Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47120 * 2 1 4 4 O 1.42906 * 109.46869 * 120.00082 * 2 1 3 5 5 C 1.50704 * 109.47095 * 239.99888 * 2 1 3 6 6 C 1.38240 * 119.99595 * 100.00497 * 5 2 1 7 7 C 1.38235 * 119.99590 * 179.97438 * 6 5 2 8 8 C 1.38234 * 120.00045 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99673 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.46884 * 89.99937 * 9 8 7 11 11 C 1.46900 * 110.99705 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47171 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.53006 * 109.47164 * 65.00001 * 12 11 10 15 15 C 1.52999 * 109.47592 * 184.99707 * 12 11 10 16 16 C 1.50696 * 109.47750 * 174.99892 * 15 12 11 17 17 H 1.08002 * 119.99446 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00217 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00475 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47374 * 59.99958 * 20 18 16 22 22 H 1.48503 * 109.46830 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47178 * 299.99632 * 20 18 16 24 24 C 1.38229 * 120.00348 * 0.26755 * 8 7 6 25 25 C 1.38228 * 120.00048 * 279.97890 * 5 2 1 26 26 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47577 * 300.00159 * 1 2 3 28 28 H 1.09001 * 109.46892 * 59.99988 * 1 2 3 29 29 H 0.96701 * 113.99699 * 60.00125 * 4 2 1 30 30 H 1.07998 * 120.00090 * 359.97369 * 6 5 2 31 31 H 1.07996 * 119.99614 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47231 * 329.99816 * 9 8 7 33 33 H 1.09003 * 109.46607 * 209.99361 * 9 8 7 34 34 H 1.00898 * 111.00694 * 56.04396 * 10 9 8 35 35 H 1.09001 * 109.47612 * 59.99529 * 11 10 9 36 36 H 1.08998 * 109.47323 * 299.99822 * 11 10 9 37 37 H 1.09000 * 109.47050 * 59.99996 * 14 12 11 38 38 H 1.09001 * 109.46801 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46998 * 299.99705 * 14 12 11 40 40 H 1.09002 * 109.47016 * 295.00471 * 15 12 11 41 41 H 1.09000 * 109.46709 * 55.00035 * 15 12 11 42 42 H 0.96993 * 120.00437 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00579 * 179.73067 * 24 8 7 44 44 H 1.08000 * 120.00533 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2305 6 6 2.4588 0.0195 -2.3243 7 6 2.9201 -0.6322 -3.4527 8 6 2.9554 -2.0136 -3.4872 9 6 3.4588 -2.7240 -4.7173 10 7 4.9081 -2.9348 -4.6023 11 6 5.4350 -3.6269 -5.7861 12 6 6.9437 -3.8275 -5.6303 13 1 7.4205 -2.8657 -5.4411 14 6 7.2143 -4.7705 -4.4562 15 6 7.5128 -4.4351 -6.9139 16 6 9.0137 -4.5190 -6.8077 17 1 9.5118 -4.1738 -5.9138 18 6 9.7508 -5.0363 -7.8516 19 7 9.1442 -5.4571 -8.9400 20 14 11.6113 -5.1410 -7.7196 21 1 11.9781 -5.9967 -6.5627 22 1 12.1636 -5.7306 -8.9656 23 1 12.1711 -3.7793 -7.5253 24 6 2.5243 -2.7436 -2.3954 25 6 2.0672 -2.0919 -1.2652 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -1.5953 1.2329 30 1 2.4316 1.0988 -2.2971 31 1 3.2529 -0.0620 -4.3074 32 1 3.2486 -2.1179 -5.5985 33 1 2.9579 -3.6875 -4.8110 34 1 5.1344 -3.4393 -3.7583 35 1 5.2383 -3.0275 -6.6750 36 1 4.9477 -4.5967 -5.8868 37 1 6.7375 -5.7323 -4.6453 38 1 8.2892 -4.9130 -4.3449 39 1 6.8089 -4.3376 -3.5416 40 1 7.1021 -5.4348 -7.0558 41 1 7.2432 -3.8076 -7.7634 42 1 9.6628 -5.8214 -9.6743 43 1 2.5478 -3.8229 -2.4240 44 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876967174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = -53.409302 kcal Electronic energy + Delta-G solvation = -20560.447988 eV Core-core repulsion = 17476.346739 eV Total energy + Delta-G solvation = -3084.101248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99811 -37.71949 -36.65721 -34.20819 -32.51173 -31.60154 -31.05932 -29.70416 -26.99338 -26.18741 -24.59142 -23.25051 -22.67288 -21.99806 -20.76379 -18.98343 -17.78606 -16.56525 -16.22751 -15.79196 -15.37166 -15.14249 -14.76816 -14.45023 -14.23711 -14.02109 -13.65187 -13.46129 -13.39138 -13.00260 -12.50626 -12.39823 -12.12969 -12.11836 -11.79382 -11.59380 -11.34809 -11.25630 -11.07862 -10.86927 -10.72928 -10.44742 -10.32633 -10.20334 -9.71214 -9.17705 -9.07277 -8.98416 -8.75986 -8.31625 -8.14047 -5.96427 -3.97603 1.11028 1.25565 3.35579 3.39733 3.42474 3.50795 4.08480 4.30417 4.47033 4.54740 4.60518 4.72775 4.83713 4.84296 4.88212 5.18987 5.24668 5.35504 5.39215 5.45486 5.57100 5.60734 5.67465 5.77234 5.80068 5.85537 5.92910 6.06267 6.21339 6.26360 6.35045 6.46143 6.52974 6.56491 6.81768 6.94298 7.11513 7.17805 7.23120 7.34533 7.63026 7.70775 7.86850 8.03699 8.47621 9.08493 9.65685 11.15052 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.002493 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.694762 B =11228.159386 C =11468.523732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 H 0.106 0.894 4 O -0.558 6.558 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.094 4.094 8 C -0.073 4.073 9 C 0.094 3.906 10 N -0.684 5.684 11 C 0.064 3.936 12 C -0.084 4.084 13 H 0.065 0.935 14 C -0.134 4.134 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.111 4.111 25 C -0.114 4.114 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.374 0.626 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.339 0.661 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.120 0.880 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 8.585 15.747 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 H 0.123 0.877 4 O -0.364 6.364 5 C -0.123 4.123 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.074 4.074 9 C -0.035 4.035 10 N -0.316 5.316 11 C -0.065 4.065 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.192 4.192 15 C -0.009 4.009 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.130 4.130 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.221 0.779 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.158 0.842 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.669 9.701 15.429 26.090 hybrid contribution 0.452 -1.596 -0.133 1.664 sum -18.218 8.105 15.296 25.131 Atomic orbital electron populations 1.22489 0.95543 1.02834 1.02875 1.20803 0.92889 0.95989 0.81836 0.87656 1.86630 1.77360 1.29143 1.43233 1.20492 1.00877 0.94368 0.96578 1.20959 0.99234 0.99652 0.93159 1.21063 0.98020 0.93943 0.98228 1.19914 0.97827 0.93974 0.95676 1.20914 0.89261 0.98168 0.95176 1.60637 1.10346 1.54615 1.06031 1.22172 0.96884 0.95425 0.91992 1.21223 0.91765 0.99212 0.98085 0.91614 1.21745 1.02363 0.98500 0.96548 1.19107 0.95412 0.95626 0.90787 1.21200 0.92008 1.40531 1.01396 0.92614 1.25022 0.98395 0.95677 0.95477 1.69952 1.35498 1.42440 1.05820 0.86685 0.85923 0.78326 0.77219 1.20316 1.21389 1.20258 1.21028 0.99131 0.99757 0.93069 1.20738 1.00816 0.93647 0.97999 0.92157 0.91522 0.91309 0.77853 0.86037 0.85621 0.90252 0.94671 0.84194 0.91386 0.95774 0.94039 0.91831 0.94983 0.96763 0.96656 0.93050 0.86172 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.51 37.16 0.35 -0.73 16 2 C 0.14 1.12 3.83 -27.88 -0.11 1.01 16 3 H 0.11 0.79 8.00 -51.93 -0.42 0.37 16 4 O -0.56 -4.90 13.19 -35.23 -0.46 -5.36 16 5 C -0.12 -1.14 4.97 -104.62 -0.52 -1.66 16 6 C -0.11 -1.09 9.67 -39.58 -0.38 -1.48 16 7 C -0.09 -1.03 9.70 -39.58 -0.38 -1.42 16 8 C -0.07 -0.85 5.39 -104.62 -0.56 -1.41 16 9 C 0.09 1.16 5.81 -4.97 -0.03 1.14 16 10 N -0.68 -10.20 6.49 -115.05 -0.75 -10.95 16 11 C 0.06 1.10 5.14 -3.83 -0.02 1.08 16 12 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 13 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 14 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 15 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 16 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 17 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 25 C -0.11 -1.05 9.32 -39.58 -0.37 -1.42 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.37 2.06 7.50 45.56 0.34 2.40 16 30 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 33 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.34 4.92 6.97 -39.29 -0.27 4.64 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 39 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 0.78 6.79 -52.49 -0.36 0.42 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.38 358.37 -9.75 -41.12 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.83 Total: 2.56 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -2.82 Total: -23.23 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.01 Total: -37.30 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.46 Total: -5.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.38 -9.75 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876967174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.289 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds