Wall clock time and date at job start Mon Mar 30 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47117 * 2 1 4 4 O 1.42904 * 109.47229 * 119.99625 * 2 1 3 5 5 C 1.50696 * 109.47591 * 239.99559 * 2 1 3 6 6 C 1.38238 * 120.00047 * 99.99256 * 5 2 1 7 7 C 1.38241 * 119.99989 * 179.97438 * 6 5 2 8 8 C 1.38231 * 119.99930 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00230 * 179.97438 * 8 7 6 10 10 N 1.46910 * 109.47067 * 90.00182 * 9 8 7 11 11 C 1.46898 * 111.00101 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47092 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46862 * 55.00713 * 12 11 10 14 14 C 1.52997 * 109.47482 * 295.00148 * 12 11 10 15 15 C 1.53006 * 109.47223 * 174.99860 * 12 11 10 16 16 C 1.50695 * 109.47196 * 185.00102 * 15 12 11 17 17 H 1.07999 * 120.00313 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99880 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99938 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00145 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47272 * 89.99333 * 20 18 16 22 22 H 1.48495 * 109.47088 * 209.99759 * 20 18 16 23 23 H 1.48505 * 109.46976 * 329.99813 * 20 18 16 24 24 C 1.38240 * 120.00288 * 0.25763 * 8 7 6 25 25 C 1.38237 * 119.99696 * 359.46473 * 24 8 7 26 26 H 1.08999 * 109.46477 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47047 * 300.00025 * 1 2 3 28 28 H 1.08992 * 109.46708 * 60.00496 * 1 2 3 29 29 H 0.96698 * 113.99915 * 59.99637 * 4 2 1 30 30 H 1.07998 * 119.99954 * 359.97438 * 6 5 2 31 31 H 1.07995 * 119.99702 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47057 * 330.00775 * 9 8 7 33 33 H 1.08996 * 109.47788 * 210.00117 * 9 8 7 34 34 H 1.00902 * 110.99558 * 303.95651 * 10 9 8 35 35 H 1.09002 * 109.47308 * 60.00022 * 11 10 9 36 36 H 1.09006 * 109.47288 * 300.00665 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.47135 * 305.00448 * 15 12 11 41 41 H 1.08996 * 109.46945 * 64.99955 * 15 12 11 42 42 H 0.96995 * 120.00259 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00258 * 179.72685 * 24 8 7 44 44 H 1.08001 * 120.00285 * 180.29314 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0325 -0.7105 -1.2303 6 6 2.4588 0.0193 -2.3243 7 6 2.9202 -0.6324 -3.4527 8 6 2.9548 -2.0139 -3.4874 9 6 3.4572 -2.7244 -4.7177 10 7 4.9065 -2.9361 -4.6034 11 6 5.4326 -3.6274 -5.7880 12 6 6.9412 -3.8288 -5.6328 13 1 7.1436 -4.3524 -4.6985 14 6 7.6385 -2.4671 -5.6158 15 6 7.4685 -4.6573 -6.8061 16 6 8.9290 -4.9598 -6.5911 17 1 9.4310 -4.5979 -5.7060 18 6 9.6244 -5.6997 -7.5240 19 7 10.8991 -5.9634 -7.3366 20 14 8.7562 -6.3264 -9.0546 21 1 8.8698 -5.3160 -10.1369 22 1 9.3856 -7.5971 -9.4955 23 1 7.3227 -6.5643 -8.7482 24 6 2.5230 -2.7438 -2.3957 25 6 2.0670 -2.0920 -1.2651 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2330 30 1 2.4313 1.0986 -2.2973 31 1 3.2536 -0.0623 -4.3071 32 1 3.2469 -2.1181 -5.5988 33 1 2.9557 -3.6876 -4.8113 34 1 5.3884 -2.0628 -4.4509 35 1 5.2360 -3.0270 -6.6763 36 1 4.9446 -4.5968 -5.8895 37 1 7.2629 -1.8769 -4.7800 38 1 7.4361 -1.9436 -6.5502 39 1 8.7134 -2.6106 -5.5048 40 1 6.9098 -5.5909 -6.8718 41 1 7.3464 -4.0949 -7.7318 42 1 11.3884 -6.4836 -7.9930 43 1 2.5459 -3.8232 -2.4244 44 1 1.7340 -2.6621 -0.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876967170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:23 Heat of formation + Delta-G solvation = -49.721388 kcal Electronic energy + Delta-G solvation = -20601.910920 eV Core-core repulsion = 17517.969591 eV Total energy + Delta-G solvation = -3083.941328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02606 -37.76402 -36.75239 -34.28256 -32.49822 -31.68829 -31.08429 -29.80098 -27.54886 -26.26040 -24.62689 -23.15913 -22.70896 -21.79108 -20.78122 -19.03337 -17.79974 -16.88654 -16.32145 -15.94751 -15.34046 -15.20807 -14.83911 -14.49728 -14.10946 -13.98913 -13.66030 -13.57983 -13.47889 -13.05015 -12.71058 -12.41457 -12.31106 -12.10545 -11.93333 -11.69623 -11.55990 -11.33380 -11.10263 -11.01952 -10.72516 -10.46303 -10.41244 -9.81155 -9.72367 -9.47210 -9.10388 -9.05402 -8.81208 -8.50671 -8.21940 -6.00724 -3.97619 1.07629 1.22716 3.31797 3.39397 3.42949 3.47476 4.07395 4.28006 4.47709 4.48588 4.55857 4.71012 4.75731 4.84487 4.84950 5.15369 5.21905 5.29661 5.32648 5.43187 5.49596 5.57845 5.64355 5.67136 5.69016 5.81793 5.88837 5.95544 6.13262 6.20067 6.31924 6.36859 6.45504 6.48779 6.75381 6.79747 6.96867 7.06868 7.21115 7.22845 7.32805 7.47752 7.58008 7.83931 8.58820 9.05150 9.62049 11.12725 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040853 B = 0.002568 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.218901 B =10901.305901 C =11068.674174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 H 0.105 0.895 4 O -0.557 6.557 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.074 4.074 9 C 0.094 3.906 10 N -0.684 5.684 11 C 0.061 3.939 12 C -0.075 4.075 13 H 0.072 0.928 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.093 4.093 25 C -0.114 4.114 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.374 0.626 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.341 0.659 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 43 H 0.125 0.875 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.982 11.812 11.303 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 H 0.123 0.877 4 O -0.363 6.363 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.075 4.075 9 C -0.035 4.035 10 N -0.316 5.316 11 C -0.067 4.067 12 C -0.094 4.094 13 H 0.090 0.910 14 C -0.193 4.193 15 C -0.046 4.046 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.112 4.112 25 C -0.132 4.132 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.622 11.715 11.686 28.027 hybrid contribution -0.580 -0.220 -1.796 1.900 sum -23.202 11.494 9.890 27.718 Atomic orbital electron populations 1.22488 0.95533 1.02869 1.02855 1.20796 0.92894 0.95968 0.81865 0.87699 1.86629 1.77348 1.29202 1.43167 1.20504 1.00769 0.94420 0.96542 1.20898 0.99373 0.99565 0.93116 1.21062 0.99684 0.94023 0.98272 1.19890 0.98114 0.93392 0.96091 1.20909 0.90179 0.99324 0.93064 1.60610 1.01844 1.28126 1.40974 1.22196 0.97240 0.97903 0.89384 1.21029 0.90571 0.96722 1.01098 0.90983 1.21755 1.02305 0.96271 0.99014 1.19605 0.97203 0.94610 0.93211 1.21135 0.92942 1.33081 1.07890 0.90810 1.25038 0.94712 0.95826 0.98086 1.69914 1.08243 1.40182 1.36095 0.86796 0.80416 0.78417 0.83739 1.20459 1.21481 1.19086 1.21021 0.97539 1.00118 0.92482 1.20810 1.00661 0.93608 0.98149 0.92112 0.91507 0.91351 0.77776 0.86100 0.86140 0.94665 0.90281 0.84006 0.95787 0.91412 0.94717 0.94093 0.91288 0.96678 0.97260 0.92839 0.85670 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 9.51 37.16 0.35 -0.70 16 2 C 0.14 1.10 3.83 -27.88 -0.11 0.99 16 3 H 0.11 0.76 8.00 -51.93 -0.42 0.35 16 4 O -0.56 -4.88 13.19 -35.23 -0.46 -5.34 16 5 C -0.12 -1.10 4.97 -104.62 -0.52 -1.62 16 6 C -0.11 -1.03 9.67 -39.58 -0.38 -1.42 16 7 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 8 C -0.07 -0.82 5.39 -104.63 -0.56 -1.39 16 9 C 0.09 1.11 5.81 -4.97 -0.03 1.08 16 10 N -0.68 -9.72 6.49 -115.06 -0.75 -10.46 16 11 C 0.06 1.00 5.14 -3.83 -0.02 0.98 16 12 C -0.08 -1.49 2.54 -90.62 -0.23 -1.72 16 13 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.14 -2.52 8.77 37.16 0.33 -2.19 16 15 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 16 C -0.51 -14.54 8.96 -34.44 -0.31 -14.84 16 17 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 C -0.09 -0.98 9.70 -39.58 -0.38 -1.36 16 25 C -0.11 -1.05 9.32 -39.58 -0.37 -1.42 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.37 2.07 7.50 45.56 0.34 2.41 16 30 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.34 4.74 6.97 -39.29 -0.27 4.47 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 40 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 0.79 6.79 -52.49 -0.36 0.44 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -31.89 354.77 -9.37 -41.26 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.79 Total: 2.96 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -2.81 Total: -23.66 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.03 Total: -37.77 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.46 Total: -5.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.89 -9.37 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876967170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.464 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds