Wall clock time and date at job start Mon Mar 30 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.50700 * 109.47190 * 119.99753 * 2 1 3 5 5 H 1.08003 * 120.00065 * 119.99622 * 4 2 1 6 6 C 1.37874 * 120.00323 * 300.00085 * 4 2 1 7 7 N 1.31521 * 119.99848 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00466 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47502 * 270.00519 * 8 6 4 10 10 H 1.48506 * 109.46608 * 29.99969 * 8 6 4 11 11 H 1.48502 * 109.47358 * 149.99722 * 8 6 4 12 12 N 1.46904 * 109.47087 * 239.99767 * 2 1 3 13 13 C 1.46903 * 110.99686 * 84.99713 * 12 2 1 14 14 C 1.50700 * 109.46886 * 179.97438 * 13 12 2 15 15 C 1.38287 * 119.97550 * 269.72799 * 14 13 12 16 16 C 1.38241 * 120.11249 * 179.76554 * 15 14 13 17 17 C 1.38166 * 120.05529 * 0.51345 * 16 15 14 18 18 C 1.38714 * 119.94036 * 359.74161 * 17 16 15 19 19 O 1.35904 * 120.05097 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00232 * 355.54233 * 19 18 17 21 21 C 1.53001 * 109.47420 * 63.09233 * 20 19 18 22 22 C 1.53002 * 109.47425 * 183.09330 * 20 19 18 23 23 C 1.53004 * 109.47147 * 303.09178 * 20 19 18 24 24 C 1.38120 * 119.97144 * 90.00443 * 14 13 12 25 25 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46927 * 300.00134 * 1 2 3 27 27 H 1.09002 * 109.47238 * 60.00071 * 1 2 3 28 28 H 0.96994 * 119.99885 * 179.97438 * 7 6 4 29 29 H 1.00899 * 110.99537 * 321.05045 * 12 2 1 30 30 H 1.08995 * 109.47549 * 299.99980 * 13 12 2 31 31 H 1.09006 * 109.46777 * 60.00151 * 13 12 2 32 32 H 1.08003 * 119.94169 * 0.02562 * 15 14 13 33 33 H 1.08001 * 119.97154 * 180.25304 * 16 15 14 34 34 H 1.07998 * 120.02965 * 179.76727 * 17 16 15 35 35 H 1.08997 * 109.47182 * 77.70455 * 21 20 19 36 36 H 1.09000 * 109.47135 * 197.71288 * 21 20 19 37 37 H 1.09008 * 109.46942 * 317.70973 * 21 20 19 38 38 H 1.09003 * 109.46940 * 59.99780 * 22 20 19 39 39 H 1.08996 * 109.47644 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.46793 * 299.99731 * 22 20 19 41 41 H 1.08996 * 109.47193 * 47.92979 * 23 20 19 42 42 H 1.09000 * 109.47109 * 167.93584 * 23 20 19 43 43 H 1.08997 * 109.46710 * 287.92961 * 23 20 19 44 44 H 1.08002 * 120.02587 * 359.95613 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.3429 -2.1616 4.4119 10 1 3.6294 -1.7582 3.7121 11 1 2.4867 -0.1412 5.1123 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 3.9450 -0.5683 -3.8205 16 6 4.4127 -1.2541 -4.9259 17 6 3.5245 -1.8860 -5.7750 18 6 2.1630 -1.8362 -5.5145 19 8 1.2874 -2.4574 -6.3479 20 6 1.8285 -3.0596 -7.5254 21 6 2.7902 -4.1814 -7.1288 22 6 0.6919 -3.6374 -8.3711 23 6 2.5827 -2.0045 -8.3373 24 6 1.6966 -1.1517 -4.4015 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7082 1.1609 3.4844 29 1 1.4495 -1.4979 -1.4100 30 1 1.0871 0.6162 -2.5526 31 1 2.7589 1.0462 -2.1182 32 1 4.6405 -0.0715 -3.1602 33 1 5.4728 -1.2925 -5.1282 34 1 3.8901 -2.4185 -6.6405 35 1 2.2195 -5.0630 -6.8368 36 1 3.4308 -4.4273 -7.9758 37 1 3.4057 -3.8532 -6.2911 38 1 0.0067 -2.8382 -8.6537 39 1 1.1046 -4.0972 -9.2691 40 1 0.1546 -4.3891 -7.7927 41 1 3.2459 -1.4445 -7.6782 42 1 3.1706 -2.4950 -9.1132 43 1 1.8686 -1.3227 -8.7991 44 1 0.6370 -1.1118 -4.1963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871749600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:15 Heat of formation + Delta-G solvation = -21.181718 kcal Electronic energy + Delta-G solvation = -21459.246900 eV Core-core repulsion = 18376.543144 eV Total energy + Delta-G solvation = -3082.703755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.75456 -39.28241 -37.52624 -35.08604 -34.69967 -32.62992 -30.91173 -29.93136 -28.33721 -28.17050 -27.25731 -25.72543 -23.54801 -22.84544 -22.12081 -20.76193 -18.56273 -17.94249 -17.56290 -16.85571 -16.76264 -16.27015 -15.98145 -15.55735 -15.29149 -14.82270 -14.67227 -14.53578 -14.48736 -13.88384 -13.65218 -13.30106 -13.27580 -13.07465 -12.86099 -12.82532 -12.77733 -12.68103 -12.55291 -12.44629 -12.26941 -12.16829 -11.93105 -11.61451 -11.52707 -11.29450 -11.03505 -10.48923 -9.76018 -9.03340 -8.97218 -8.09607 -6.21116 0.37512 0.55826 1.43609 1.43827 1.55495 2.26128 2.44479 2.81015 3.18447 3.71667 3.78241 3.84752 3.91209 3.99338 4.00709 4.12801 4.34242 4.45491 4.52766 4.61069 4.65661 4.69174 4.72315 4.75492 4.77706 4.85652 4.87545 4.91483 4.97386 5.07990 5.13946 5.15850 5.25871 5.31786 5.38295 5.43935 5.52593 5.68139 5.77248 5.80865 5.89835 6.25606 6.58419 6.61959 6.76857 6.92723 7.48719 8.96005 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.003226 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.155043 B = 8676.870574 C = 8796.568604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.283 1.283 12 N -0.679 5.679 13 C 0.100 3.900 14 C -0.043 4.043 15 C -0.150 4.150 16 C -0.083 4.083 17 C -0.218 4.218 18 C 0.127 3.873 19 O -0.328 6.328 20 C 0.096 3.904 21 C -0.198 4.198 22 C -0.136 4.136 23 C -0.200 4.200 24 C -0.168 4.168 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.330 0.670 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.483 -7.556 -24.032 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.208 1.208 12 N -0.308 5.308 13 C -0.029 4.029 14 C -0.044 4.044 15 C -0.169 4.169 16 C -0.101 4.101 17 C -0.236 4.236 18 C 0.082 3.918 19 O -0.243 6.243 20 C 0.059 3.941 21 C -0.255 4.255 22 C -0.193 4.193 23 C -0.256 4.256 24 C -0.187 4.187 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.189 0.811 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.862 -7.374 -23.720 25.311 hybrid contribution -0.955 0.052 0.984 1.372 sum 3.906 -7.323 -22.736 24.204 Atomic orbital electron populations 1.22252 1.00051 0.99207 1.00135 1.18977 0.90028 0.92883 0.87422 0.97678 1.21443 1.30512 1.12480 0.91034 0.92777 1.25732 0.95451 0.95875 1.01912 1.70010 1.38016 1.24262 1.24042 0.85490 0.78795 0.78201 0.78722 1.20121 1.19486 1.20828 1.60753 1.57865 1.09235 1.02966 1.20844 0.98657 0.94819 0.88537 1.19602 0.93993 0.96593 0.94172 1.21111 0.94485 1.02352 0.98907 1.21280 1.00766 0.94990 0.93049 1.22057 0.91667 1.05986 1.03925 1.18871 0.89494 0.92989 0.90487 1.86130 1.36239 1.68139 1.33800 1.22127 0.95757 0.93006 0.83196 1.22878 1.00241 0.98319 1.04029 1.21851 0.96888 1.01179 0.99408 1.22916 1.01752 0.99559 1.01405 1.20319 0.99968 1.02602 0.95842 0.95057 0.91724 0.95710 0.92949 0.85363 0.95455 0.91275 0.85860 0.82952 0.81114 0.91841 0.88468 0.90904 0.91981 0.87970 0.92086 0.90397 0.88493 0.91978 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 8.94 71.98 0.64 -7.20 16 2 C 0.22 11.29 2.57 44.17 0.11 11.40 16 3 H 0.01 0.30 7.80 -2.39 -0.02 0.29 16 4 C -0.52 -29.53 8.84 25.60 0.23 -29.30 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 N -0.68 -30.36 6.22 -499.44 -3.11 -33.46 16 13 C 0.10 3.83 5.61 85.56 0.48 4.31 16 14 C -0.04 -1.42 5.39 -19.88 -0.11 -1.53 16 15 C -0.15 -4.39 9.70 22.28 0.22 -4.18 16 16 C -0.08 -1.93 10.04 22.25 0.22 -1.71 16 17 C -0.22 -4.92 5.73 22.37 0.13 -4.79 16 18 C 0.13 3.48 6.06 22.50 0.14 3.62 16 19 O -0.33 -8.45 9.79 -92.47 -0.91 -9.36 16 20 C 0.10 1.65 1.11 -10.79 -0.01 1.63 16 21 C -0.20 -2.90 8.11 71.98 0.58 -2.32 16 22 C -0.14 -1.83 8.74 71.98 0.63 -1.20 16 23 C -0.20 -2.80 8.08 71.98 0.58 -2.22 16 24 C -0.17 -5.32 9.64 22.36 0.22 -5.11 16 25 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 26 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 27 H 0.02 1.09 7.45 -2.39 -0.02 1.07 16 28 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.33 14.32 8.46 -89.69 -0.76 13.56 16 30 H 0.03 1.04 7.38 -2.39 -0.02 1.02 16 31 H 0.07 2.68 8.00 -2.38 -0.02 2.66 16 32 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.17 2.85 3.60 -2.91 -0.01 2.84 16 35 H 0.06 0.97 8.01 -2.39 -0.02 0.95 16 36 H 0.10 0.88 7.84 -2.39 -0.02 0.86 16 37 H 0.07 1.27 4.75 -2.38 -0.01 1.26 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.08 1.25 4.48 -2.39 -0.01 1.24 16 42 H 0.10 0.83 7.89 -2.39 -0.02 0.81 16 43 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 44 H 0.12 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -64.44 344.71 2.99 -61.45 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.22 Total: 26.12 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 4.51 Total: -37.66 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.86 Total: -87.36 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.91 Total: -9.36 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.44 2.99 -61.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871749600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.265 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds