Wall clock time and date at job start Mon Mar 30 2020 01:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47117 * 2 1 4 4 O 1.42904 * 109.47229 * 119.99625 * 2 1 3 5 5 C 1.50696 * 109.47591 * 239.99559 * 2 1 3 6 6 C 1.38238 * 120.00047 * 99.99256 * 5 2 1 7 7 C 1.38241 * 119.99989 * 179.97438 * 6 5 2 8 8 C 1.38231 * 119.99930 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00230 * 179.97438 * 8 7 6 10 10 N 1.46910 * 109.47067 * 90.00182 * 9 8 7 11 11 C 1.46898 * 111.00101 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47092 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46862 * 55.00713 * 12 11 10 14 14 C 1.52997 * 109.47482 * 295.00148 * 12 11 10 15 15 C 1.53006 * 109.47223 * 174.99860 * 12 11 10 16 16 C 1.50695 * 109.47196 * 185.00102 * 15 12 11 17 17 H 1.07999 * 120.00313 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99880 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99938 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00145 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47272 * 89.99333 * 20 18 16 22 22 H 1.48495 * 109.47088 * 209.99759 * 20 18 16 23 23 H 1.48505 * 109.46976 * 329.99813 * 20 18 16 24 24 C 1.38240 * 120.00288 * 0.25763 * 8 7 6 25 25 C 1.38237 * 119.99696 * 359.46473 * 24 8 7 26 26 H 1.08999 * 109.46477 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47047 * 300.00025 * 1 2 3 28 28 H 1.08992 * 109.46708 * 60.00496 * 1 2 3 29 29 H 0.96698 * 113.99915 * 59.99637 * 4 2 1 30 30 H 1.07998 * 119.99954 * 359.97438 * 6 5 2 31 31 H 1.07995 * 119.99702 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47057 * 330.00775 * 9 8 7 33 33 H 1.08996 * 109.47788 * 210.00117 * 9 8 7 34 34 H 1.00902 * 110.99558 * 303.95651 * 10 9 8 35 35 H 1.09002 * 109.47308 * 60.00022 * 11 10 9 36 36 H 1.09006 * 109.47288 * 300.00665 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.47135 * 305.00448 * 15 12 11 41 41 H 1.08996 * 109.46945 * 64.99955 * 15 12 11 42 42 H 0.96995 * 120.00259 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00258 * 179.72685 * 24 8 7 44 44 H 1.08001 * 120.00285 * 180.29314 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0325 -0.7105 -1.2303 6 6 2.4588 0.0193 -2.3243 7 6 2.9202 -0.6324 -3.4527 8 6 2.9548 -2.0139 -3.4874 9 6 3.4572 -2.7244 -4.7177 10 7 4.9065 -2.9361 -4.6034 11 6 5.4326 -3.6274 -5.7880 12 6 6.9412 -3.8288 -5.6328 13 1 7.1436 -4.3524 -4.6985 14 6 7.6385 -2.4671 -5.6158 15 6 7.4685 -4.6573 -6.8061 16 6 8.9290 -4.9598 -6.5911 17 1 9.4310 -4.5979 -5.7060 18 6 9.6244 -5.6997 -7.5240 19 7 10.8991 -5.9634 -7.3366 20 14 8.7562 -6.3264 -9.0546 21 1 8.8698 -5.3160 -10.1369 22 1 9.3856 -7.5971 -9.4955 23 1 7.3227 -6.5643 -8.7482 24 6 2.5230 -2.7438 -2.3957 25 6 2.0670 -2.0920 -1.2651 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5137 -0.8900 29 1 1.7210 -1.5951 1.2330 30 1 2.4313 1.0986 -2.2973 31 1 3.2536 -0.0623 -4.3071 32 1 3.2469 -2.1181 -5.5988 33 1 2.9557 -3.6876 -4.8113 34 1 5.3884 -2.0628 -4.4509 35 1 5.2360 -3.0270 -6.6763 36 1 4.9446 -4.5968 -5.8895 37 1 7.2629 -1.8769 -4.7800 38 1 7.4361 -1.9436 -6.5502 39 1 8.7134 -2.6106 -5.5048 40 1 6.9098 -5.5909 -6.8718 41 1 7.3464 -4.0949 -7.7318 42 1 11.3884 -6.4836 -7.9930 43 1 2.5459 -3.8232 -2.4244 44 1 1.7340 -2.6621 -0.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876967170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:22 Heat of formation + Delta-G solvation = -70.973505 kcal Electronic energy + Delta-G solvation = -20602.832481 eV Core-core repulsion = 17517.969591 eV Total energy + Delta-G solvation = -3084.862889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72291 -38.71127 -37.84213 -35.68231 -34.20077 -32.77316 -31.79914 -30.64953 -29.30289 -27.39723 -25.85924 -24.06773 -23.56468 -23.22122 -21.51490 -20.64737 -18.97199 -18.43802 -17.26109 -16.78490 -16.49625 -16.09222 -15.97095 -15.71156 -15.28942 -15.11888 -14.80745 -14.59877 -14.34767 -14.13127 -14.10281 -13.69338 -13.45547 -13.10088 -12.99018 -12.88859 -12.80408 -12.52026 -12.39253 -12.09720 -12.00465 -11.75783 -11.71248 -11.47211 -11.21190 -11.08499 -11.02644 -10.73603 -9.82142 -9.59787 -9.28081 -8.25737 -6.28226 0.34162 0.50866 1.35878 1.38102 1.49908 2.38036 2.72728 3.09309 3.41943 3.56875 3.67028 3.88275 3.94723 4.10513 4.15314 4.21459 4.24703 4.29091 4.39922 4.46575 4.54856 4.67306 4.73810 4.77014 4.83228 4.85695 4.99282 5.00553 5.04553 5.07114 5.17993 5.24438 5.28502 5.37117 5.47124 5.54436 5.64161 5.68912 5.72007 5.73226 6.04843 6.12598 6.34883 6.46157 6.76642 6.79477 7.35139 8.91094 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.040853 B = 0.002568 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.218901 B =10901.305901 C =11068.674174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.144 3.856 3 H 0.107 0.893 4 O -0.575 6.575 5 C -0.124 4.124 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.090 4.090 9 C 0.098 3.902 10 N -0.690 5.690 11 C 0.075 3.925 12 C -0.071 4.071 13 H 0.050 0.950 14 C -0.129 4.129 15 C -0.006 4.006 16 C -0.519 4.519 17 H 0.033 0.967 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.246 1.246 24 C -0.108 4.108 25 C -0.120 4.120 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.386 0.614 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.343 0.657 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.264 0.736 43 H 0.126 0.874 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.691 12.627 10.874 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 H 0.125 0.875 4 O -0.383 6.383 5 C -0.125 4.125 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.090 4.090 9 C -0.030 4.030 10 N -0.322 5.322 11 C -0.054 4.054 12 C -0.090 4.090 13 H 0.069 0.931 14 C -0.187 4.187 15 C -0.044 4.044 16 C -0.557 4.557 17 H 0.051 0.949 18 C -0.197 4.197 19 N -0.596 5.596 20 Si 0.774 3.226 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.169 1.169 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.144 0.856 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.357 12.537 11.272 30.450 hybrid contribution 0.294 -0.427 -1.524 1.610 sum -25.063 12.110 9.748 29.493 Atomic orbital electron populations 1.22431 0.94127 1.03311 1.03296 1.20856 0.93926 0.95754 0.80912 0.87498 1.86600 1.77825 1.30358 1.43563 1.20758 1.00158 0.94542 0.97013 1.21190 0.98899 1.00704 0.92889 1.21240 0.99775 0.93830 0.99007 1.19894 0.99197 0.93888 0.96057 1.20899 0.88352 0.99782 0.93977 1.60536 1.03427 1.28318 1.39947 1.21917 0.94244 0.98591 0.90674 1.20887 0.93452 0.96365 0.98332 0.93123 1.21663 0.99995 0.96225 1.00783 1.19559 0.94121 0.95494 0.95219 1.21457 0.95394 1.32450 1.06394 0.94869 1.26037 0.95421 0.96240 1.02021 1.70077 1.10213 1.41563 1.37724 0.85660 0.79999 0.77875 0.79112 1.19259 1.21241 1.16950 1.21178 0.98102 1.00393 0.92978 1.21084 1.00208 0.94030 0.98460 0.91696 0.90994 0.90950 0.76385 0.84247 0.85168 0.93695 0.90137 0.83818 0.94665 0.91353 0.91932 0.93030 0.94723 0.96469 0.96374 0.92694 0.85565 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.51 71.98 0.68 -0.99 16 2 C 0.14 1.93 3.83 29.85 0.11 2.04 16 3 H 0.11 1.36 8.00 -2.39 -0.02 1.34 16 4 O -0.58 -9.08 13.19 -148.98 -1.97 -11.04 16 5 C -0.12 -2.02 4.97 -19.86 -0.10 -2.12 16 6 C -0.12 -1.97 9.67 22.27 0.22 -1.76 16 7 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 8 C -0.09 -1.85 5.39 -19.87 -0.11 -1.96 16 9 C 0.10 2.13 5.81 85.55 0.50 2.62 16 10 N -0.69 -18.39 6.49 -517.92 -3.36 -21.75 16 11 C 0.07 2.28 5.14 86.30 0.44 2.72 16 12 C -0.07 -2.78 2.54 -10.79 -0.03 -2.81 16 13 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.13 -4.72 8.77 71.98 0.63 -4.09 16 15 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 16 C -0.52 -30.15 8.96 25.60 0.23 -29.92 16 17 H 0.03 2.13 7.30 -2.91 -0.02 2.11 16 18 C 0.00 -0.07 5.47 84.66 0.46 0.39 16 19 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 20 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 24 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 25 C -0.12 -2.00 9.32 22.27 0.21 -1.80 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.39 3.58 7.50 -74.06 -0.56 3.03 16 30 H 0.14 1.69 8.04 -2.91 -0.02 1.67 16 31 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.04 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.34 8.86 6.97 -89.69 -0.63 8.23 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.06 1.90 6.68 -2.39 -0.02 1.89 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 1.47 6.95 -2.38 -0.02 1.46 16 40 H 0.02 0.79 7.20 -2.38 -0.02 0.77 16 41 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 42 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.14 1.59 6.79 -2.91 -0.02 1.57 16 Total: -1.00 -69.42 354.77 0.39 -69.03 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.26 Total: 19.44 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 3.79 Total: -41.75 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -3.06 Total: -82.33 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.97 Total: -11.04 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -69.42 0.39 -69.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876967170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.946 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds