Wall clock time and date at job start Mon Mar 30 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.50700 * 109.47190 * 119.99753 * 2 1 3 5 5 H 1.08003 * 120.00065 * 119.99622 * 4 2 1 6 6 C 1.37874 * 120.00323 * 300.00085 * 4 2 1 7 7 N 1.31521 * 119.99848 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00466 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47502 * 270.00519 * 8 6 4 10 10 H 1.48506 * 109.46608 * 29.99969 * 8 6 4 11 11 H 1.48502 * 109.47358 * 149.99722 * 8 6 4 12 12 N 1.46904 * 109.47087 * 239.99767 * 2 1 3 13 13 C 1.46903 * 110.99686 * 84.99713 * 12 2 1 14 14 C 1.50700 * 109.46886 * 179.97438 * 13 12 2 15 15 C 1.38287 * 119.97550 * 269.72799 * 14 13 12 16 16 C 1.38241 * 120.11249 * 179.76554 * 15 14 13 17 17 C 1.38166 * 120.05529 * 0.51345 * 16 15 14 18 18 C 1.38714 * 119.94036 * 359.74161 * 17 16 15 19 19 O 1.35904 * 120.05097 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00232 * 355.54233 * 19 18 17 21 21 C 1.53001 * 109.47420 * 63.09233 * 20 19 18 22 22 C 1.53002 * 109.47425 * 183.09330 * 20 19 18 23 23 C 1.53004 * 109.47147 * 303.09178 * 20 19 18 24 24 C 1.38120 * 119.97144 * 90.00443 * 14 13 12 25 25 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46927 * 300.00134 * 1 2 3 27 27 H 1.09002 * 109.47238 * 60.00071 * 1 2 3 28 28 H 0.96994 * 119.99885 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99537 * 321.05045 * 12 2 1 30 30 H 1.08995 * 109.47549 * 299.99980 * 13 12 2 31 31 H 1.09006 * 109.46777 * 60.00151 * 13 12 2 32 32 H 1.08003 * 119.94169 * 0.02562 * 15 14 13 33 33 H 1.08001 * 119.97154 * 180.25304 * 16 15 14 34 34 H 1.07998 * 120.02965 * 179.76727 * 17 16 15 35 35 H 1.08997 * 109.47182 * 77.70455 * 21 20 19 36 36 H 1.09000 * 109.47135 * 197.71288 * 21 20 19 37 37 H 1.09008 * 109.46942 * 317.70973 * 21 20 19 38 38 H 1.09003 * 109.46940 * 59.99780 * 22 20 19 39 39 H 1.08996 * 109.47644 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.46793 * 299.99731 * 22 20 19 41 41 H 1.08996 * 109.47193 * 47.92979 * 23 20 19 42 42 H 1.09000 * 109.47109 * 167.93584 * 23 20 19 43 43 H 1.08997 * 109.46710 * 287.92961 * 23 20 19 44 44 H 1.08002 * 120.02587 * 359.95613 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.3429 -2.1616 4.4119 10 1 3.6294 -1.7582 3.7121 11 1 2.4867 -0.1412 5.1123 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 3.9450 -0.5683 -3.8205 16 6 4.4127 -1.2541 -4.9259 17 6 3.5245 -1.8860 -5.7750 18 6 2.1630 -1.8362 -5.5145 19 8 1.2874 -2.4574 -6.3479 20 6 1.8285 -3.0596 -7.5254 21 6 2.7902 -4.1814 -7.1288 22 6 0.6919 -3.6374 -8.3711 23 6 2.5827 -2.0045 -8.3373 24 6 1.6966 -1.1517 -4.4015 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7082 1.1609 3.4844 29 1 1.4495 -1.4979 -1.4100 30 1 1.0871 0.6162 -2.5526 31 1 2.7589 1.0462 -2.1182 32 1 4.6405 -0.0715 -3.1602 33 1 5.4728 -1.2925 -5.1282 34 1 3.8901 -2.4185 -6.6405 35 1 2.2195 -5.0630 -6.8368 36 1 3.4308 -4.4273 -7.9758 37 1 3.4057 -3.8532 -6.2911 38 1 0.0067 -2.8382 -8.6537 39 1 1.1046 -4.0972 -9.2691 40 1 0.1546 -4.3891 -7.7927 41 1 3.2459 -1.4445 -7.6782 42 1 3.1706 -2.4950 -9.1132 43 1 1.8686 -1.3227 -8.7991 44 1 0.6370 -1.1118 -4.1963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871749600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:15 Heat of formation + Delta-G solvation = -4.117610 kcal Electronic energy + Delta-G solvation = -21458.506944 eV Core-core repulsion = 18376.543144 eV Total energy + Delta-G solvation = -3081.963800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80077 -38.13448 -35.80109 -34.25572 -32.86082 -31.09104 -29.84687 -28.42330 -27.68740 -27.22775 -25.15187 -24.25319 -22.50950 -21.72577 -20.14240 -19.78439 -17.22339 -16.65834 -16.16627 -15.74697 -15.42046 -14.78744 -14.44265 -14.39834 -14.10354 -13.72066 -13.56917 -13.28073 -13.04790 -12.63614 -12.59108 -12.22486 -12.12536 -11.88413 -11.84748 -11.60726 -11.53590 -11.27423 -10.92487 -10.80408 -10.71642 -10.65627 -10.48331 -10.36508 -10.11832 -9.84636 -8.98127 -8.60851 -8.33347 -7.94399 -7.19836 -5.95416 -3.98536 1.49529 1.66533 3.13929 3.35157 3.41233 3.46311 3.93574 4.45611 4.47801 4.51757 4.65863 4.92492 4.98560 5.19233 5.23394 5.27001 5.31989 5.36112 5.40086 5.49373 5.51667 5.57847 5.58438 5.69927 5.76358 5.86961 5.93868 5.96590 6.01560 6.20649 6.34634 6.47472 6.61731 6.72063 6.86957 6.94225 6.99402 7.12621 7.38724 7.56035 7.77190 7.91696 8.29915 8.56376 8.64154 9.08881 9.66681 11.11644 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.003226 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.155043 B = 8676.870574 C = 8796.568604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.677 5.677 13 C 0.094 3.906 14 C -0.027 4.027 15 C -0.136 4.136 16 C -0.089 4.089 17 C -0.231 4.231 18 C 0.130 3.870 19 O -0.309 6.309 20 C 0.109 3.891 21 C -0.199 4.199 22 C -0.137 4.137 23 C -0.202 4.202 24 C -0.150 4.150 25 H 0.028 0.972 26 H 0.089 0.911 27 H 0.005 0.995 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -6.038 -22.184 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.306 5.306 13 C -0.035 4.035 14 C -0.028 4.028 15 C -0.154 4.154 16 C -0.107 4.107 17 C -0.250 4.250 18 C 0.085 3.915 19 O -0.224 6.224 20 C 0.071 3.929 21 C -0.256 4.256 22 C -0.194 4.194 23 C -0.259 4.259 24 C -0.169 4.169 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.024 0.976 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.582 -5.851 -21.848 22.900 hybrid contribution -0.550 -0.393 0.554 0.874 sum 3.032 -6.244 -21.294 22.397 Atomic orbital electron populations 1.22441 1.00702 0.99247 1.00518 1.19208 0.89625 0.94466 0.86396 0.94787 1.21166 1.30134 1.12395 0.89563 0.91915 1.24952 0.95387 0.95213 0.99032 1.69887 1.37399 1.23241 1.23308 0.86503 0.79256 0.79225 0.82442 1.20858 1.19860 1.21397 1.60888 1.58228 1.08802 1.02730 1.20924 0.98757 0.95223 0.88618 1.19850 0.93081 0.95265 0.94562 1.20991 0.95175 1.01519 0.97755 1.20936 0.99007 0.96443 0.94323 1.21709 0.92590 1.07104 1.03567 1.18813 0.88561 0.93339 0.90799 1.86140 1.35402 1.68134 1.32683 1.21721 0.94634 0.92409 0.84100 1.22886 1.00350 0.98930 1.03458 1.21801 0.97370 1.01434 0.98829 1.22935 1.01894 0.99896 1.01176 1.20333 1.00396 1.01478 0.94740 0.95321 0.89215 0.97591 0.93098 0.85665 0.95262 0.90637 0.85768 0.86206 0.83906 0.91570 0.91234 0.89587 0.91585 0.90634 0.91494 0.89380 0.91214 0.91689 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.36 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 4 C -0.49 -13.87 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.95 11.32 55.43 0.63 -25.33 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 N -0.68 -14.75 6.22 -109.21 -0.68 -15.43 16 13 C 0.09 1.74 5.61 -4.97 -0.03 1.71 16 14 C -0.03 -0.44 5.39 -104.65 -0.56 -1.00 16 15 C -0.14 -2.03 9.70 -39.56 -0.38 -2.41 16 16 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 17 C -0.23 -2.86 5.73 -39.43 -0.23 -3.09 16 18 C 0.13 1.84 6.06 -39.22 -0.24 1.60 16 19 O -0.31 -4.12 9.79 -19.44 -0.19 -4.31 16 20 C 0.11 1.06 1.11 -90.62 -0.10 0.96 16 21 C -0.20 -1.76 8.11 37.16 0.30 -1.45 16 22 C -0.14 -1.08 8.74 37.16 0.32 -0.75 16 23 C -0.20 -1.72 8.08 37.16 0.30 -1.42 16 24 C -0.15 -2.35 9.64 -39.44 -0.38 -2.73 16 25 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.33 6.94 8.46 -39.29 -0.33 6.61 16 30 H 0.03 0.54 7.38 -51.93 -0.38 0.15 16 31 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 32 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.44 3.60 -52.49 -0.19 1.25 16 35 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 36 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 37 H 0.09 0.87 4.75 -51.92 -0.25 0.62 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.84 4.48 -51.93 -0.23 0.61 16 42 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 43 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -29.65 344.71 -8.77 -38.42 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.06 Total: 6.23 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -1.64 Total: -21.50 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.05 Total: -40.76 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.65 -8.77 -38.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871749600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds