Wall clock time and date at job start Mon Mar 30 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.53000 * 109.46953 * 240.00792 * 2 1 3 5 5 O 1.42903 * 109.46726 * 304.99395 * 4 2 1 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 2 7 7 C 1.38730 * 120.05544 * 359.73068 * 6 5 4 8 8 C 1.38147 * 119.94222 * 179.74118 * 7 6 5 9 9 C 1.38271 * 120.05563 * 0.50991 * 8 7 6 10 10 C 1.38267 * 120.11057 * 359.76343 * 9 8 7 11 11 C 1.38151 * 120.05677 * 359.97438 * 10 9 8 12 12 N 1.46898 * 109.47471 * 120.00394 * 2 1 3 13 13 C 1.46903 * 110.99891 * 275.00042 * 12 2 1 14 14 C 1.52995 * 109.47070 * 180.02562 * 13 12 2 15 15 H 1.09007 * 109.47260 * 305.00107 * 14 13 12 16 16 C 1.53000 * 109.47296 * 64.99966 * 14 13 12 17 17 C 1.52994 * 109.47262 * 185.00157 * 14 13 12 18 18 C 1.50704 * 109.47234 * 174.99946 * 17 14 13 19 19 H 1.07995 * 120.00088 * 359.97438 * 18 17 14 20 20 C 1.37885 * 119.99925 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99910 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99946 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47315 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47377 * 119.99399 * 22 20 18 25 25 H 1.48506 * 109.47180 * 239.99875 * 22 20 18 26 26 H 1.09004 * 109.46951 * 299.99466 * 1 2 3 27 27 H 1.09001 * 109.47815 * 59.99801 * 1 2 3 28 28 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47398 * 64.99639 * 4 2 1 30 30 H 1.09001 * 109.47194 * 184.99820 * 4 2 1 31 31 H 1.07997 * 120.03088 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.97468 * 180.26993 * 8 7 6 33 33 H 1.08003 * 119.94624 * 179.74215 * 9 8 7 34 34 H 1.08003 * 119.97499 * 179.97438 * 10 9 8 35 35 H 1.07997 * 120.02828 * 179.97438 * 11 10 9 36 36 H 1.00900 * 110.99833 * 151.04998 * 12 2 1 37 37 H 1.08997 * 109.47192 * 299.99954 * 13 12 2 38 38 H 1.08999 * 109.46932 * 59.99938 * 13 12 2 39 39 H 1.09002 * 109.47080 * 299.99722 * 16 14 13 40 40 H 1.08997 * 109.47355 * 60.00025 * 16 14 13 41 41 H 1.09003 * 109.47319 * 180.02562 * 16 14 13 42 42 H 1.09004 * 109.47207 * 294.99441 * 17 14 13 43 43 H 1.09002 * 109.47286 * 54.99960 * 17 14 13 44 44 H 0.96996 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 1.4702 -2.0302 -1.3096 6 6 1.8234 -2.8088 -2.3660 7 6 2.6959 -2.3207 -3.3278 8 6 3.0575 -3.1160 -4.3979 9 6 2.5424 -4.3937 -4.5164 10 6 1.6683 -4.8804 -3.5621 11 6 1.3077 -4.0910 -2.4872 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5964 -0.5330 3.5740 15 1 1.9712 -1.4085 3.7499 16 6 4.0401 -0.9778 3.3316 17 6 2.5441 0.3849 4.7969 18 6 2.9332 -0.3941 6.0268 19 1 3.1915 -1.4395 5.9446 20 6 2.9584 0.2275 7.2573 21 7 2.6434 1.5005 7.3575 22 14 3.4414 -0.7379 8.7818 23 1 3.7482 -2.1406 8.4028 24 1 4.6406 -0.1184 9.4008 25 1 2.3187 -0.7226 9.7538 26 1 -0.3633 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7515 -0.1581 -2.1370 30 1 3.1263 -0.7993 -1.2058 31 1 3.0950 -1.3212 -3.2381 32 1 3.7401 -2.7381 -5.1447 33 1 2.8231 -5.0124 -5.3559 34 1 1.2669 -5.8786 -3.6570 35 1 0.6246 -4.4715 -1.7423 36 1 2.9174 -1.1205 1.0286 37 1 2.7589 1.0461 2.1182 38 1 1.0871 0.6161 2.5525 39 1 4.0773 -1.6319 2.4604 40 1 4.6653 -0.1025 3.1557 41 1 4.4060 -1.5165 4.2057 42 1 3.2372 1.2148 4.6582 43 1 1.5325 0.7726 4.9173 44 1 2.6615 1.9379 8.2231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876975631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:50 Heat of formation + Delta-G solvation = -51.046159 kcal Electronic energy + Delta-G solvation = -20917.923832 eV Core-core repulsion = 17833.925058 eV Total energy + Delta-G solvation = -3083.998775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06249 -39.08641 -38.00902 -36.10629 -34.27519 -31.96113 -31.38557 -30.41824 -28.67589 -27.98249 -26.68854 -24.43686 -23.47402 -23.11586 -21.29408 -20.61109 -19.22477 -18.54036 -17.36890 -16.92863 -16.80512 -16.53845 -16.23384 -15.80356 -15.47605 -15.08497 -14.67947 -14.43959 -14.28181 -14.20884 -13.94686 -13.60027 -13.36800 -13.28976 -12.94359 -12.77805 -12.58446 -12.51898 -12.42459 -12.23962 -11.97129 -11.93147 -11.77952 -11.60644 -11.47384 -11.06058 -10.89932 -10.54066 -9.90811 -9.32243 -9.09404 -8.17864 -6.26644 0.43788 0.55329 1.39331 1.40030 1.53073 2.28032 2.41826 2.89944 3.15553 3.18605 3.70795 3.96691 3.97818 4.05520 4.20085 4.25278 4.30099 4.34256 4.38721 4.47288 4.54202 4.59319 4.67465 4.74618 4.79288 4.81285 4.93791 5.00414 5.05752 5.13170 5.24632 5.38505 5.39281 5.45254 5.48274 5.52948 5.56145 5.64767 5.80237 5.89411 5.91856 6.11727 6.31892 6.49983 6.55899 6.89354 7.41489 8.94417 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.002794 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.660521 B =10020.799400 C =10476.394335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.083 3.917 3 H 0.072 0.928 4 C 0.063 3.937 5 O -0.315 6.315 6 C 0.111 3.889 7 C -0.221 4.221 8 C -0.086 4.086 9 C -0.168 4.168 10 C -0.085 4.085 11 C -0.175 4.175 12 N -0.684 5.684 13 C 0.078 3.922 14 C -0.075 4.075 15 H 0.052 0.948 16 C -0.125 4.125 17 C 0.033 3.967 18 C -0.528 4.528 19 H 0.059 0.941 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.961 3.039 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.280 1.280 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.343 0.657 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.044 0.956 42 H -0.008 1.008 43 H -0.014 1.014 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -7.941 -26.098 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.027 4.027 3 H 0.090 0.910 4 C -0.013 4.013 5 O -0.228 6.228 6 C 0.066 3.934 7 C -0.240 4.240 8 C -0.104 4.104 9 C -0.186 4.186 10 C -0.103 4.103 11 C -0.194 4.194 12 N -0.318 5.318 13 C -0.051 4.051 14 C -0.094 4.094 15 H 0.070 0.930 16 C -0.183 4.183 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.206 1.206 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.010 0.990 43 H 0.004 0.996 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.654 -8.088 -25.658 26.910 hybrid contribution 0.918 0.676 1.036 1.540 sum 0.264 -7.413 -24.622 25.715 Atomic orbital electron populations 1.21672 0.94019 1.02103 1.01377 1.21719 0.97165 0.95809 0.87966 0.91013 1.23083 0.97852 0.81661 0.98660 1.86186 1.67128 1.26716 1.42815 1.19373 0.94864 0.91656 0.87533 1.21494 1.02858 1.02408 0.97249 1.21304 0.98272 0.93971 0.96885 1.21409 0.99648 0.96750 1.00795 1.21282 0.96390 0.99964 0.92648 1.20691 1.04556 0.92749 1.01373 1.60488 1.33834 1.33392 1.04097 1.21885 0.99524 0.93304 0.90356 1.21005 0.96743 0.98024 0.93669 0.92958 1.21634 0.95643 1.00281 1.00702 1.19003 0.94452 0.94263 0.92723 1.21667 1.44819 0.96885 0.93207 0.92266 1.25950 0.95569 0.95903 1.02584 1.70104 1.50409 1.11760 1.25338 0.85457 0.77865 0.79103 0.78997 1.18682 1.20403 1.20568 0.93672 0.90970 0.92722 0.89518 0.91184 0.84409 0.83655 0.83700 0.83447 0.85655 0.83699 0.95448 0.92483 0.91847 0.93798 0.93720 0.98998 0.99553 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.22 71.98 0.66 -2.52 16 2 C 0.08 1.90 3.02 44.92 0.14 2.04 16 3 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 4 C 0.06 1.20 4.29 71.98 0.31 1.51 16 5 O -0.31 -7.62 9.20 -92.47 -0.85 -8.47 16 6 C 0.11 2.47 6.69 22.51 0.15 2.62 16 7 C -0.22 -3.97 9.04 22.37 0.20 -3.77 16 8 C -0.09 -1.29 10.04 22.26 0.22 -1.07 16 9 C -0.17 -2.41 10.04 22.28 0.22 -2.19 16 10 C -0.08 -1.38 10.04 22.26 0.22 -1.16 16 11 C -0.17 -3.67 9.99 22.37 0.22 -3.44 16 12 N -0.68 -19.82 6.26 -491.58 -3.08 -22.89 16 13 C 0.08 2.72 4.94 86.30 0.43 3.15 16 14 C -0.08 -3.16 2.54 -10.80 -0.03 -3.19 16 15 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 16 C -0.13 -4.64 8.77 71.98 0.63 -4.01 16 17 C 0.03 1.77 4.45 29.85 0.13 1.90 16 18 C -0.53 -30.34 8.41 25.60 0.22 -30.12 16 19 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 21 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 22 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H 0.04 1.17 7.45 -2.38 -0.02 1.16 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.47 7.56 -2.39 -0.02 1.45 16 29 H 0.09 1.29 7.65 -2.39 -0.02 1.27 16 30 H 0.07 1.20 7.55 -2.39 -0.02 1.18 16 31 H 0.14 1.98 6.30 -2.91 -0.02 1.97 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.34 9.34 6.53 -89.69 -0.59 8.76 16 37 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 38 H 0.06 2.10 7.44 -2.39 -0.02 2.08 16 39 H 0.06 1.94 6.68 -2.39 -0.02 1.92 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.80 6.95 -2.39 -0.02 1.79 16 42 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -67.43 354.81 2.95 -64.47 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.37 Total: 17.12 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 4.20 Total: -39.95 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.79 Total: -80.32 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.85 Total: -8.47 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.43 2.95 -64.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876975631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.425 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds