Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47720 * 2 1 4 4 C 1.53007 * 109.47058 * 239.99564 * 2 1 3 5 5 C 1.50702 * 109.46578 * 65.00691 * 4 2 1 6 6 H 1.07988 * 120.00353 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99275 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00447 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99724 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47308 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47280 * 119.99546 * 9 7 5 12 12 H 1.48496 * 109.47459 * 239.99713 * 9 7 5 13 13 C 1.53008 * 109.46895 * 120.00163 * 2 1 3 14 14 N 1.46902 * 109.46622 * 294.99786 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.46871 * 324.99729 * 15 14 13 17 17 C 1.52997 * 109.47125 * 84.99799 * 15 14 13 18 18 C 1.52998 * 109.46884 * 204.99987 * 15 14 13 19 19 O 1.42901 * 109.47409 * 295.00117 * 18 15 14 20 20 C 1.35896 * 117.00409 * 180.02562 * 19 18 15 21 21 C 1.38738 * 120.04989 * 359.72690 * 20 19 18 22 22 C 1.38155 * 119.93575 * 179.74540 * 21 20 19 23 23 C 1.38258 * 120.05624 * 0.50415 * 22 21 20 24 24 C 1.38264 * 120.11717 * 359.76882 * 23 22 21 25 25 C 1.38148 * 120.05196 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47325 * 300.00430 * 1 2 3 27 27 H 1.09001 * 109.46506 * 60.00142 * 1 2 3 28 28 H 1.08999 * 109.47350 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46854 * 185.00181 * 4 2 1 30 30 H 1.08997 * 109.47040 * 305.00432 * 4 2 1 31 31 H 0.96998 * 120.00066 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.46924 * 174.99924 * 13 2 1 33 33 H 1.09004 * 109.46978 * 54.99801 * 13 2 1 34 34 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 35 35 H 1.09002 * 109.46897 * 179.97438 * 17 15 14 36 36 H 1.08994 * 109.47330 * 300.00353 * 17 15 14 37 37 H 1.09005 * 109.46664 * 60.00054 * 17 15 14 38 38 H 1.08997 * 109.47242 * 55.00236 * 18 15 14 39 39 H 1.09002 * 109.47019 * 174.99984 * 18 15 14 40 40 H 1.07993 * 120.03337 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.96459 * 180.27827 * 22 21 20 42 42 H 1.08007 * 119.94190 * 179.74813 * 23 22 21 43 43 H 1.07994 * 119.97404 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.02506 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0802 0.9741 -2.3757 7 6 1.9925 -0.4024 -3.7282 8 7 2.6755 -1.5195 -3.8511 9 14 1.4978 0.5620 -5.2497 10 1 0.7406 1.7732 -4.8436 11 1 2.7156 0.9666 -5.9970 12 1 0.6435 -0.2872 -6.1181 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1246 -0.6272 3.6673 16 1 2.0805 -1.7080 3.5332 17 6 3.5683 -0.2068 3.9499 18 6 1.2357 -0.2226 4.8450 19 8 1.3832 1.1767 5.0945 20 6 0.6570 1.7012 6.1164 21 6 -0.1848 0.8868 6.8601 22 6 -0.9180 1.4214 7.9018 23 6 -0.8214 2.7687 8.1967 24 6 0.0125 3.5835 7.4535 25 6 0.7518 3.0528 6.4142 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1264 -0.7996 -1.2055 30 1 1.6053 -1.7199 -1.2951 31 1 2.9228 -1.8425 -4.7317 32 1 3.1262 -0.7996 1.2056 33 1 1.6053 -1.7199 1.2952 34 1 1.9881 0.9873 2.3967 35 1 3.9193 -0.6996 4.8566 36 1 4.2015 -0.4950 3.1109 37 1 3.6124 0.8740 4.0839 38 1 0.1949 -0.4414 4.6066 39 1 1.5308 -0.7829 5.7322 40 1 -0.2639 -0.1648 6.6272 41 1 -1.5700 0.7869 8.4839 42 1 -1.3986 3.1855 9.0090 43 1 0.0859 4.6356 7.6856 44 1 1.4027 3.6897 5.8336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876975630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -53.027182 kcal Electronic energy + Delta-G solvation = -20914.622057 eV Core-core repulsion = 17830.537378 eV Total energy + Delta-G solvation = -3084.084678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02263 -39.05238 -37.97248 -36.15943 -34.26496 -31.96081 -31.34203 -30.37390 -28.66496 -27.79342 -26.55969 -24.40850 -23.53128 -23.19303 -21.53329 -20.61032 -19.17349 -18.49174 -17.10656 -16.84837 -16.67269 -16.54121 -16.15955 -15.88353 -15.46659 -15.20559 -14.64927 -14.40673 -14.27691 -14.23488 -13.90871 -13.61375 -13.34636 -13.14533 -13.00306 -12.78486 -12.55409 -12.47991 -12.42095 -12.21211 -12.08291 -11.94501 -11.76666 -11.61035 -11.48318 -11.08370 -10.86650 -10.54005 -9.89625 -9.29384 -9.07746 -8.17848 -6.26599 0.44920 0.56794 1.39334 1.39908 1.52985 2.34470 2.41788 2.91188 3.15563 3.19429 3.80551 4.00122 4.04788 4.10599 4.14985 4.31056 4.34756 4.36682 4.41443 4.51941 4.55812 4.59095 4.67960 4.75116 4.82826 4.88632 4.94603 5.02790 5.05053 5.13848 5.26625 5.29407 5.44237 5.46889 5.50752 5.54067 5.56968 5.65583 5.81610 5.89330 5.93018 6.10038 6.32149 6.47894 6.56778 6.89522 7.41596 8.94380 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.002793 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.923224 B =10021.497147 C =10476.189048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.049 0.951 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.078 3.922 14 N -0.679 5.679 15 C 0.085 3.915 16 H 0.102 0.898 17 C -0.174 4.174 18 C 0.076 3.924 19 O -0.321 6.321 20 C 0.114 3.886 21 C -0.222 4.222 22 C -0.087 4.087 23 C -0.169 4.169 24 C -0.086 4.086 25 C -0.175 4.175 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.037 0.963 29 H -0.014 1.014 30 H -0.008 1.008 31 H 0.262 0.738 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.343 0.657 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 5.525 25.884 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.051 4.051 14 N -0.310 5.310 15 C -0.025 4.025 16 H 0.120 0.880 17 C -0.233 4.233 18 C 0.000 4.000 19 O -0.235 6.235 20 C 0.069 3.931 21 C -0.240 4.240 22 C -0.105 4.105 23 C -0.187 4.187 24 C -0.103 4.103 25 C -0.194 4.194 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.005 0.995 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.130 5.218 25.658 26.681 hybrid contribution 0.981 0.097 -1.281 1.617 sum -4.148 5.315 24.377 25.292 Atomic orbital electron populations 1.21469 0.94794 1.00376 1.00276 1.21009 0.96622 0.98296 0.93401 0.93235 1.19016 0.94101 0.94719 0.92663 1.21666 1.34259 1.08499 0.92144 0.92284 1.25943 0.95309 0.96119 1.02622 1.70102 1.40382 1.22922 1.24207 0.85465 0.78080 0.78893 0.79033 1.18690 1.20503 1.20477 1.21886 0.96742 0.97271 0.89240 1.60569 1.63628 1.05908 1.00846 1.21721 0.92554 0.99428 0.88842 0.87962 1.22349 0.96564 1.02235 1.02122 1.22946 1.00559 0.79002 0.97455 1.86048 1.62911 1.26291 1.48278 1.19336 0.92003 0.93581 0.88215 1.21503 1.01652 1.00860 1.00035 1.21298 0.97490 0.95955 0.95770 1.21399 1.01305 0.93971 1.02020 1.21281 0.94522 1.00984 0.93552 1.20689 1.04584 0.92686 1.01445 0.91789 0.94571 0.94411 0.99536 0.99011 0.92942 0.96188 0.91579 0.83858 0.90788 0.93344 0.92346 0.91495 0.90151 0.84598 0.83773 0.83744 0.83401 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -3.08 2.48 -10.79 -0.03 -3.11 16 3 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 4 C 0.03 1.73 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.29 7.05 -2.92 -0.02 3.27 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.08 2.64 4.87 86.31 0.42 3.06 16 14 N -0.68 -19.06 5.65 -491.55 -2.78 -21.84 16 15 C 0.08 1.88 2.99 44.91 0.13 2.01 16 16 H 0.10 2.12 7.80 -2.39 -0.02 2.10 16 17 C -0.17 -3.70 8.97 71.98 0.65 -3.05 16 18 C 0.08 1.51 4.58 71.98 0.33 1.84 16 19 O -0.32 -7.61 9.20 -92.39 -0.85 -8.46 16 20 C 0.11 2.55 6.69 22.51 0.15 2.70 16 21 C -0.22 -4.19 9.04 22.37 0.20 -3.99 16 22 C -0.09 -1.37 10.04 22.25 0.22 -1.15 16 23 C -0.17 -2.49 10.04 22.28 0.22 -2.27 16 24 C -0.09 -1.39 10.04 22.25 0.22 -1.16 16 25 C -0.18 -3.61 9.99 22.37 0.22 -3.39 16 26 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 27 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.02 0.70 7.44 -2.39 -0.02 0.68 16 33 H 0.07 2.24 8.05 -2.38 -0.02 2.23 16 34 H 0.34 9.91 8.47 -89.70 -0.76 9.15 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 37 H 0.06 1.33 7.55 -2.38 -0.02 1.31 16 38 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 39 H 0.08 1.25 7.67 -2.39 -0.02 1.24 16 40 H 0.14 2.18 6.30 -2.91 -0.02 2.16 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -65.94 357.32 3.08 -62.86 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.20 Total: 17.80 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 4.20 Total: -40.12 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -2.49 Total: -79.15 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.85 Total: -8.46 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.94 3.08 -62.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876975630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.828 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds