Wall clock time and date at job start Mon Mar 30 2020 01:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47120 * 2 1 4 4 O 1.42906 * 109.46869 * 120.00082 * 2 1 3 5 5 C 1.50704 * 109.47095 * 239.99888 * 2 1 3 6 6 C 1.38240 * 119.99595 * 100.00497 * 5 2 1 7 7 C 1.38235 * 119.99590 * 179.97438 * 6 5 2 8 8 C 1.38234 * 120.00045 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99673 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.46884 * 89.99937 * 9 8 7 11 11 C 1.46900 * 110.99705 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47171 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.53006 * 109.47164 * 65.00001 * 12 11 10 15 15 C 1.52999 * 109.47592 * 184.99707 * 12 11 10 16 16 C 1.50696 * 109.47750 * 174.99892 * 15 12 11 17 17 H 1.08002 * 119.99446 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00217 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00475 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99810 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47374 * 59.99958 * 20 18 16 22 22 H 1.48503 * 109.46830 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47178 * 299.99632 * 20 18 16 24 24 C 1.38229 * 120.00348 * 0.26755 * 8 7 6 25 25 C 1.38228 * 120.00048 * 279.97890 * 5 2 1 26 26 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47577 * 300.00159 * 1 2 3 28 28 H 1.09001 * 109.46892 * 59.99988 * 1 2 3 29 29 H 0.96701 * 113.99699 * 60.00125 * 4 2 1 30 30 H 1.07998 * 120.00090 * 359.97369 * 6 5 2 31 31 H 1.07996 * 119.99614 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47231 * 329.99816 * 9 8 7 33 33 H 1.09003 * 109.46607 * 209.99361 * 9 8 7 34 34 H 1.00898 * 111.00694 * 56.04396 * 10 9 8 35 35 H 1.09001 * 109.47612 * 59.99529 * 11 10 9 36 36 H 1.08998 * 109.47323 * 299.99822 * 11 10 9 37 37 H 1.09000 * 109.47050 * 59.99996 * 14 12 11 38 38 H 1.09001 * 109.46801 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.46998 * 299.99705 * 14 12 11 40 40 H 1.09002 * 109.47016 * 295.00471 * 15 12 11 41 41 H 1.09000 * 109.46709 * 55.00035 * 15 12 11 42 42 H 0.96993 * 120.00437 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.00579 * 179.73067 * 24 8 7 44 44 H 1.08000 * 120.00533 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7104 -1.2305 6 6 2.4588 0.0195 -2.3243 7 6 2.9201 -0.6322 -3.4527 8 6 2.9554 -2.0136 -3.4872 9 6 3.4588 -2.7240 -4.7173 10 7 4.9081 -2.9348 -4.6023 11 6 5.4350 -3.6269 -5.7861 12 6 6.9437 -3.8275 -5.6303 13 1 7.4205 -2.8657 -5.4411 14 6 7.2143 -4.7705 -4.4562 15 6 7.5128 -4.4351 -6.9139 16 6 9.0137 -4.5190 -6.8077 17 1 9.5118 -4.1738 -5.9138 18 6 9.7508 -5.0363 -7.8516 19 7 9.1442 -5.4571 -8.9400 20 14 11.6113 -5.1410 -7.7196 21 1 11.9781 -5.9967 -6.5627 22 1 12.1636 -5.7306 -8.9656 23 1 12.1711 -3.7793 -7.5253 24 6 2.5243 -2.7436 -2.3954 25 6 2.0672 -2.0919 -1.2652 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -1.5953 1.2329 30 1 2.4316 1.0988 -2.2971 31 1 3.2529 -0.0620 -4.3074 32 1 3.2486 -2.1179 -5.5985 33 1 2.9579 -3.6875 -4.8110 34 1 5.1344 -3.4393 -3.7583 35 1 5.2383 -3.0275 -6.6750 36 1 4.9477 -4.5967 -5.8868 37 1 6.7375 -5.7323 -4.6453 38 1 8.2892 -4.9130 -4.3449 39 1 6.8089 -4.3376 -3.5416 40 1 7.1021 -5.4348 -7.0558 41 1 7.2432 -3.8076 -7.7634 42 1 9.6628 -5.8214 -9.6743 43 1 2.5478 -3.8229 -2.4240 44 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876967174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:28 Heat of formation + Delta-G solvation = -73.435876 kcal Electronic energy + Delta-G solvation = -20561.316405 eV Core-core repulsion = 17476.346739 eV Total energy + Delta-G solvation = -3084.969666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72745 -38.69506 -37.82147 -35.70156 -34.15313 -32.70196 -31.80619 -30.55248 -28.84828 -27.40762 -25.96392 -24.23484 -23.79812 -23.16204 -21.53823 -20.65340 -18.57997 -18.41662 -17.24430 -16.72398 -16.61332 -16.18774 -15.94430 -15.73950 -15.26424 -15.13047 -14.60024 -14.48478 -14.25083 -14.22780 -13.99770 -13.66246 -13.30828 -13.09813 -12.99252 -12.82805 -12.74875 -12.59880 -12.41571 -12.22410 -11.99524 -11.92107 -11.74924 -11.50042 -11.09532 -11.06920 -10.93979 -10.52832 -9.82329 -9.60585 -9.30444 -8.17245 -6.26375 0.33847 0.50655 1.40173 1.42957 1.50604 2.42122 2.72601 3.15936 3.41380 3.57409 3.67462 3.85521 3.96494 4.10123 4.16076 4.22820 4.26691 4.29456 4.45075 4.46700 4.55402 4.66579 4.73475 4.77598 4.85015 4.87202 5.01041 5.02637 5.06222 5.18054 5.23113 5.24624 5.37512 5.46352 5.47957 5.55063 5.64316 5.72074 5.79425 5.89168 6.02574 6.10483 6.31282 6.46218 6.77825 6.89222 7.41689 8.94545 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.002493 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.694762 B =11228.159386 C =11468.523732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.145 3.855 3 H 0.106 0.894 4 O -0.574 6.574 5 C -0.123 4.123 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.090 4.090 9 C 0.097 3.903 10 N -0.686 5.686 11 C 0.077 3.923 12 C -0.075 4.075 13 H 0.054 0.946 14 C -0.126 4.126 15 C 0.033 3.967 16 C -0.530 4.530 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.386 0.614 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.343 0.657 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.064 0.936 40 H -0.009 1.009 41 H -0.013 1.013 42 H 0.262 0.738 43 H 0.131 0.869 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.522 8.910 17.790 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 H 0.124 0.876 4 O -0.382 6.382 5 C -0.124 4.124 6 C -0.138 4.138 7 C -0.128 4.128 8 C -0.090 4.090 9 C -0.031 4.031 10 N -0.318 5.318 11 C -0.052 4.052 12 C -0.094 4.094 13 H 0.073 0.927 14 C -0.184 4.184 15 C -0.005 4.005 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.236 0.764 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.163 0.837 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.148 0.852 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.071 10.027 17.493 27.753 hybrid contribution 0.503 -1.668 -0.736 1.891 sum -18.568 8.359 16.757 26.371 Atomic orbital electron populations 1.22433 0.94119 1.03353 1.03274 1.20840 0.93911 0.95740 0.80888 0.87591 1.86604 1.77802 1.30359 1.43472 1.20759 1.00091 0.94657 0.96891 1.21203 0.98908 1.00704 0.92935 1.21184 0.98699 0.94015 0.98854 1.19867 0.99176 0.94237 0.95726 1.20899 0.87573 0.98695 0.95964 1.60552 1.12263 1.53984 1.04991 1.21863 0.94696 0.95708 0.92945 1.21014 0.93736 0.98532 0.96143 0.92703 1.21648 1.01358 0.98317 0.97050 1.19000 0.94836 0.94089 0.92533 1.21606 0.93350 1.40250 1.01573 0.92178 1.25956 1.03698 0.95277 0.95088 1.70089 1.37495 1.43347 1.06639 0.85562 0.79598 0.78741 0.77524 1.19184 1.20991 1.19353 1.21214 0.99055 1.00385 0.93070 1.21060 1.00070 0.93912 0.98427 0.91599 0.90954 0.91068 0.76359 0.84407 0.85742 0.90461 0.93899 0.83727 0.92257 0.95566 0.93904 0.93609 0.91755 0.99070 0.99468 0.92932 0.85157 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.51 71.98 0.68 -1.02 16 2 C 0.14 1.95 3.83 29.85 0.11 2.07 16 3 H 0.11 1.39 8.00 -2.39 -0.02 1.37 16 4 O -0.57 -8.80 13.19 -148.98 -1.97 -10.76 16 5 C -0.12 -2.04 4.97 -19.87 -0.10 -2.14 16 6 C -0.12 -2.16 9.67 22.27 0.22 -1.95 16 7 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 8 C -0.09 -1.96 5.39 -19.87 -0.11 -2.07 16 9 C 0.10 2.33 5.81 85.56 0.50 2.83 16 10 N -0.69 -19.77 6.49 -517.92 -3.36 -23.13 16 11 C 0.08 2.66 5.14 86.30 0.44 3.11 16 12 C -0.08 -3.12 2.55 -10.79 -0.03 -3.15 16 13 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.13 -4.66 8.77 71.98 0.63 -4.02 16 15 C 0.03 1.75 4.45 29.85 0.13 1.88 16 16 C -0.53 -30.27 8.41 25.60 0.22 -30.06 16 17 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 20 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 25 C -0.12 -1.88 9.32 22.27 0.21 -1.67 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.39 3.28 7.50 -74.06 -0.56 2.72 16 30 H 0.14 1.92 8.04 -2.91 -0.02 1.90 16 31 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 33 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.34 9.36 6.97 -89.70 -0.63 8.73 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 39 H 0.06 1.94 6.68 -2.39 -0.02 1.93 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.14 1.45 6.79 -2.91 -0.02 1.44 16 Total: -1.00 -67.38 358.37 0.58 -66.80 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.21 Total: 17.49 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.80 Total: -40.02 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.08 Total: -80.41 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.97 Total: -10.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.38 0.58 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876967174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.636 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds