322 7.3721 37 1 4.7325 -3.5123 5.9449 38 1 7.9510 -0.7932 6.5875 39 1 7.9665 -2.3306 7.4842 40 1 8.1475 -2.3312 5.7132 41 1 4.3966 -1.1496 7.3787 42 1 5.5894 -1.8738 8.4835 43 1 5.9072 -0.2840 7.7489 44 1 4.6404 -0.0763 3.1578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871749599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -22.238242 kcal Electronic energy + Delta-G solvation = -21459.482933 eV Core-core repulsion = 18376.733363 eV Total energy + Delta-G solvation = -3082.749570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75743 -39.27149 -37.46012 -35.09076 -34.72362 -32.60250 -30.91001 -30.01522 -28.33991 -28.24095 -27.36230 -25.74997 -23.54909 -22.84905 -21.75880 -20.76014 -18.70890 -17.95511 -17.56755 -16.99490 -16.73804 -16.26404 -15.81734 -15.58052 -15.44913 -14.88204 -14.71943 -14.57258 -14.50294 -13.90697 -13.59872 -13.28160 -13.20892 -13.08743 -12.86845 -12.84212 -12.69677 -12.67233 -12.50520 -12.43661 -12.24195 -12.18802 -11.96359 -11.59355 -11.53056 -11.27182 -10.91257 -10.58924 -9.76139 -9.09717 -9.01074 -8.14627 -6.29130 0.37123 0.55659 1.41585 1.42388 1.52909 2.26005 2.40714 2.80558 3.13783 3.70795 3.77498 3.84434 3.90207 3.98864 4.00090 4.12762 4.33830 4.45519 4.51761 4.60862 4.67211 4.71510 4.73622 4.75078 4.84222 4.85249 4.91087 4.96324 5.07360 5.13459 5.15389 5.19859 5.25648 5.31612 5.43503 5.45526 5.52233 5.64471 5.77591 5.84278 5.89846 6.20839 6.43031 6.58406 6.72356 6.95058 7.41139 8.91090 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.003442 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.681234 B = 8133.929035 C = 8788.430335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.677 5.677 13 C 0.100 3.900 14 C -0.043 4.043 15 C -0.148 4.148 16 C -0.082 4.082 17 C -0.218 4.218 18 C 0.127 3.873 19 O -0.329 6.329 20 C 0.096 3.904 21 C -0.198 4.198 22 C -0.137 4.137 23 C -0.199 4.199 24 C -0.170 4.170 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.330 0.670 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 -6.549 22.776 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.308 5.308 13 C -0.029 4.029 14 C -0.044 4.044 15 C -0.167 4.167 16 C -0.100 4.100 17 C -0.236 4.236 18 C 0.082 3.918 19 O -0.244 6.244 20 C 0.059 3.941 21 C -0.254 4.254 22 C -0.194 4.194 23 C -0.256 4.256 24 C -0.189 4.189 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.189 0.811 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.193 -6.591 22.693 25.011 hybrid contribution 0.871 0.513 -1.444 1.762 sum 9.064 -6.079 21.249 23.888 Atomic orbital electron populations 1.21539 0.97406 0.98969 0.99197 1.18963 0.92986 0.90776 0.86674 1.01235 1.21579 1.31857 1.12733 0.91684 0.92472 1.25736 0.95130 0.95660 1.02025 1.70016 1.37368 1.23990 1.24259 0.85473 0.78838 0.78242 0.78567 1.19960 1.20703 1.19343 1.60725 1.32145 1.32889 1.05028 1.20866 0.99903 0.92960 0.89145 1.19595 0.92466 0.97138 0.95183 1.21107 0.99916 0.99874 0.95762 1.21296 0.95386 0.96901 0.96427 1.22062 0.93747 1.05065 1.02744 1.18871 0.83234 0.95354 0.94387 1.86135 1.20227 1.75431 1.42624 1.22136 0.96961 0.92591 0.82439 1.22876 1.03294 0.94626 1.04647 1.21854 0.90643 1.03195 1.03665 1.22915 1.02613 1.01930 0.98147 1.20329 0.95196 1.04674 0.98737 0.92326 0.95253 0.95704 0.92738 0.85285 0.90700 0.96168 0.85541 0.82767 0.81073 0.91898 0.88400 0.90860 0.92029 0.87912 0.92138 0.90347 0.88435 0.92020 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 2 C 0.21 11.38 2.60 44.17 0.11 11.49 16 3 H -0.03 -1.74 7.80 -2.38 -0.02 -1.76 16 4 C -0.54 -30.73 8.59 25.60 0.22 -30.51 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.55 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.68 -30.65 6.29 -499.47 -3.14 -33.79 16 13 C 0.10 3.88 5.61 85.56 0.48 4.36 16 14 C -0.04 -1.44 5.39 -19.88 -0.11 -1.55 16 15 C -0.15 -4.25 9.70 22.28 0.22 -4.03 16 16 C -0.08 -1.88 10.04 22.25 0.22 -1.65 16 17 C -0.22 -4.92 5.73 22.37 0.13 -4.79 16 18 C 0.13 3.55 6.06 22.51 0.14 3.69 16 19 O -0.33 -8.71 9.79 -92.39 -0.90 -9.62 16 20 C 0.10 1.68 1.11 -10.79 -0.01 1.67 16 21 C -0.20 -2.95 8.11 71.98 0.58 -2.36 16 22 C -0.14 -1.91 8.74 71.98 0.63 -1.28 16 23 C -0.20 -2.84 8.08 71.98 0.58 -2.26 16 24 C -0.17 -5.55 9.64 22.37 0.22 -5.33 16 25 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 26 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.02 1.12 7.45 -2.39 -0.02 1.10 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.33 15.03 8.22 -89.70 -0.74 14.30 16 30 H 0.07 2.85 7.38 -2.39 -0.02 2.83 16 31 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 32 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.17 2.85 3.60 -2.91 -0.01 2.84 16 35 H 0.06 0.98 8.01 -2.38 -0.02 0.96 16 36 H 0.10 0.89 7.84 -2.39 -0.02 0.87 16 37 H 0.07 1.29 4.75 -2.39 -0.01 1.27 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.27 4.48 -2.39 -0.01 1.26 16 42 H 0.10 0.84 7.89 -2.39 -0.02 0.82 16 43 H 0.06 0.92 8.09 -2.39 -0.02 0.91 16 44 H 0.11 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -64.67 344.39 2.99 -61.68 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.25 Total: 25.34 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.52 Total: -36.46 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.90 Total: -87.35 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.90 Total: -9.62 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.67 2.99 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871749599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.441 kcal (2) G-P(sol) polarization free energy of solvation -64.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds